RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 ERCC6LQ2NKX8 1250 aa16.13■□□□□ 0.17
CHD3-211ENST00000481999 NCAPH2Q6IBW4 605 aa16.13■□□□□ 0.17
CHD3-211ENST00000481999 C7orf25Q9BPX7 421 aa16.13■□□□□ 0.17
CHD3-211ENST00000481999 PRDM4Q9UKN5 801 aa16.13■□□□□ 0.17
CHD3-211ENST00000481999 RNF225M0QZC1 329 aaPredicted RBP16.12■□□□□ 0.17
CHD3-211ENST00000481999 NFIBO00712 420 aa16.12■□□□□ 0.17
CHD3-211ENST00000481999 MSH4O15457 936 aa16.12■□□□□ 0.17
CHD3-211ENST00000481999 SREBF1P36956 1147 aa16.12■□□□□ 0.17
CHD3-211ENST00000481999 MAP3K10Q02779 954 aa16.12■□□□□ 0.17
CHD3-211ENST00000481999 PDIA5Q14554 519 aa16.12■□□□□ 0.17
CHD3-211ENST00000481999 KCNB1Q14721 858 aa16.12■□□□□ 0.17
CHD3-211ENST00000481999 LDHDQ86WU2 507 aa16.12■□□□□ 0.17
CHD3-211ENST00000481999 WDR18Q9BV38 432 aa16.12■□□□□ 0.17
CHD3-211ENST00000481999 RANBP17Q9H2T7 1088 aaKnown RBP16.12■□□□□ 0.17
CHD3-211ENST00000481999 KCNJ18B7U540 433 aa16.12■□□□□ 0.17
CHD3-211ENST00000481999 H2AFXP16104 143 aaPredicted RBP16.12■□□□□ 0.17
CHD3-211ENST00000481999 USP11P51784 963 aa16.12■□□□□ 0.17
CHD3-211ENST00000481999 AP3B2Q13367 1082 aa16.12■□□□□ 0.17
CHD3-211ENST00000481999 ORC2Q13416 577 aaPredicted RBP16.12■□□□□ 0.17
CHD3-211ENST00000481999 KCNJ12Q14500 433 aa16.12■□□□□ 0.17
CHD3-211ENST00000481999 TMEM119Q4V9L6 283 aa16.12■□□□□ 0.17
CHD3-211ENST00000481999 ANKRD40Q6AI12 368 aa16.12■□□□□ 0.17
CHD3-211ENST00000481999 ARHGAP27Q6ZUM4 889 aa16.12■□□□□ 0.17
CHD3-211ENST00000481999 TRIM47Q96LD4 638 aa16.12■□□□□ 0.17
CHD3-211ENST00000481999 PURBQ96QR8 312 aaKnown RBP16.12■□□□□ 0.17
CHD3-211ENST00000481999 ZNF536O15090 1300 aa16.12■□□□□ 0.17
CHD3-211ENST00000481999 CHMP2AO43633 222 aa16.11■□□□□ 0.17
CHD3-211ENST00000481999 GCFC2P16383 781 aaKnown RBP16.11■□□□□ 0.17
CHD3-211ENST00000481999 HIRAP54198 1017 aaPredicted RBP16.11■□□□□ 0.17
CHD3-211ENST00000481999 MTF1Q14872 753 aa16.11■□□□□ 0.17
CHD3-211ENST00000481999 TCP11X2Q5H9J9 407 aa16.11■□□□□ 0.17
CHD3-211ENST00000481999 KRT222Q8N1A0 295 aa16.11■□□□□ 0.17
CHD3-211ENST00000481999 MNS1Q8NEH6 495 aa16.11■□□□□ 0.17
CHD3-211ENST00000481999 CTAGE1Q96RT6 745 aa16.11■□□□□ 0.17
CHD3-211ENST00000481999 DUSP9Q99956 384 aaKnown RBP16.11■□□□□ 0.17
CHD3-211ENST00000481999 RAB34Q9BZG1 259 aa16.11■□□□□ 0.17
CHD3-211ENST00000481999 TANGO6Q9C0B7 1094 aa16.11■□□□□ 0.17
CHD3-211ENST00000481999 COL20A1Q9P218 1284 aa16.11■□□□□ 0.17
CHD3-211ENST00000481999 EML1O00423 815 aa16.11■□□□□ 0.17
CHD3-211ENST00000481999 PES1O00541 588 aaKnown RBP16.11■□□□□ 0.17
CHD3-211ENST00000481999 URI1O94763 535 aaPredicted RBP16.11■□□□□ 0.17
CHD3-211ENST00000481999 RBL2Q08999 1139 aa16.11■□□□□ 0.17
CHD3-211ENST00000481999 SPP2Q13103 211 aa16.11■□□□□ 0.17
CHD3-211ENST00000481999 TTI2Q6NXR4 508 aa16.11■□□□□ 0.17
CHD3-211ENST00000481999 CATSPER3Q86XQ3 398 aa16.11■□□□□ 0.17
CHD3-211ENST00000481999 PANX2Q96RD6 677 aa16.11■□□□□ 0.17
CHD3-211ENST00000481999 RGL1Q9NZL6 768 aa16.11■□□□□ 0.17
CHD3-211ENST00000481999 PKD2L1Q9P0L9 805 aa16.11■□□□□ 0.17
CHD3-211ENST00000481999 POLR2AP24928 1970 aaKnown RBP16.1■□□□□ 0.17
CHD3-211ENST00000481999 CYP3A7-CYP3A51PA0A087WV96 503 aa16.1■□□□□ 0.17
CHD3-211ENST00000481999 AKR1B15C9JRZ8 316 aaPredicted RBP16.1■□□□□ 0.17
CHD3-211ENST00000481999 N4BP3O15049 544 aa16.1■□□□□ 0.17
CHD3-211ENST00000481999 ZBTB39O15060 712 aa16.1■□□□□ 0.17
CHD3-211ENST00000481999 CYP3A7P24462 503 aa16.1■□□□□ 0.17
CHD3-211ENST00000481999 ZNF76P36508 570 aa16.1■□□□□ 0.17
CHD3-211ENST00000481999 MMP14P50281 582 aa16.1■□□□□ 0.17
CHD3-211ENST00000481999 GPR162Q16538 588 aa16.1■□□□□ 0.17
CHD3-211ENST00000481999 LRRN4CLQ8ND94 238 aa16.1■□□□□ 0.17
CHD3-211ENST00000481999 UBXN4Q92575 508 aa16.1■□□□□ 0.17
CHD3-211ENST00000481999 SEMA6BQ9H3T3 888 aa16.1■□□□□ 0.17
CHD3-211ENST00000481999 CUEDC2Q9H467 287 aa16.1■□□□□ 0.17
CHD3-211ENST00000481999 RAVER2Q9HCJ3 691 aaKnown RBP16.1■□□□□ 0.17
CHD3-211ENST00000481999 GGA3Q9NZ52 723 aa16.1■□□□□ 0.17
CHD3-211ENST00000481999 IGLV3-22A0A075B6J6 115 aa16.1■□□□□ 0.17
CHD3-211ENST00000481999 RPS12P25398 132 aaKnown RBP16.1■□□□□ 0.17
CHD3-211ENST00000481999 GABPB1Q06547 395 aaPredicted RBP16.1■□□□□ 0.17
CHD3-211ENST00000481999 TNFAIP1Q13829 316 aa16.1■□□□□ 0.17
CHD3-211ENST00000481999 ARHGAP29Q52LW3 1261 aa16.1■□□□□ 0.17
CHD3-211ENST00000481999 TOGARAM2Q6ZUX3 1019 aa16.1■□□□□ 0.17
CHD3-211ENST00000481999 CHURC1Q8WUH1 139 aa16.1■□□□□ 0.17
CHD3-211ENST00000481999 PKNOX2Q96KN3 472 aa16.1■□□□□ 0.17
CHD3-211ENST00000481999 MBOAT7Q96N66 472 aa16.1■□□□□ 0.17
CHD3-211ENST00000481999 WRNIP1Q96S55 665 aa16.1■□□□□ 0.17
CHD3-211ENST00000481999 CCPG1Q9ULG6 757 aa16.1■□□□□ 0.17
CHD3-211ENST00000481999 ABCB11O95342 1321 aa16.1■□□□□ 0.17
CHD3-211ENST00000481999 FANCGO15287 622 aa16.09■□□□□ 0.17
CHD3-211ENST00000481999 VCAM1P19320 739 aa16.09■□□□□ 0.17
CHD3-211ENST00000481999 CASQ1P31415 396 aa16.09■□□□□ 0.17
CHD3-211ENST00000481999 FXR1P51114 621 aaKnown RBP eCLIP16.09■□□□□ 0.17
CHD3-211ENST00000481999 GNG11P61952 73 aa16.09■□□□□ 0.17
CHD3-211ENST00000481999 PPFIBP1Q86W92 1011 aa16.09■□□□□ 0.17
CHD3-211ENST00000481999 IL31RAQ8NI17 732 aa16.09■□□□□ 0.17
CHD3-211ENST00000481999 DNAJC19Q96DA6 116 aa16.09■□□□□ 0.17
CHD3-211ENST00000481999 HOOK2Q96ED9 719 aa16.09■□□□□ 0.17
CHD3-211ENST00000481999 EMILIN3Q9NT22 766 aa16.09■□□□□ 0.17
CHD3-211ENST00000481999 FAM53CQ9NYF3 392 aa16.09■□□□□ 0.17
CHD3-211ENST00000481999 A0A0U1RQJ8 604 aa16.09■□□□□ 0.17
CHD3-211ENST00000481999 PSMA7O14818 248 aa16.09■□□□□ 0.17
CHD3-211ENST00000481999 FLOT1O75955 427 aa16.09■□□□□ 0.17
CHD3-211ENST00000481999 TPM1P09493 284 aa16.09■□□□□ 0.17
CHD3-211ENST00000481999 SPATA31C1P0DKV0 1188 aa16.09■□□□□ 0.17
CHD3-211ENST00000481999 CASP14P31944 242 aa16.09■□□□□ 0.17
CHD3-211ENST00000481999 PBX1P40424 430 aa16.09■□□□□ 0.17
CHD3-211ENST00000481999 COPB1P53618 953 aaKnown RBP16.09■□□□□ 0.17
CHD3-211ENST00000481999 PABPC4Q13310 644 aaKnown RBP eCLIP16.09■□□□□ 0.171e-6■■□□□ 13.3
CHD3-211ENST00000481999 FILIP1LQ4L180 1135 aa16.09■□□□□ 0.17
CHD3-211ENST00000481999 MUM1L1Q5H9M0 696 aa16.09■□□□□ 0.17
CHD3-211ENST00000481999 CSGALNACT2Q8N6G5 542 aa16.09■□□□□ 0.17
CHD3-211ENST00000481999 ATRIPQ8WXE1 791 aa16.09■□□□□ 0.17
CHD3-211ENST00000481999 DESI2Q9BSY9 194 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms