RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 NOD1Q9Y239 953 aa19.09■□□□□ 0.65
TRIM54-203ENST00000485306 SCN10AQ9Y5Y9 1956 aa19.09■□□□□ 0.65
TRIM54-203ENST00000485306 KLF18A0A0U1RQI7 1052 aa19.08■□□□□ 0.64
TRIM54-203ENST00000485306 MCM2P49736 904 aa19.08■□□□□ 0.64
TRIM54-203ENST00000485306 CCL23P55773 120 aa19.08■□□□□ 0.64
TRIM54-203ENST00000485306 TMEM240Q5SV17 173 aa19.08■□□□□ 0.64
TRIM54-203ENST00000485306 Q6ZUG5 572 aa19.08■□□□□ 0.64
TRIM54-203ENST00000485306 ZNF365Q70YC5 407 aa19.08■□□□□ 0.64
TRIM54-203ENST00000485306 CCDC82Q8N4S0 544 aa19.08■□□□□ 0.64
TRIM54-203ENST00000485306 PPTC7Q8NI37 304 aa19.08■□□□□ 0.64
TRIM54-203ENST00000485306 MTIF3Q9H2K0 278 aaKnown RBP19.08■□□□□ 0.64
TRIM54-203ENST00000485306 PIK3CDO00329 1044 aa19.07■□□□□ 0.64
TRIM54-203ENST00000485306 PPFIA4O75335 1185 aa19.07■□□□□ 0.64
TRIM54-203ENST00000485306 RGS20O76081 388 aa19.07■□□□□ 0.64
TRIM54-203ENST00000485306 FGBP02675 491 aa19.07■□□□□ 0.64
TRIM54-203ENST00000485306 ACRP10323 421 aa19.07■□□□□ 0.64
TRIM54-203ENST00000485306 RTN1Q16799 776 aa19.07■□□□□ 0.64
TRIM54-203ENST00000485306 CELF3Q5SZQ8 465 aaKnown RBP19.07■□□□□ 0.64
TRIM54-203ENST00000485306 XRRA1Q6P2D8 792 aa19.07■□□□□ 0.64
TRIM54-203ENST00000485306 C16orf59Q7L2K0 433 aa19.07■□□□□ 0.64
TRIM54-203ENST00000485306 IL31RAQ8NI17 732 aa19.07■□□□□ 0.64
TRIM54-203ENST00000485306 KATNAL1Q9BW62 490 aa19.07■□□□□ 0.64
TRIM54-203ENST00000485306 PSTPIP2Q9H939 334 aa19.07■□□□□ 0.64
TRIM54-203ENST00000485306 MLXIPQ9HAP2 919 aa19.07■□□□□ 0.64
TRIM54-203ENST00000485306 GOLGA8AA7E2F4 631 aa19.06■□□□□ 0.64
TRIM54-203ENST00000485306 GOLGA8BA8MQT2 603 aa19.06■□□□□ 0.64
TRIM54-203ENST00000485306 GGPS1O95749 300 aa19.06■□□□□ 0.64
TRIM54-203ENST00000485306 CYP2C9P11712 490 aa19.06■□□□□ 0.64
TRIM54-203ENST00000485306 RCAN1P53805 252 aa19.06■□□□□ 0.64
TRIM54-203ENST00000485306 APOBRQ0VD83 1088 aa19.06■□□□□ 0.64
TRIM54-203ENST00000485306 MYSM1Q5VVJ2 828 aa19.06■□□□□ 0.64
TRIM54-203ENST00000485306 USP17L6PQ6QN14 398 aa19.06■□□□□ 0.64
TRIM54-203ENST00000485306 RETREG2Q8NC44 543 aa19.06■□□□□ 0.64
TRIM54-203ENST00000485306 BRF1Q92994 677 aa19.06■□□□□ 0.64
TRIM54-203ENST00000485306 SPATA33Q96N06 139 aa19.06■□□□□ 0.64
TRIM54-203ENST00000485306 STXBP5LQ9Y2K9 1186 aa19.06■□□□□ 0.64
TRIM54-203ENST00000485306 FRMPD4Q14CM0 1322 aa19.05■□□□□ 0.64
TRIM54-203ENST00000485306 UMODL1Q5DID0 1318 aa19.05■□□□□ 0.64
TRIM54-203ENST00000485306 CNTNAP5Q8WYK1 1306 aa19.05■□□□□ 0.64
TRIM54-203ENST00000485306 hCG_1642624A0A1W2PR95 340 aa19.05■□□□□ 0.64
TRIM54-203ENST00000485306 EVCP57679 992 aa19.05■□□□□ 0.64
TRIM54-203ENST00000485306 C7orf31Q8N865 590 aa19.05■□□□□ 0.64
TRIM54-203ENST00000485306 ZFP91Q96JP5 570 aaPredicted RBP19.05■□□□□ 0.64
TRIM54-203ENST00000485306 FAM161BQ96MY7 647 aa19.05■□□□□ 0.64
TRIM54-203ENST00000485306 FAM217BQ9NTX9 383 aaPredicted RBP19.05■□□□□ 0.64
TRIM54-203ENST00000485306 NAP1L2Q9ULW6 460 aaPredicted RBP19.05■□□□□ 0.64
TRIM54-203ENST00000485306 MEIS2O14770 477 aa19.04■□□□□ 0.64
TRIM54-203ENST00000485306 PFKMP08237 780 aa19.04■□□□□ 0.64
TRIM54-203ENST00000485306 CDC27P30260 824 aa19.04■□□□□ 0.64
TRIM54-203ENST00000485306 ICAM3P32942 547 aa19.04■□□□□ 0.64
TRIM54-203ENST00000485306 SP2Q02086 613 aa19.04■□□□□ 0.64
TRIM54-203ENST00000485306 FUT2Q10981 343 aa19.04■□□□□ 0.64
TRIM54-203ENST00000485306 BFSP2Q13515 415 aa19.04■□□□□ 0.64
TRIM54-203ENST00000485306 NEDD9Q14511 834 aa19.04■□□□□ 0.64
TRIM54-203ENST00000485306 PTGISQ16647 500 aa19.04■□□□□ 0.64
TRIM54-203ENST00000485306 PCNX4Q63HM2 1172 aa19.04■□□□□ 0.64
TRIM54-203ENST00000485306 NLRX1Q86UT6 975 aa19.04■□□□□ 0.64
TRIM54-203ENST00000485306 SESTD1Q86VW0 696 aa19.04■□□□□ 0.64
TRIM54-203ENST00000485306 CCDC155Q8N6L0 562 aa19.04■□□□□ 0.64
TRIM54-203ENST00000485306 HERVK_113Q902F9 699 aa19.04■□□□□ 0.64
TRIM54-203ENST00000485306 KAT2BQ92831 832 aa19.04■□□□□ 0.64
TRIM54-203ENST00000485306 INPP4AQ96PE3 977 aaPredicted RBP19.04■□□□□ 0.64
TRIM54-203ENST00000485306 WNT8AQ9H1J5 351 aa19.04■□□□□ 0.64
TRIM54-203ENST00000485306 SEMA6BQ9H3T3 888 aa19.04■□□□□ 0.64
TRIM54-203ENST00000485306 RTEL1Q9NZ71 1219 aa19.04■□□□□ 0.64
TRIM54-203ENST00000485306 TMEM265A0A087WTH1 108 aa19.03■□□□□ 0.64
TRIM54-203ENST00000485306 SPATA31C2B4DYI2 1134 aa19.03■□□□□ 0.64
TRIM54-203ENST00000485306 PITPNM1O00562 1244 aa19.03■□□□□ 0.64
TRIM54-203ENST00000485306 FIBPO43427 364 aa19.03■□□□□ 0.64
TRIM54-203ENST00000485306 UBA1P22314 1058 aaKnown RBP19.03■□□□□ 0.64
TRIM54-203ENST00000485306 RFC2P35250 354 aa19.03■□□□□ 0.64
TRIM54-203ENST00000485306 PSEN2P49810 448 aa19.03■□□□□ 0.64
TRIM54-203ENST00000485306 METAP2P50579 478 aaKnown RBP eCLIP19.03■□□□□ 0.64
TRIM54-203ENST00000485306 AK2P54819 239 aa19.03■□□□□ 0.64
TRIM54-203ENST00000485306 MRPS9P82933 396 aaKnown RBP19.03■□□□□ 0.64
TRIM54-203ENST00000485306 TOB2Q14106 344 aaPredicted RBP19.03■□□□□ 0.64
TRIM54-203ENST00000485306 HSDL1Q3SXM5 330 aa19.03■□□□□ 0.64
TRIM54-203ENST00000485306 RASIP1Q5U651 963 aa19.03■□□□□ 0.64
TRIM54-203ENST00000485306 HEATR3Q7Z4Q2 680 aa19.03■□□□□ 0.64
TRIM54-203ENST00000485306 PPP1R13LQ8WUF5 828 aa19.03■□□□□ 0.64
TRIM54-203ENST00000485306 SNX21Q969T3 373 aa19.03■□□□□ 0.64
TRIM54-203ENST00000485306 SCLYQ96I15 445 aa19.03■□□□□ 0.64
TRIM54-203ENST00000485306 ALG1Q9BT22 464 aa19.03■□□□□ 0.64
TRIM54-203ENST00000485306 CCDC196A0A1B0GTZ2 297 aa19.02■□□□□ 0.64
TRIM54-203ENST00000485306 SPDYE3A6NKU9 549 aa19.02■□□□□ 0.64
TRIM54-203ENST00000485306 NOP56O00567 594 aaKnown RBP19.02■□□□□ 0.64
TRIM54-203ENST00000485306 SORBS3O60504 671 aa19.02■□□□□ 0.64
TRIM54-203ENST00000485306 HOXD8P13378 290 aaPredicted RBP19.02■□□□□ 0.64
TRIM54-203ENST00000485306 MFSD10Q14728 455 aa19.02■□□□□ 0.64
TRIM54-203ENST00000485306 KIAA0753Q2KHM9 967 aa19.02■□□□□ 0.64
TRIM54-203ENST00000485306 OTOP2Q7RTS6 562 aa19.02■□□□□ 0.64
TRIM54-203ENST00000485306 GIMAP8Q8ND71 665 aaPredicted RBP19.02■□□□□ 0.64
TRIM54-203ENST00000485306 GPKOWQ92917 476 aaPredicted RBP eCLIP19.02■□□□□ 0.64
TRIM54-203ENST00000485306 ZNF274Q96GC6 653 aaPredicted RBP19.02■□□□□ 0.64
TRIM54-203ENST00000485306 ZSCAN31Q96LW9 406 aaPredicted RBP19.02■□□□□ 0.64
TRIM54-203ENST00000485306 EHMT1Q9H9B1 1298 aa19.02■□□□□ 0.64
TRIM54-203ENST00000485306 LIMCH1Q9UPQ0 1083 aa19.02■□□□□ 0.64
TRIM54-203ENST00000485306 NID2Q14112 1375 aa19.02■□□□□ 0.64
TRIM54-203ENST00000485306 F2P00734 622 aa19.01■□□□□ 0.63
TRIM54-203ENST00000485306 ZNF286BP0CG31 522 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms