RNA–Protein interactions for RNA: ENST00000488765.1

MCF2L-229, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 2

Gene MCF2L, Length 3,205 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-229ENST00000488765 SPIRE2Q8WWL2 714 aa17.76■□□□□ 0.43
MCF2L-229ENST00000488765 SYT15Q9BQS2 421 aa17.76■□□□□ 0.43
MCF2L-229ENST00000488765 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.76■□□□□ 0.43
MCF2L-229ENST00000488765 CELF4Q9BZC1 486 aaKnown RBP17.76■□□□□ 0.43
MCF2L-229ENST00000488765 NKX1-2Q9UD57 310 aaPredicted RBP17.76■□□□□ 0.43
MCF2L-229ENST00000488765 hCG_2014768A0A024R1R8 64 aa17.76■□□□□ 0.43
MCF2L-229ENST00000488765 DHX9Q08211 1270 aaKnown RBP17.76■□□□□ 0.43
MCF2L-229ENST00000488765 BLMHQ13867 455 aa17.76■□□□□ 0.43
MCF2L-229ENST00000488765 CWF19L1Q69YN2 538 aaKnown RBP17.76■□□□□ 0.43
MCF2L-229ENST00000488765 KDM4CQ9H3R0 1056 aa17.76■□□□□ 0.43
MCF2L-229ENST00000488765 EXOC1Q9NV70 894 aa17.76■□□□□ 0.43
MCF2L-229ENST00000488765 PCDH11XQ9BZA7 1347 aa17.75■□□□□ 0.43
MCF2L-229ENST00000488765 PCDH11YQ9BZA8 1340 aa17.75■□□□□ 0.43
MCF2L-229ENST00000488765 KCNK3O14649 394 aa17.75■□□□□ 0.43
MCF2L-229ENST00000488765 KIF5BP33176 963 aa17.75■□□□□ 0.43
MCF2L-229ENST00000488765 LACTB2Q53H82 288 aaPredicted RBP17.75■□□□□ 0.43
MCF2L-229ENST00000488765 ATG9AQ7Z3C6 839 aa17.75■□□□□ 0.43
MCF2L-229ENST00000488765 MARCH10Q8NA82 808 aaPredicted RBP17.75■□□□□ 0.43
MCF2L-229ENST00000488765 IGDCC4Q8TDY8 1250 aa17.75■□□□□ 0.43
MCF2L-229ENST00000488765 LY9Q9HBG7 655 aa17.75■□□□□ 0.43
MCF2L-229ENST00000488765 MKRN4PQ13434 485 aaPredicted RBP17.75■□□□□ 0.43
MCF2L-229ENST00000488765 TRPM8Q7Z2W7 1104 aa17.75■□□□□ 0.43
MCF2L-229ENST00000488765 NAF1Q96HR8 494 aaKnown RBP17.75■□□□□ 0.43
MCF2L-229ENST00000488765 XPO6Q96QU8 1125 aaKnown RBP17.75■□□□□ 0.43
MCF2L-229ENST00000488765 MARF1Q9Y4F3 1742 aaKnown RBP17.75■□□□□ 0.43
MCF2L-229ENST00000488765 SEMA3EO15041 775 aa17.74■□□□□ 0.43
MCF2L-229ENST00000488765 NQO1P15559 274 aaKnown RBP17.74■□□□□ 0.43
MCF2L-229ENST00000488765 COPB2P35606 906 aa17.74■□□□□ 0.43
MCF2L-229ENST00000488765 RFC5P40937 340 aa17.74■□□□□ 0.43
MCF2L-229ENST00000488765 TNS3Q68CZ2 1445 aa17.74■□□□□ 0.43
MCF2L-229ENST00000488765 ZNF507Q8TCN5 953 aa17.74■□□□□ 0.43
MCF2L-229ENST00000488765 SHISA4Q96DD7 197 aa17.74■□□□□ 0.43
MCF2L-229ENST00000488765 RPS6KC1Q96S38 1066 aa17.74■□□□□ 0.43
MCF2L-229ENST00000488765 AMACRQ9UHK6 382 aa17.74■□□□□ 0.43
MCF2L-229ENST00000488765 SMIM22K7EJ46 135 aa17.74■□□□□ 0.43
MCF2L-229ENST00000488765 ORC4O43929 436 aa17.74■□□□□ 0.43
MCF2L-229ENST00000488765 ATP2A2P16615 1042 aaKnown RBP17.74■□□□□ 0.43
MCF2L-229ENST00000488765 SH3RF1Q7Z6J0 888 aa17.74■□□□□ 0.43
MCF2L-229ENST00000488765 CNBD1Q8NA66 436 aa17.74■□□□□ 0.43
MCF2L-229ENST00000488765 DLGAP2Q9P1A6 1054 aa17.74■□□□□ 0.43
MCF2L-229ENST00000488765 KDM4FA0A1W2PPD8 638 aa17.74■□□□□ 0.43
MCF2L-229ENST00000488765 CEP104O60308 925 aa17.74■□□□□ 0.43
MCF2L-229ENST00000488765 ERFP50548 548 aa17.74■□□□□ 0.43
MCF2L-229ENST00000488765 SYCP3Q8IZU3 236 aa17.74■□□□□ 0.43
MCF2L-229ENST00000488765 OCEL1Q9H607 264 aa17.74■□□□□ 0.43
MCF2L-229ENST00000488765 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.74■□□□□ 0.43
MCF2L-229ENST00000488765 CEP126Q9P2H0 1117 aa17.74■□□□□ 0.43
MCF2L-229ENST00000488765 MED1Q15648 1581 aaPredicted RBP17.73■□□□□ 0.43
MCF2L-229ENST00000488765 IFI35P80217 286 aaPredicted RBP17.73■□□□□ 0.43
MCF2L-229ENST00000488765 ZBED6P86452 979 aa17.73■□□□□ 0.43
MCF2L-229ENST00000488765 RTN1Q16799 776 aa17.73■□□□□ 0.43
MCF2L-229ENST00000488765 UBAP2Q5T6F2 1119 aaKnown RBP17.73■□□□□ 0.43
MCF2L-229ENST00000488765 HHATQ5VTY9 493 aa17.73■□□□□ 0.43
MCF2L-229ENST00000488765 LRP10Q7Z4F1 713 aa17.73■□□□□ 0.43
MCF2L-229ENST00000488765 DRAXINQ8NBI3 349 aaPredicted RBP17.73■□□□□ 0.43
MCF2L-229ENST00000488765 SAMD15Q9P1V8 674 aa17.73■□□□□ 0.43
MCF2L-229ENST00000488765 LRRD1A4D1F6 860 aa17.73■□□□□ 0.43
MCF2L-229ENST00000488765 LRRC53A6NM62 1247 aa17.73■□□□□ 0.43
MCF2L-229ENST00000488765 ADAMTS3O15072 1205 aa17.73■□□□□ 0.43
MCF2L-229ENST00000488765 ITGA6P23229 1130 aa17.73■□□□□ 0.43
MCF2L-229ENST00000488765 SLC5A9Q2M3M2 681 aa17.73■□□□□ 0.43
MCF2L-229ENST00000488765 SOGA3Q5TF21 947 aa17.73■□□□□ 0.43
MCF2L-229ENST00000488765 OTUD6AQ7L8S5 288 aa17.73■□□□□ 0.43
MCF2L-229ENST00000488765 PURBQ96QR8 312 aaKnown RBP17.73■□□□□ 0.43
MCF2L-229ENST00000488765 HOMER3Q9NSC5 361 aa17.73■□□□□ 0.43
MCF2L-229ENST00000488765 HEG1Q9ULI3 1381 aa17.72■□□□□ 0.43
MCF2L-229ENST00000488765 H0YGN5 161 aa17.72■□□□□ 0.43
MCF2L-229ENST00000488765 FMNL1O95466 1100 aaPredicted RBP17.72■□□□□ 0.43
MCF2L-229ENST00000488765 PRPHP41219 470 aa17.72■□□□□ 0.43
MCF2L-229ENST00000488765 MEA1Q16626 185 aa17.72■□□□□ 0.43
MCF2L-229ENST00000488765 TMEM154Q6P9G4 183 aa17.72■□□□□ 0.43
MCF2L-229ENST00000488765 DDX23Q9BUQ8 820 aaKnown RBP17.72■□□□□ 0.43
MCF2L-229ENST00000488765 PACSIN1Q9BY11 444 aa17.72■□□□□ 0.43
MCF2L-229ENST00000488765 GGA2Q9UJY4 613 aa17.72■□□□□ 0.43
MCF2L-229ENST00000488765 NFS1Q9Y697 457 aa17.72■□□□□ 0.43
MCF2L-229ENST00000488765 V9GY48 417 aaPredicted RBP17.72■□□□□ 0.43
MCF2L-229ENST00000488765 RNF8O76064 485 aa17.72■□□□□ 0.43
MCF2L-229ENST00000488765 NOX5Q96PH1 765 aa17.72■□□□□ 0.43
MCF2L-229ENST00000488765 TRIM4Q9C037 500 aa17.72■□□□□ 0.43
MCF2L-229ENST00000488765 AATFQ9NY61 560 aaKnown RBP eCLIP17.72■□□□□ 0.43
MCF2L-229ENST00000488765 ADAM22Q9P0K1 906 aa17.72■□□□□ 0.43
MCF2L-229ENST00000488765 H7C1D1 291 aa17.72■□□□□ 0.43
MCF2L-229ENST00000488765 FESP07332 822 aa17.72■□□□□ 0.43
MCF2L-229ENST00000488765 ITGA4P13612 1032 aa17.72■□□□□ 0.43
MCF2L-229ENST00000488765 DNM2P50570 870 aa17.72■□□□□ 0.43
MCF2L-229ENST00000488765 ZNF658Q5TYW1 1059 aaPredicted RBP17.72■□□□□ 0.43
MCF2L-229ENST00000488765 ANO7Q6IWH7 933 aa17.72■□□□□ 0.43
MCF2L-229ENST00000488765 KIF6Q6ZMV9 814 aa17.72■□□□□ 0.43
MCF2L-229ENST00000488765 KLHL23Q8NBE8 558 aa17.72■□□□□ 0.43
MCF2L-229ENST00000488765 CNOT6LQ96LI5 555 aaKnown RBP17.72■□□□□ 0.43
MCF2L-229ENST00000488765 TANGO6Q9C0B7 1094 aa17.72■□□□□ 0.43
MCF2L-229ENST00000488765 NUGGCQ68CJ6 796 aa17.71■□□□□ 0.43
MCF2L-229ENST00000488765 PHC3Q8NDX5 983 aa17.71■□□□□ 0.43
MCF2L-229ENST00000488765 PSMD1Q99460 953 aa17.71■□□□□ 0.43
MCF2L-229ENST00000488765 UBE2OQ9C0C9 1292 aaKnown RBP17.71■□□□□ 0.43
MCF2L-229ENST00000488765 CNNM1Q9NRU3 951 aa17.71■□□□□ 0.43
MCF2L-229ENST00000488765 TRMT112Q9UI30 125 aaKnown RBP17.71■□□□□ 0.43
MCF2L-229ENST00000488765 IQSEC3Q9UPP2 1182 aaPredicted RBP17.71■□□□□ 0.43
MCF2L-229ENST00000488765 NCALDP61601 193 aa17.71■□□□□ 0.43
MCF2L-229ENST00000488765 FOXO4P98177 505 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms