RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 AMIGO3Q86WK7 504 aa8.84□□□□□ -0.99
USP40-213ENST00000483216 HOMER1Q86YM7 354 aa8.84□□□□□ -0.99
USP40-213ENST00000483216 PCDH19Q8TAB3 1148 aa8.84□□□□□ -0.99
USP40-213ENST00000483216 PHOSPHO1Q8TCT1 267 aa8.84□□□□□ -0.99
USP40-213ENST00000483216 CPA5Q8WXQ8 436 aa8.84□□□□□ -0.99
USP40-213ENST00000483216 SIGLEC10Q96LC7 697 aa8.84□□□□□ -0.99
USP40-213ENST00000483216 BCAS3Q9H6U6 928 aa8.84□□□□□ -0.99
USP40-213ENST00000483216 PCDHA9Q9Y5H5 950 aa8.84□□□□□ -0.99
USP40-213ENST00000483216 MRPL42Q9Y6G3 142 aaKnown RBP8.84□□□□□ -0.99
USP40-213ENST00000483216 IGFBP6P24592 240 aaPredicted RBP8.83□□□□□ -1
USP40-213ENST00000483216 SPIRE1Q08AE8 756 aa8.83□□□□□ -1
USP40-213ENST00000483216 ANKLE2Q86XL3 938 aa8.83□□□□□ -1
USP40-213ENST00000483216 MIB1Q86YT6 1006 aa8.83□□□□□ -1
USP40-213ENST00000483216 PIP4K2CQ8TBX8 421 aa8.83□□□□□ -1
USP40-213ENST00000483216 MAGEB10Q96LZ2 347 aaPredicted RBP8.83□□□□□ -1
USP40-213ENST00000483216 KCNJ15Q99712 375 aa8.83□□□□□ -1
USP40-213ENST00000483216 SMOC1Q9H4F8 434 aa8.83□□□□□ -1
USP40-213ENST00000483216 IRAK3Q9Y616 596 aa8.83□□□□□ -1
USP40-213ENST00000483216 BUB1BO60566 1050 aaPredicted RBP8.82□□□□□ -1
USP40-213ENST00000483216 IGSF3O75054 1194 aa8.82□□□□□ -1
USP40-213ENST00000483216 APPP05067 770 aa8.82□□□□□ -1
USP40-213ENST00000483216 GNAT1P11488 350 aa8.82□□□□□ -1
USP40-213ENST00000483216 KCNA10Q16322 511 aa8.82□□□□□ -1
USP40-213ENST00000483216 APPBP2Q92624 585 aa8.82□□□□□ -1
USP40-213ENST00000483216 SCLYQ96I15 445 aa8.82□□□□□ -1
USP40-213ENST00000483216 GOLGA2P5Q9HBQ8 144 aa8.82□□□□□ -1
USP40-213ENST00000483216 TRIM39Q9HCM9 518 aa8.82□□□□□ -1
USP40-213ENST00000483216 PCDHB4Q9Y5E5 795 aa8.82□□□□□ -1
USP40-213ENST00000483216 TCRBV5S2A0A599 114 aa8.81□□□□□ -1
USP40-213ENST00000483216 PPP1R12AO14974 1030 aaPredicted RBP8.81□□□□□ -1
USP40-213ENST00000483216 RAPGEF3O95398 923 aa8.81□□□□□ -1
USP40-213ENST00000483216 ASMTLO95671 621 aa8.81□□□□□ -1
USP40-213ENST00000483216 ATF2P15336 505 aa8.81□□□□□ -1
USP40-213ENST00000483216 TCEA2Q15560 299 aa8.81□□□□□ -1
USP40-213ENST00000483216 BRAPQ7Z569 592 aa8.81□□□□□ -1
USP40-213ENST00000483216 CILP2Q8IUL8 1156 aa8.81□□□□□ -1
USP40-213ENST00000483216 TMEFF1Q8IYR6 380 aa8.81□□□□□ -1
USP40-213ENST00000483216 UHMK1Q8TAS1 419 aaKnown RBP8.81□□□□□ -1
USP40-213ENST00000483216 FBXW5Q969U6 566 aa8.81□□□□□ -1
USP40-213ENST00000483216 CLUHP3Q96NS8 147 aa8.81□□□□□ -1
USP40-213ENST00000483216 MYOTQ9UBF9 498 aa8.81□□□□□ -1
USP40-213ENST00000483216 CNOT6Q9ULM6 557 aaKnown RBP8.81□□□□□ -1
USP40-213ENST00000483216 TBX22Q9Y458 520 aa8.81□□□□□ -1
USP40-213ENST00000483216 NISCHQ9Y2I1 1504 aa8.8□□□□□ -1
USP40-213ENST00000483216 DBX1A6NMT0 343 aa8.8□□□□□ -1
USP40-213ENST00000483216 GSTA4O15217 222 aa8.8□□□□□ -1
USP40-213ENST00000483216 RFPL3O75679 317 aa8.8□□□□□ -1
USP40-213ENST00000483216 RASGRP1O95267 797 aa8.8□□□□□ -1
USP40-213ENST00000483216 COL6A2P12110 1019 aa8.8□□□□□ -1
USP40-213ENST00000483216 LINC00310P59036 64 aa8.8□□□□□ -1
USP40-213ENST00000483216 CACNB2Q08289 660 aaPredicted RBP8.8□□□□□ -1
USP40-213ENST00000483216 SSPNQ14714 243 aa8.8□□□□□ -1
USP40-213ENST00000483216 ETV3LQ6ZN32 361 aa8.8□□□□□ -1
USP40-213ENST00000483216 C16orf86Q6ZW13 317 aa8.8□□□□□ -1
USP40-213ENST00000483216 C16orf59Q7L2K0 433 aa8.8□□□□□ -1
USP40-213ENST00000483216 ZC3H7AQ8IWR0 971 aaKnown RBP8.8□□□□□ -1
USP40-213ENST00000483216 FAM126BQ8IXS8 530 aa8.8□□□□□ -1
USP40-213ENST00000483216 FANCLQ9NW38 375 aa8.8□□□□□ -1
USP40-213ENST00000483216 ASH2LQ9UBL3 628 aa8.8□□□□□ -1
USP40-213ENST00000483216 KCTD3Q9Y597 815 aa8.8□□□□□ -1
USP40-213ENST00000483216 NUB1Q9Y5A7 615 aa8.8□□□□□ -1
USP40-213ENST00000483216 TLDC2A0PJX2 215 aa8.79□□□□□ -1
USP40-213ENST00000483216 NPIPB6E9PJ23 425 aa8.79□□□□□ -1
USP40-213ENST00000483216 FAM47CQ5HY64 1035 aa8.79□□□□□ -1
USP40-213ENST00000483216 FGD2Q7Z6J4 655 aa8.79□□□□□ -1
USP40-213ENST00000483216 B3GNT8Q7Z7M8 397 aa8.79□□□□□ -1
USP40-213ENST00000483216 TRIM48Q8IWZ4 208 aa8.79□□□□□ -1
USP40-213ENST00000483216 PDGFDQ9GZP0 370 aaPredicted RBP8.79□□□□□ -1
USP40-213ENST00000483216 TCRBV16S1A1N1A0A5B0 115 aa8.78□□□□□ -1
USP40-213ENST00000483216 ENPP3O14638 875 aa8.78□□□□□ -1
USP40-213ENST00000483216 NKRFO15226 690 aaKnown RBP eCLIP8.78□□□□□ -1
USP40-213ENST00000483216 CDC45O75419 566 aa8.78□□□□□ -1
USP40-213ENST00000483216 SRGAP2CP0DJJ0 459 aa8.78□□□□□ -1
USP40-213ENST00000483216 YBX3P16989 372 aaKnown RBP eCLIP8.78□□□□□ -1
USP40-213ENST00000483216 MC3RP41968 323 aa8.78□□□□□ -1
USP40-213ENST00000483216 FOXO4P98177 505 aa8.78□□□□□ -1
USP40-213ENST00000483216 ZNF385BQ569K4 471 aa8.78□□□□□ -1
USP40-213ENST00000483216 GIMAP6Q6P9H5 292 aa8.78□□□□□ -1
USP40-213ENST00000483216 FAM129CQ86XR2 697 aa8.78□□□□□ -1
USP40-213ENST00000483216 ARRDC4Q8NCT1 418 aa8.78□□□□□ -1
USP40-213ENST00000483216 PANK1Q8TE04 598 aa8.78□□□□□ -1
USP40-213ENST00000483216 EPB41L4AQ9HCS5 686 aaPredicted RBP8.78□□□□□ -1
USP40-213ENST00000483216 NGRNQ9NPE2 291 aaKnown RBP8.78□□□□□ -1
USP40-213ENST00000483216 DSEQ9UL01 958 aa8.78□□□□□ -1
USP40-213ENST00000483216 FAN1Q9Y2M0 1017 aa8.78□□□□□ -1
USP40-213ENST00000483216 RFXAPO00287 272 aa8.77□□□□□ -1.01
USP40-213ENST00000483216 SLC27A2O14975 620 aa8.77□□□□□ -1.01
USP40-213ENST00000483216 CKMP06732 381 aa8.77□□□□□ -1.01
USP40-213ENST00000483216 PYGMP11217 842 aa8.77□□□□□ -1.01
USP40-213ENST00000483216 PI3P19957 117 aa8.77□□□□□ -1.01
USP40-213ENST00000483216 ST5P78524 1137 aa8.77□□□□□ -1.01
USP40-213ENST00000483216 GPR19Q15760 415 aa8.77□□□□□ -1.01
USP40-213ENST00000483216 TTLL11Q8NHH1 800 aa8.77□□□□□ -1.01
USP40-213ENST00000483216 TOX2Q96NM4 488 aa8.77□□□□□ -1.01
USP40-213ENST00000483216 CATSPERZQ9NTU4 200 aa8.77□□□□□ -1.01
USP40-213ENST00000483216 CCDC66A2RUB6 948 aa8.76□□□□□ -1.01
USP40-213ENST00000483216 NPTXRO95502 500 aa8.76□□□□□ -1.01
USP40-213ENST00000483216 KCNA6P17658 529 aa8.76□□□□□ -1.01
USP40-213ENST00000483216 EPHA5P54756 1037 aa8.76□□□□□ -1.01
USP40-213ENST00000483216 PABPC4Q13310 644 aaKnown RBP eCLIP8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms