RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 CLEC1BQ9P126 229 aa4.48□□□□□ -1.69
DEPDC1-204ENST00000489862 STRIP2Q9ULQ0 834 aa4.48□□□□□ -1.69
DEPDC1-204ENST00000489862 EMC9Q9Y3B6 208 aa4.48□□□□□ -1.69
DEPDC1-204ENST00000489862 LOC102724159A0A0B4J2E5 919 aa4.47□□□□□ -1.69
DEPDC1-204ENST00000489862 C7orf72A4D263 438 aa4.47□□□□□ -1.69
DEPDC1-204ENST00000489862 SMAD7O15105 426 aaKnown RBP4.47□□□□□ -1.69
DEPDC1-204ENST00000489862 PARNO95453 639 aaKnown RBP4.47□□□□□ -1.69
DEPDC1-204ENST00000489862 SARSP49591 514 aaKnown RBP4.47□□□□□ -1.69
DEPDC1-204ENST00000489862 KRTAP10-7P60409 375 aaPredicted RBP4.47□□□□□ -1.69
DEPDC1-204ENST00000489862 ABHD18Q0P651 414 aa4.47□□□□□ -1.69
DEPDC1-204ENST00000489862 SCRN1Q12765 414 aa4.47□□□□□ -1.69
DEPDC1-204ENST00000489862 PWP2Q15269 919 aaKnown RBP4.47□□□□□ -1.69
DEPDC1-204ENST00000489862 MBLAC2Q68D91 279 aa4.47□□□□□ -1.69
DEPDC1-204ENST00000489862 ALG3Q92685 438 aa4.47□□□□□ -1.69
DEPDC1-204ENST00000489862 SSBP3Q9BWW4 388 aaPredicted RBP4.47□□□□□ -1.69
DEPDC1-204ENST00000489862 PRDM16Q9HAZ2 1276 aa4.47□□□□□ -1.69
DEPDC1-204ENST00000489862 ASGR2P07307 311 aa4.46□□□□□ -1.69
DEPDC1-204ENST00000489862 PLS3P13797 630 aa4.46□□□□□ -1.69
DEPDC1-204ENST00000489862 GTF2IRD2BQ6EKJ0 949 aa4.46□□□□□ -1.69
DEPDC1-204ENST00000489862 C6orf15Q6UXA7 325 aaPredicted RBP4.46□□□□□ -1.69
DEPDC1-204ENST00000489862 GTF2IRD2Q86UP8 949 aa4.46□□□□□ -1.69
DEPDC1-204ENST00000489862 CABP7Q86V35 215 aa4.46□□□□□ -1.69
DEPDC1-204ENST00000489862 AMER2Q8N7J2 671 aa4.46□□□□□ -1.69
DEPDC1-204ENST00000489862 USP33Q8TEY7 942 aa4.46□□□□□ -1.69
DEPDC1-204ENST00000489862 COPS5Q92905 334 aa4.46□□□□□ -1.69
DEPDC1-204ENST00000489862 ZG16BQ96DA0 208 aa4.46□□□□□ -1.69
DEPDC1-204ENST00000489862 SEMA4AQ9H3S1 761 aa4.46□□□□□ -1.69
DEPDC1-204ENST00000489862 DEF6Q9H4E7 631 aa4.46□□□□□ -1.69
DEPDC1-204ENST00000489862 NTMQ9P121 344 aa4.46□□□□□ -1.69
DEPDC1-204ENST00000489862 RIPOR2Q9Y4F9 1068 aa4.46□□□□□ -1.69
DEPDC1-204ENST00000489862 B2RBV5 119 aa4.46□□□□□ -1.7
DEPDC1-204ENST00000489862 NOP56O00567 594 aaKnown RBP4.46□□□□□ -1.7
DEPDC1-204ENST00000489862 NPHS1O60500 1241 aa4.46□□□□□ -1.7
DEPDC1-204ENST00000489862 FUCA1P04066 466 aa4.46□□□□□ -1.7
DEPDC1-204ENST00000489862 THBDP07204 575 aa4.46□□□□□ -1.7
DEPDC1-204ENST00000489862 NCAM1P13591 858 aa4.46□□□□□ -1.7
DEPDC1-204ENST00000489862 PMLP29590 882 aa4.46□□□□□ -1.7
DEPDC1-204ENST00000489862 DNAJA1P31689 397 aaKnown RBP4.46□□□□□ -1.7
DEPDC1-204ENST00000489862 CYP4F3Q08477 520 aa4.46□□□□□ -1.7
DEPDC1-204ENST00000489862 NCAPHQ15003 741 aa4.46□□□□□ -1.7
DEPDC1-204ENST00000489862 LARP1BQ659C4 914 aaKnown RBP4.46□□□□□ -1.7
DEPDC1-204ENST00000489862 KRTAP5-11Q6L8G4 156 aa4.46□□□□□ -1.7
DEPDC1-204ENST00000489862 BORAQ6PGQ7 559 aa4.46□□□□□ -1.7
DEPDC1-204ENST00000489862 ZNF761Q86XN6 746 aaPredicted RBP4.46□□□□□ -1.7
DEPDC1-204ENST00000489862 DPF3Q92784 378 aa4.46□□□□□ -1.7
DEPDC1-204ENST00000489862 MRGPRX3Q96LB0 322 aa4.46□□□□□ -1.7
DEPDC1-204ENST00000489862 IKZF4Q9H2S9 585 aa4.46□□□□□ -1.7
DEPDC1-204ENST00000489862 ZSWIM4Q9H7M6 989 aa4.46□□□□□ -1.7
DEPDC1-204ENST00000489862 TMA7Q9Y2S6 64 aaKnown RBP4.46□□□□□ -1.7
DEPDC1-204ENST00000489862 SIT1Q9Y3P8 196 aa4.46□□□□□ -1.7
DEPDC1-204ENST00000489862 TRBV23OR9-2A0A075B6M9 112 aa4.45□□□□□ -1.7
DEPDC1-204ENST00000489862 TBX1O43435 398 aa4.45□□□□□ -1.7
DEPDC1-204ENST00000489862 NTRK1P04629 796 aa4.45□□□□□ -1.7
DEPDC1-204ENST00000489862 SSBP05455 408 aaKnown RBP eCLIP4.45□□□□□ -1.7
DEPDC1-204ENST00000489862 ETFBP38117 255 aa4.45□□□□□ -1.7
DEPDC1-204ENST00000489862 ZNF143P52747 638 aaPredicted RBP4.45□□□□□ -1.7
DEPDC1-204ENST00000489862 INF2Q27J81 1249 aa4.45□□□□□ -1.7
DEPDC1-204ENST00000489862 POMZP3Q6PJE2 187 aa4.45□□□□□ -1.7
DEPDC1-204ENST00000489862 FAM124AQ86V42 546 aa4.45□□□□□ -1.7
DEPDC1-204ENST00000489862 VPS37DQ86XT2 251 aa4.45□□□□□ -1.7
DEPDC1-204ENST00000489862 TRIM59Q8IWR1 403 aa4.45□□□□□ -1.7
DEPDC1-204ENST00000489862 PALM2Q8IXS6 379 aa4.45□□□□□ -1.7
DEPDC1-204ENST00000489862 CRACR2BQ8N4Y2 399 aaPredicted RBP4.45□□□□□ -1.7
DEPDC1-204ENST00000489862 NETO2Q8NC67 525 aa4.45□□□□□ -1.7
DEPDC1-204ENST00000489862 TSPAN17Q96FV3 270 aa4.45□□□□□ -1.7
DEPDC1-204ENST00000489862 MMP19Q99542 508 aa4.45□□□□□ -1.7
DEPDC1-204ENST00000489862 RNF38Q9H0F5 515 aa4.45□□□□□ -1.7
DEPDC1-204ENST00000489862 ACTR10Q9NZ32 417 aa4.45□□□□□ -1.7
DEPDC1-204ENST00000489862 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP4.45□□□□□ -1.7
DEPDC1-204ENST00000489862 MARCH2Q9P0N8 246 aa4.45□□□□□ -1.7
DEPDC1-204ENST00000489862 MRPL42Q9Y6G3 142 aaKnown RBP4.45□□□□□ -1.7
DEPDC1-204ENST00000489862 ABCC9O60706 1549 aa4.45□□□□□ -1.7
DEPDC1-204ENST00000489862 MAP4K4O95819 1239 aaPredicted RBP4.44□□□□□ -1.7
DEPDC1-204ENST00000489862 NAT2P11245 290 aa4.44□□□□□ -1.7
DEPDC1-204ENST00000489862 ATP2B1P20020 1258 aa4.44□□□□□ -1.7
DEPDC1-204ENST00000489862 WWC2Q6AWC2 1192 aa4.44□□□□□ -1.7
DEPDC1-204ENST00000489862 TTLL7Q6ZT98 887 aa4.44□□□□□ -1.7
DEPDC1-204ENST00000489862 LIMS2Q7Z4I7 341 aa4.44□□□□□ -1.7
DEPDC1-204ENST00000489862 FAM178BQ8IXR5 827 aa4.44□□□□□ -1.7
DEPDC1-204ENST00000489862 PLEKHO2Q8TD55 490 aa4.44□□□□□ -1.7
DEPDC1-204ENST00000489862 FRS2Q8WU20 508 aa4.44□□□□□ -1.7
DEPDC1-204ENST00000489862 BTN2A2Q8WVV5 523 aa4.44□□□□□ -1.7
DEPDC1-204ENST00000489862 PEX11GQ96HA9 241 aa4.44□□□□□ -1.7
DEPDC1-204ENST00000489862 NKX2-4Q9H2Z4 354 aa4.44□□□□□ -1.7
DEPDC1-204ENST00000489862 CYP26B1Q9NR63 512 aa4.44□□□□□ -1.7
DEPDC1-204ENST00000489862 BTG4Q9NY30 223 aa4.44□□□□□ -1.7
DEPDC1-204ENST00000489862 NUDT5Q9UKK9 219 aa4.44□□□□□ -1.7
DEPDC1-204ENST00000489862 INVSQ9Y283 1065 aa4.44□□□□□ -1.7
DEPDC1-204ENST00000489862 NPIPB8E9PQR5 432 aa4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 ARNTLO00327 626 aa4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 ITGAVP06756 1048 aa4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 DLX2Q07687 328 aaPredicted RBP4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 RBL2Q08999 1139 aa4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 SURF1Q15526 300 aa4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 PTPROQ16827 1216 aa4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 SV2CQ496J9 727 aa4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 TEX2Q8IWB9 1127 aa4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 SLC43A3Q8NBI5 491 aa4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 SMARCC2Q8TAQ2 1214 aa4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 NOX5Q96PH1 765 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms