RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 OSBP2Q969R2 916 aa5.22□□□□□ -1.57
VPS50-216ENST00000484954 TMEM169Q96HH4 297 aa5.22□□□□□ -1.57
VPS50-216ENST00000484954 GORASP1Q9BQQ3 440 aa5.22□□□□□ -1.57
VPS50-216ENST00000484954 SPATA25Q9BR10 227 aa5.22□□□□□ -1.57
VPS50-216ENST00000484954 AP5M1Q9H0R1 490 aa5.22□□□□□ -1.57
VPS50-216ENST00000484954 AGRPO00253 132 aa5.21□□□□□ -1.58
VPS50-216ENST00000484954 PRODHO43272 600 aa5.21□□□□□ -1.58
VPS50-216ENST00000484954 MYO1BO43795 1136 aa5.21□□□□□ -1.58
VPS50-216ENST00000484954 STK10O94804 968 aaKnown RBP5.21□□□□□ -1.58
VPS50-216ENST00000484954 SLC6A11P48066 632 aa5.21□□□□□ -1.58
VPS50-216ENST00000484954 MAP4K2Q12851 820 aa5.21□□□□□ -1.58
VPS50-216ENST00000484954 LSAMPQ13449 338 aa5.21□□□□□ -1.58
VPS50-216ENST00000484954 MROH9Q5TGP6 573 aa5.21□□□□□ -1.58
VPS50-216ENST00000484954 KCNT2Q6UVM3 1135 aa5.21□□□□□ -1.58
VPS50-216ENST00000484954 USP53Q70EK8 1073 aa5.21□□□□□ -1.58
VPS50-216ENST00000484954 MIB1Q86YT6 1006 aa5.21□□□□□ -1.58
VPS50-216ENST00000484954 KCTD13Q8WZ19 329 aa5.21□□□□□ -1.58
VPS50-216ENST00000484954 SEC14L1Q92503 715 aa5.21□□□□□ -1.58
VPS50-216ENST00000484954 ZBTB8AQ96BR9 441 aa5.21□□□□□ -1.58
VPS50-216ENST00000484954 CHAMP1Q96JM3 812 aa5.21□□□□□ -1.58
VPS50-216ENST00000484954 CLDND1Q9NY35 253 aa5.21□□□□□ -1.58
VPS50-216ENST00000484954 SH3D21A4FU49 640 aa5.2□□□□□ -1.58
VPS50-216ENST00000484954 CCDC85CA6NKD9 419 aa5.2□□□□□ -1.58
VPS50-216ENST00000484954 MAGEA10P43363 369 aaPredicted RBP5.2□□□□□ -1.58
VPS50-216ENST00000484954 ADAM17P78536 824 aa5.2□□□□□ -1.58
VPS50-216ENST00000484954 CAP1Q01518 475 aa5.2□□□□□ -1.58
VPS50-216ENST00000484954 HSP90AA2PQ14568 343 aaPredicted RBP5.2□□□□□ -1.58
VPS50-216ENST00000484954 CD300LDQ6UXZ3 194 aa5.2□□□□□ -1.58
VPS50-216ENST00000484954 ETV3LQ6ZN32 361 aa5.2□□□□□ -1.58
VPS50-216ENST00000484954 NLGN1Q8N2Q7 840 aa5.2□□□□□ -1.58
VPS50-216ENST00000484954 ARRDC4Q8NCT1 418 aa5.2□□□□□ -1.58
VPS50-216ENST00000484954 SGSM3Q96HU1 749 aa5.2□□□□□ -1.58
VPS50-216ENST00000484954 AARSD1Q9BTE6 412 aaKnown RBP5.2□□□□□ -1.58
VPS50-216ENST00000484954 PHF20Q9BVI0 1012 aa5.2□□□□□ -1.58
VPS50-216ENST00000484954 JAM3Q9BX67 310 aa5.2□□□□□ -1.58
VPS50-216ENST00000484954 TRIM55Q9BYV6 548 aa5.2□□□□□ -1.58
VPS50-216ENST00000484954 TANGO6Q9C0B7 1094 aa5.2□□□□□ -1.58
VPS50-216ENST00000484954 USP40Q9NVE5 1235 aa5.2□□□□□ -1.58
VPS50-216ENST00000484954 CNOT11Q9UKZ1 510 aaKnown RBP5.2□□□□□ -1.58
VPS50-216ENST00000484954 MSRB2Q9Y3D2 182 aa5.2□□□□□ -1.58
VPS50-216ENST00000484954 H7BY64 318 aa5.19□□□□□ -1.58
VPS50-216ENST00000484954 ADCY3O60266 1144 aa5.19□□□□□ -1.58
VPS50-216ENST00000484954 CYP2C8P10632 490 aa5.19□□□□□ -1.58
VPS50-216ENST00000484954 FGFR1P11362 822 aa5.19□□□□□ -1.58
VPS50-216ENST00000484954 PABPC1P11940 636 aaKnown RBP5.19□□□□□ -1.58
VPS50-216ENST00000484954 GTF2A2P52657 109 aa5.19□□□□□ -1.58
VPS50-216ENST00000484954 HMGA2P52926 109 aa5.19□□□□□ -1.58
VPS50-216ENST00000484954 CR1LQ2VPA4 569 aa5.19□□□□□ -1.58
VPS50-216ENST00000484954 ZFYVE27Q5T4F4 411 aa5.19□□□□□ -1.58
VPS50-216ENST00000484954 FOXB2Q5VYV0 432 aa5.19□□□□□ -1.58
VPS50-216ENST00000484954 FAM126BQ8IXS8 530 aa5.19□□□□□ -1.58
VPS50-216ENST00000484954 ST13P5Q8NFI4 369 aaPredicted RBP5.19□□□□□ -1.58
VPS50-216ENST00000484954 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.19□□□□□ -1.58
VPS50-216ENST00000484954 C11orf84Q9BUA3 381 aaPredicted RBP5.19□□□□□ -1.58
VPS50-216ENST00000484954 SCAND2PQ9GZW5 306 aaPredicted RBP5.19□□□□□ -1.58
VPS50-216ENST00000484954 PFDN2Q9UHV9 154 aa5.19□□□□□ -1.58
VPS50-216ENST00000484954 WASF3Q9UPY6 502 aa5.19□□□□□ -1.58
VPS50-216ENST00000484954 COA3Q9Y2R0 106 aaPredicted RBP5.19□□□□□ -1.58
VPS50-216ENST00000484954 ASXL2Q76L83 1435 aa5.19□□□□□ -1.58
VPS50-216ENST00000484954 TCRBV5S2A0A599 114 aa5.18□□□□□ -1.58
VPS50-216ENST00000484954 DIAPH1O60610 1272 aaKnown RBP5.18□□□□□ -1.58
VPS50-216ENST00000484954 TADA3O75528 432 aa5.18□□□□□ -1.58
VPS50-216ENST00000484954 ITGA1P56199 1179 aa5.18□□□□□ -1.58
VPS50-216ENST00000484954 NT5DC1Q5TFE4 455 aa5.18□□□□□ -1.58
VPS50-216ENST00000484954 STEAP3Q658P3 488 aa5.18□□□□□ -1.58
VPS50-216ENST00000484954 NSMFQ6X4W1 530 aa5.18□□□□□ -1.58
VPS50-216ENST00000484954 RBM12BQ8IXT5 1001 aaKnown RBP5.18□□□□□ -1.58
VPS50-216ENST00000484954 CKAP2LQ8IYA6 745 aa5.18□□□□□ -1.58
VPS50-216ENST00000484954 CARFQ8N187 725 aa5.18□□□□□ -1.58
VPS50-216ENST00000484954 LINC00482Q8N8I6 264 aa5.18□□□□□ -1.58
VPS50-216ENST00000484954 SORCS2Q96PQ0 1159 aa5.18□□□□□ -1.58
VPS50-216ENST00000484954 GPR27Q9NS67 375 aa5.18□□□□□ -1.58
VPS50-216ENST00000484954 RBPJLQ9UBG7 517 aa5.18□□□□□ -1.58
VPS50-216ENST00000484954 ZNF652Q9Y2D9 606 aa5.18□□□□□ -1.58
VPS50-216ENST00000484954 HGSO14964 777 aaPredicted RBP5.17□□□□□ -1.58
VPS50-216ENST00000484954 PDPK1O15530 556 aa5.17□□□□□ -1.58
VPS50-216ENST00000484954 ATP2B1P20020 1258 aa5.17□□□□□ -1.58
VPS50-216ENST00000484954 GTF2F1P35269 517 aaKnown RBP eCLIP5.17□□□□□ -1.58
VPS50-216ENST00000484954 THBS2P35442 1172 aa5.17□□□□□ -1.58
VPS50-216ENST00000484954 EMC4Q5J8M3 183 aa5.17□□□□□ -1.58
VPS50-216ENST00000484954 PIP4K2CQ8TBX8 421 aa5.17□□□□□ -1.58
VPS50-216ENST00000484954 DDX1Q92499 740 aaKnown RBP5.17□□□□□ -1.58
VPS50-216ENST00000484954 MENTQ9BUN1 341 aa5.17□□□□□ -1.58
VPS50-216ENST00000484954 SPATA9Q9BWV2 254 aa5.17□□□□□ -1.58
VPS50-216ENST00000484954 EPB41L1Q9H4G0 881 aa5.17□□□□□ -1.58
VPS50-216ENST00000484954 SMPD4Q9NXE4 827 aa5.17□□□□□ -1.58
VPS50-216ENST00000484954 PCDHB4Q9Y5E5 795 aa5.17□□□□□ -1.58
VPS50-216ENST00000484954 DUSP10Q9Y6W6 482 aa5.17□□□□□ -1.58
VPS50-216ENST00000484954 TRAV20A0A0B4J274 112 aa5.16□□□□□ -1.58
VPS50-216ENST00000484954 IQCA1LA6NCM1 817 aa5.16□□□□□ -1.58
VPS50-216ENST00000484954 NOBOXO60393 691 aa5.16□□□□□ -1.58
VPS50-216ENST00000484954 COL6A2P12110 1019 aa5.16□□□□□ -1.58
VPS50-216ENST00000484954 ADAM9Q13443 819 aa5.16□□□□□ -1.58
VPS50-216ENST00000484954 LBX2Q6XYB7 198 aa5.16□□□□□ -1.58
VPS50-216ENST00000484954 ZNF761Q86XN6 746 aaPredicted RBP5.16□□□□□ -1.58
VPS50-216ENST00000484954 C8orf37Q96NL8 207 aa5.16□□□□□ -1.58
VPS50-216ENST00000484954 TRAF6Q9Y4K3 522 aa5.16□□□□□ -1.58
VPS50-216ENST00000484954 FAM221BA6H8Z2 402 aa5.15□□□□□ -1.59
VPS50-216ENST00000484954 SLC27A2O14975 620 aa5.15□□□□□ -1.59
VPS50-216ENST00000484954 DGKIO75912 1065 aa5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms