RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 SPDYE3A6NKU9 549 aa23.47■■□□□ 1.35
HDAC4-209ENST00000487617 ICAM3P32942 547 aa23.47■■□□□ 1.35
HDAC4-209ENST00000487617 PTPN11Q06124 597 aaPredicted RBP23.47■■□□□ 1.35
HDAC4-209ENST00000487617 GPR153Q6NV75 609 aa23.47■■□□□ 1.35
HDAC4-209ENST00000487617 RUFY3Q7L099 469 aa23.47■■□□□ 1.35
HDAC4-209ENST00000487617 KAT2BQ92831 832 aa23.47■■□□□ 1.35
HDAC4-209ENST00000487617 ZSWIM6Q9HCJ5 1215 aa23.47■■□□□ 1.35
HDAC4-209ENST00000487617 UMODL1Q5DID0 1318 aa23.47■■□□□ 1.35
HDAC4-209ENST00000487617 SPATA31C2B4DYI2 1134 aa23.46■■□□□ 1.35
HDAC4-209ENST00000487617 hCG_1984214I3L0E3 225 aa23.46■■□□□ 1.35
HDAC4-209ENST00000487617 FIBPO43427 364 aa23.46■■□□□ 1.35
HDAC4-209ENST00000487617 CYP2C9P11712 490 aa23.46■■□□□ 1.35
HDAC4-209ENST00000487617 HSDL1Q3SXM5 330 aa23.46■■□□□ 1.35
HDAC4-209ENST00000487617 PPP1R18Q6NYC8 613 aa23.46■■□□□ 1.35
HDAC4-209ENST00000487617 ZNF713Q8N859 430 aaPredicted RBP23.46■■□□□ 1.35
HDAC4-209ENST00000487617 PCDHA6Q9UN73 950 aa23.46■■□□□ 1.35
HDAC4-209ENST00000487617 PCDHA8Q9Y5H6 950 aa23.46■■□□□ 1.35
HDAC4-209ENST00000487617 CYP46A1Q9Y6A2 500 aa23.46■■□□□ 1.35
HDAC4-209ENST00000487617 STXBP3O00186 592 aa23.45■■□□□ 1.34
HDAC4-209ENST00000487617 PPFIA4O75335 1185 aa23.45■■□□□ 1.34
HDAC4-209ENST00000487617 ZNF286BP0CG31 522 aa23.45■■□□□ 1.34
HDAC4-209ENST00000487617 CCL23P55773 120 aa23.45■■□□□ 1.34
HDAC4-209ENST00000487617 TYW1BQ6NUM6 668 aa23.45■■□□□ 1.34
HDAC4-209ENST00000487617 NLRX1Q86UT6 975 aa23.45■■□□□ 1.34
HDAC4-209ENST00000487617 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.45■■□□□ 1.344e-6■■■□□ 18.4
HDAC4-209ENST00000487617 KATNAL1Q9BW62 490 aa23.45■■□□□ 1.34
HDAC4-209ENST00000487617 EHMT1Q9H9B1 1298 aa23.45■■□□□ 1.34
HDAC4-209ENST00000487617 RIC8AQ9NPQ8 531 aa23.45■■□□□ 1.34
HDAC4-209ENST00000487617 BARHL2Q9NY43 387 aa23.45■■□□□ 1.34
HDAC4-209ENST00000487617 NOD1Q9Y239 953 aa23.45■■□□□ 1.34
HDAC4-209ENST00000487617 SCN10AQ9Y5Y9 1956 aa23.45■■□□□ 1.34
HDAC4-209ENST00000487617 LAMA3Q16787 3333 aa23.44■■□□□ 1.34
HDAC4-209ENST00000487617 ACRP10323 421 aa23.44■■□□□ 1.34
HDAC4-209ENST00000487617 HOXD8P13378 290 aaPredicted RBP23.44■■□□□ 1.34
HDAC4-209ENST00000487617 PSEN2P49810 448 aa23.44■■□□□ 1.34
HDAC4-209ENST00000487617 ADCY7P51828 1080 aa23.44■■□□□ 1.34
HDAC4-209ENST00000487617 SEMA3FQ13275 785 aa23.44■■□□□ 1.34
HDAC4-209ENST00000487617 NEDD9Q14511 834 aa23.44■■□□□ 1.34
HDAC4-209ENST00000487617 ALG1Q9BT22 464 aa23.44■■□□□ 1.34
HDAC4-209ENST00000487617 TM6SF1Q9BZW5 370 aa23.44■■□□□ 1.34
HDAC4-209ENST00000487617 BCAS3Q9H6U6 928 aa23.44■■□□□ 1.34
HDAC4-209ENST00000487617 NID2Q14112 1375 aa23.43■■□□□ 1.34
HDAC4-209ENST00000487617 SMCO2A6NFE2 343 aa23.43■■□□□ 1.34
HDAC4-209ENST00000487617 F2P00734 622 aa23.43■■□□□ 1.34
HDAC4-209ENST00000487617 MFSD10Q14728 455 aa23.43■■□□□ 1.34
HDAC4-209ENST00000487617 PFKFB3Q16875 520 aaPredicted RBP23.43■■□□□ 1.34
HDAC4-209ENST00000487617 TMEM240Q5SV17 173 aa23.43■■□□□ 1.34
HDAC4-209ENST00000487617 C16orf59Q7L2K0 433 aa23.43■■□□□ 1.34
HDAC4-209ENST00000487617 CYFIP1Q7L576 1253 aa23.43■■□□□ 1.34
HDAC4-209ENST00000487617 DEFB123Q8N688 67 aa23.43■■□□□ 1.34
HDAC4-209ENST00000487617 WNT8AQ9H1J5 351 aa23.43■■□□□ 1.34
HDAC4-209ENST00000487617 IL23AQ9NPF7 189 aa23.43■■□□□ 1.34
HDAC4-209ENST00000487617 NOP56O00567 594 aaKnown RBP23.42■■□□□ 1.34
HDAC4-209ENST00000487617 SCG2P13521 617 aa23.42■■□□□ 1.34
HDAC4-209ENST00000487617 PDIA3P30101 505 aaKnown RBP23.42■■□□□ 1.34
HDAC4-209ENST00000487617 TOB2Q14106 344 aaPredicted RBP23.42■■□□□ 1.34
HDAC4-209ENST00000487617 PTGISQ16647 500 aa23.42■■□□□ 1.34
HDAC4-209ENST00000487617 KIAA0753Q2KHM9 967 aa23.42■■□□□ 1.34
HDAC4-209ENST00000487617 PSRC1Q6PGN9 363 aaPredicted RBP23.42■■□□□ 1.34
HDAC4-209ENST00000487617 METTL7BQ6UX53 244 aa23.42■■□□□ 1.34
HDAC4-209ENST00000487617 SESTD1Q86VW0 696 aa23.42■■□□□ 1.34
HDAC4-209ENST00000487617 TEX2Q8IWB9 1127 aa23.42■■□□□ 1.34
HDAC4-209ENST00000487617 C7orf31Q8N865 590 aa23.42■■□□□ 1.34
HDAC4-209ENST00000487617 GPRASP2Q96D09 838 aa23.42■■□□□ 1.34
HDAC4-209ENST00000487617 UPF3BQ9BZI7 483 aaKnown RBP23.42■■□□□ 1.34
HDAC4-209ENST00000487617 EVCP57679 992 aa23.41■■□□□ 1.34
HDAC4-209ENST00000487617 CCT2P78371 535 aaKnown RBP23.41■■□□□ 1.34
HDAC4-209ENST00000487617 AKAP17AQ02040 695 aaKnown RBP23.41■■□□□ 1.34
HDAC4-209ENST00000487617 GDF6Q6KF10 455 aaPredicted RBP23.41■■□□□ 1.34
HDAC4-209ENST00000487617 ZNF365Q70YC5 407 aa23.41■■□□□ 1.34
HDAC4-209ENST00000487617 Q7L0L9 218 aa23.41■■□□□ 1.34
HDAC4-209ENST00000487617 SCLYQ96I15 445 aa23.41■■□□□ 1.34
HDAC4-209ENST00000487617 SENP7Q9BQF6 1050 aa23.41■■□□□ 1.34
HDAC4-209ENST00000487617 GLT8D2Q9H1C3 349 aa23.41■■□□□ 1.34
HDAC4-209ENST00000487617 HDAC6Q9UBN7 1215 aa23.41■■□□□ 1.34
HDAC4-209ENST00000487617 HAS3O00219 553 aa23.4■■□□□ 1.34
HDAC4-209ENST00000487617 PRPF3O43395 683 aaKnown RBP23.4■■□□□ 1.34
HDAC4-209ENST00000487617 FOSP01100 380 aaPredicted RBP23.4■■□□□ 1.34
HDAC4-209ENST00000487617 ITGB5P18084 799 aa23.4■■□□□ 1.34
HDAC4-209ENST00000487617 SMAD3P84022 425 aaKnown RBP23.4■■□□□ 1.34
HDAC4-209ENST00000487617 RETREG2Q8NC44 543 aa23.4■■□□□ 1.34
HDAC4-209ENST00000487617 PHKBQ93100 1093 aa23.4■■□□□ 1.34
HDAC4-209ENST00000487617 CDHR1Q96JP9 859 aa23.4■■□□□ 1.34
HDAC4-209ENST00000487617 PGBD1Q96JS3 809 aa23.4■■□□□ 1.34
HDAC4-209ENST00000487617 NCOA5Q9HCD5 579 aaKnown RBP23.4■■□□□ 1.34
HDAC4-209ENST00000487617 PDRG1Q9NUG6 133 aa23.4■■□□□ 1.34
HDAC4-209ENST00000487617 GTF2IRD1Q9UHL9 959 aa23.4■■□□□ 1.34
HDAC4-209ENST00000487617 UBIAD1Q9Y5Z9 338 aa23.4■■□□□ 1.34
HDAC4-209ENST00000487617 PPFIA3O75145 1194 aa23.39■■□□□ 1.33
HDAC4-209ENST00000487617 SP4Q02446 784 aa23.39■■□□□ 1.33
HDAC4-209ENST00000487617 BFSP2Q13515 415 aa23.39■■□□□ 1.33
HDAC4-209ENST00000487617 NTRK3Q16288 839 aa23.39■■□□□ 1.33
HDAC4-209ENST00000487617 RPUSD2Q8IZ73 545 aaKnown RBP23.39■■□□□ 1.33
HDAC4-209ENST00000487617 GIMAP8Q8ND71 665 aaPredicted RBP23.39■■□□□ 1.33
HDAC4-209ENST00000487617 GPR20Q99678 358 aa23.39■■□□□ 1.33
HDAC4-209ENST00000487617 LARP6Q9BRS8 491 aaKnown RBP23.39■■□□□ 1.33
HDAC4-209ENST00000487617 C16orf70Q9BSU1 422 aa23.39■■□□□ 1.33
HDAC4-209ENST00000487617 ANO3Q9BYT9 981 aa23.39■■□□□ 1.33
HDAC4-209ENST00000487617 TMEM260Q9NX78 707 aa23.39■■□□□ 1.33
HDAC4-209ENST00000487617 SZT2Q5T011 3432 aa23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms