RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 PLIN1O60240 522 aa8□□□□□ -1.13
PRPF40A-210ENST00000489741 LIG1P18858 919 aa8□□□□□ -1.13
PRPF40A-210ENST00000489741 GRIK1P39086 918 aa8□□□□□ -1.13
PRPF40A-210ENST00000489741 GYG1P46976 350 aa8□□□□□ -1.13
PRPF40A-210ENST00000489741 ANKRD44Q8N8A2 993 aa8□□□□□ -1.13
PRPF40A-210ENST00000489741 VGLL2Q8N8G2 317 aa8□□□□□ -1.13
PRPF40A-210ENST00000489741 C3orf58Q8NDZ4 430 aa8□□□□□ -1.13
PRPF40A-210ENST00000489741 KCNB2Q92953 911 aa8□□□□□ -1.13
PRPF40A-210ENST00000489741 PTPN18Q99952 460 aa8□□□□□ -1.13
PRPF40A-210ENST00000489741 OSBPL7Q9BZF2 842 aa8□□□□□ -1.13
PRPF40A-210ENST00000489741 CNNM1Q9NRU3 951 aa8□□□□□ -1.13
PRPF40A-210ENST00000489741 FAM105AQ9NUU6 356 aa8□□□□□ -1.13
PRPF40A-210ENST00000489741 JAG2Q9Y219 1238 aa8□□□□□ -1.13
PRPF40A-210ENST00000489741 COBLO75128 1261 aa7.99□□□□□ -1.13
PRPF40A-210ENST00000489741 ASPAP45381 313 aa7.99□□□□□ -1.13
PRPF40A-210ENST00000489741 HDLBPQ00341 1268 aaKnown RBP7.99□□□□□ -1.13
PRPF40A-210ENST00000489741 MAP7Q14244 749 aa7.99□□□□□ -1.13
PRPF40A-210ENST00000489741 LRRC24Q50LG9 513 aa7.99□□□□□ -1.13
PRPF40A-210ENST00000489741 TAF7LQ5H9L4 462 aa7.99□□□□□ -1.13
PRPF40A-210ENST00000489741 MFSD14BQ5SR56 506 aa7.99□□□□□ -1.13
PRPF40A-210ENST00000489741 SLC4A10Q6U841 1118 aa7.99□□□□□ -1.13
PRPF40A-210ENST00000489741 ANKRD13AQ8IZ07 590 aa7.99□□□□□ -1.13
PRPF40A-210ENST00000489741 CEP44Q9C0F1 390 aa7.99□□□□□ -1.13
PRPF40A-210ENST00000489741 USP44Q9H0E7 712 aa7.99□□□□□ -1.13
PRPF40A-210ENST00000489741 BICC1Q9H694 974 aaKnown RBP7.99□□□□□ -1.13
PRPF40A-210ENST00000489741 TDRD3Q9H7E2 651 aaKnown RBP7.99□□□□□ -1.13
PRPF40A-210ENST00000489741 KRT82Q9NSB4 513 aa7.99□□□□□ -1.13
PRPF40A-210ENST00000489741 PPM1HQ9ULR3 514 aa7.99□□□□□ -1.13
PRPF40A-210ENST00000489741 MYH3P11055 1940 aa7.99□□□□□ -1.13
PRPF40A-210ENST00000489741 MROH5Q6ZUA9 1318 aa7.99□□□□□ -1.13
PRPF40A-210ENST00000489741 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.98□□□□□ -1.13
PRPF40A-210ENST00000489741 ANKRD33BA6NCL7 494 aa7.98□□□□□ -1.13
PRPF40A-210ENST00000489741 FBXO24O75426 580 aa7.98□□□□□ -1.13
PRPF40A-210ENST00000489741 PDE8BO95263 885 aa7.98□□□□□ -1.13
PRPF40A-210ENST00000489741 NFICP08651 508 aa7.98□□□□□ -1.13
PRPF40A-210ENST00000489741 SLFN14P0C7P3 912 aa7.98□□□□□ -1.13
PRPF40A-210ENST00000489741 FGFR2P21802 821 aa7.98□□□□□ -1.13
PRPF40A-210ENST00000489741 ZEB1P37275 1124 aaPredicted RBP7.98□□□□□ -1.13
PRPF40A-210ENST00000489741 CRKP46108 304 aa7.98□□□□□ -1.13
PRPF40A-210ENST00000489741 CD97P48960 835 aa7.98□□□□□ -1.13
PRPF40A-210ENST00000489741 CAP1Q01518 475 aa7.98□□□□□ -1.13
PRPF40A-210ENST00000489741 TNFAIP1Q13829 316 aa7.98□□□□□ -1.13
PRPF40A-210ENST00000489741 FAM9BQ8IZU0 186 aa7.98□□□□□ -1.13
PRPF40A-210ENST00000489741 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.98□□□□□ -1.13
PRPF40A-210ENST00000489741 EZH1Q92800 747 aaPredicted RBP7.98□□□□□ -1.13
PRPF40A-210ENST00000489741 WDR89Q96FK6 387 aaPredicted RBP7.98□□□□□ -1.13
PRPF40A-210ENST00000489741 C12orf49Q9H741 205 aa7.98□□□□□ -1.13
PRPF40A-210ENST00000489741 VEZTQ9HBM0 779 aa7.98□□□□□ -1.13
PRPF40A-210ENST00000489741 CBX8Q9HC52 389 aa7.98□□□□□ -1.13
PRPF40A-210ENST00000489741 PPP1R9AQ9ULJ8 1098 aa7.98□□□□□ -1.13
PRPF40A-210ENST00000489741 TTF2Q9UNY4 1162 aaKnown RBP7.98□□□□□ -1.13
PRPF40A-210ENST00000489741 ZNF862O60290 1169 aa7.97□□□□□ -1.13
PRPF40A-210ENST00000489741 NME2P22392 152 aa7.97□□□□□ -1.13
PRPF40A-210ENST00000489741 ARNTP27540 789 aa7.97□□□□□ -1.13
PRPF40A-210ENST00000489741 RFX5P48382 616 aaPredicted RBP7.97□□□□□ -1.13
PRPF40A-210ENST00000489741 RBM5P52756 815 aaKnown RBP eCLIP7.97□□□□□ -1.13
PRPF40A-210ENST00000489741 ID3Q02535 119 aa7.97□□□□□ -1.13
PRPF40A-210ENST00000489741 CRHR2Q13324 411 aa7.97□□□□□ -1.13
PRPF40A-210ENST00000489741 APOBEC3HQ6NTF7 200 aaKnown RBP7.97□□□□□ -1.13
PRPF40A-210ENST00000489741 OTOP1Q7RTM1 612 aa7.97□□□□□ -1.13
PRPF40A-210ENST00000489741 TRMT2AQ8IZ69 625 aaKnown RBP7.97□□□□□ -1.13
PRPF40A-210ENST00000489741 SSH1Q8WYL5 1049 aa7.97□□□□□ -1.13
PRPF40A-210ENST00000489741 ZDHHC15Q96MV8 337 aa7.97□□□□□ -1.13
PRPF40A-210ENST00000489741 TBC1D32Q96NH3 1257 aa7.97□□□□□ -1.13
PRPF40A-210ENST00000489741 OSBPL1AQ9BXW6 950 aa7.97□□□□□ -1.13
PRPF40A-210ENST00000489741 EMILIN2Q9BXX0 1053 aa7.97□□□□□ -1.13
PRPF40A-210ENST00000489741 SEMA6CQ9H3T2 930 aa7.97□□□□□ -1.13
PRPF40A-210ENST00000489741 PIDD1Q9HB75 910 aa7.97□□□□□ -1.13
PRPF40A-210ENST00000489741 FAM8A1Q9UBU6 413 aa7.97□□□□□ -1.13
PRPF40A-210ENST00000489741 SUGT1Q9Y2Z0 365 aa7.97□□□□□ -1.13
PRPF40A-210ENST00000489741 DAGLAQ9Y4D2 1042 aa7.97□□□□□ -1.13
PRPF40A-210ENST00000489741 SAMM50Q9Y512 469 aa7.97□□□□□ -1.13
PRPF40A-210ENST00000489741 AKAP11Q9UKA4 1901 aa7.97□□□□□ -1.13
PRPF40A-210ENST00000489741 PTPRCP08575 1304 aa7.97□□□□□ -1.13
PRPF40A-210ENST00000489741 KIF16BQ96L93 1317 aa7.97□□□□□ -1.13
PRPF40A-210ENST00000489741 SYNGAP1Q96PV0 1343 aa7.97□□□□□ -1.13
PRPF40A-210ENST00000489741 CACNA1FO60840 1977 aa7.97□□□□□ -1.13
PRPF40A-210ENST00000489741 PRR19A6NJB7 356 aa7.96□□□□□ -1.14
PRPF40A-210ENST00000489741 TCP10L2B9ZVM9 353 aa7.96□□□□□ -1.14
PRPF40A-210ENST00000489741 TMPRSS2O15393 492 aa7.96□□□□□ -1.14
PRPF40A-210ENST00000489741 PRPF40AO75400 957 aaKnown RBP7.96□□□□□ -1.14
PRPF40A-210ENST00000489741 USP17L7P0C7H9 530 aa7.96□□□□□ -1.14
PRPF40A-210ENST00000489741 SLFN5Q08AF3 891 aa7.96□□□□□ -1.14
PRPF40A-210ENST00000489741 CAVIN4Q5BKX8 364 aa7.96□□□□□ -1.14
PRPF40A-210ENST00000489741 FKBP1CQ5VVH2 108 aa7.96□□□□□ -1.14
PRPF40A-210ENST00000489741 INTS3Q68E01 1043 aaKnown RBP7.96□□□□□ -1.14
PRPF40A-210ENST00000489741 OTUD7BQ6GQQ9 843 aa7.96□□□□□ -1.14
PRPF40A-210ENST00000489741 PDZD3Q86UT5 571 aa7.96□□□□□ -1.14
PRPF40A-210ENST00000489741 STK35Q8TDR2 534 aa7.96□□□□□ -1.14
PRPF40A-210ENST00000489741 TBC1D22AQ8WUA7 517 aa7.96□□□□□ -1.14
PRPF40A-210ENST00000489741 BRI3BPQ8WY22 251 aa7.96□□□□□ -1.14
PRPF40A-210ENST00000489741 OPTNQ96CV9 577 aa7.96□□□□□ -1.14
PRPF40A-210ENST00000489741 FRMD6Q96NE9 622 aa7.96□□□□□ -1.14
PRPF40A-210ENST00000489741 NECAB3Q96P71 396 aaPredicted RBP7.96□□□□□ -1.14
PRPF40A-210ENST00000489741 TMEM39BQ9GZU3 492 aa7.96□□□□□ -1.14
PRPF40A-210ENST00000489741 ATXN3LQ9H3M9 355 aa7.96□□□□□ -1.14
PRPF40A-210ENST00000489741 ACSS3Q9H6R3 686 aa7.96□□□□□ -1.14
PRPF40A-210ENST00000489741 PRKAG2Q9UGJ0 569 aa7.96□□□□□ -1.14
PRPF40A-210ENST00000489741 PTPN22Q9Y2R2 807 aa7.96□□□□□ -1.14
PRPF40A-210ENST00000489741 TRIM17Q9Y577 477 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms