RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 VWA3AA6NCI4 1184 aa11.47□□□□□ -0.57
USP39-215ENST00000481409 EIF2AK2P19525 551 aaKnown RBP11.47□□□□□ -0.57
USP39-215ENST00000481409 ICAM3P32942 547 aa11.47□□□□□ -0.57
USP39-215ENST00000481409 MRPS9P82933 396 aaKnown RBP11.47□□□□□ -0.57
USP39-215ENST00000481409 CRHR2Q13324 411 aa11.47□□□□□ -0.57
USP39-215ENST00000481409 MTMR1Q13613 665 aa11.47□□□□□ -0.57
USP39-215ENST00000481409 ZNF792Q3KQV3 632 aa11.47□□□□□ -0.57
USP39-215ENST00000481409 WDR78Q5VTH9 848 aa11.47□□□□□ -0.57
USP39-215ENST00000481409 HAUS3Q68CZ6 603 aa11.47□□□□□ -0.57
USP39-215ENST00000481409 MAMDC4Q6UXC1 1216 aa11.47□□□□□ -0.57
USP39-215ENST00000481409 FSIP1Q8NA03 581 aa11.47□□□□□ -0.57
USP39-215ENST00000481409 RDM1Q8NG50 284 aa11.47□□□□□ -0.57
USP39-215ENST00000481409 ERMNQ8TAM6 284 aa11.47□□□□□ -0.57
USP39-215ENST00000481409 HAS1Q92839 578 aa11.47□□□□□ -0.57
USP39-215ENST00000481409 SLC5A5Q92911 643 aa11.47□□□□□ -0.57
USP39-215ENST00000481409 SENP7Q9BQF6 1050 aa11.47□□□□□ -0.57
USP39-215ENST00000481409 CSRNP2Q9H175 543 aa11.47□□□□□ -0.57
USP39-215ENST00000481409 PORCNQ9H237 461 aa11.47□□□□□ -0.57
USP39-215ENST00000481409 CUEDC2Q9H467 287 aa11.47□□□□□ -0.57
USP39-215ENST00000481409 TTC12Q9H892 705 aaPredicted RBP11.47□□□□□ -0.57
USP39-215ENST00000481409 EFCC1Q9HA90 598 aa11.47□□□□□ -0.57
USP39-215ENST00000481409 MAGEF1Q9HAY2 307 aa11.47□□□□□ -0.57
USP39-215ENST00000481409 CCDC39Q9UFE4 941 aa11.47□□□□□ -0.57
USP39-215ENST00000481409 TCEAL9Q9UHQ7 104 aa11.47□□□□□ -0.57
USP39-215ENST00000481409 HOOK1Q9UJC3 728 aaKnown RBP11.47□□□□□ -0.57
USP39-215ENST00000481409 NFASCO94856 1347 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 SYNGAP1Q96PV0 1343 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 KDM3AQ9Y4C1 1321 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 MSH4O15457 936 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 GADD45BO75293 160 aaPredicted RBP11.46□□□□□ -0.57
USP39-215ENST00000481409 GNRH1P01148 92 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 HOXC6P09630 235 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 ITGB5P18084 799 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 ADORA2AP29274 412 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 UBA7P41226 1012 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 TXKP42681 527 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 SYKP43405 635 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 FCGRTP55899 365 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 PDE4DQ08499 809 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 PPP2R5CQ13362 524 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 KIF22Q14807 665 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 ARHGEF6Q15052 776 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 MORN1Q5T089 497 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 KRT79Q5XKE5 535 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 SHC4Q6S5L8 630 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 TRMT44Q8IYL2 757 aaKnown RBP11.46□□□□□ -0.57
USP39-215ENST00000481409 ENGASEQ8NFI3 743 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 NEK9Q8TD19 979 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 GPT2Q8TD30 523 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 NUDT12Q9BQG2 462 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 ZNF577Q9BSK1 485 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 TEKT3Q9BXF9 490 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 NT5C3AQ9H0P0 336 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 KCNH7Q9NS40 1196 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 LRWD1Q9UFC0 647 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 CPA4Q9UI42 421 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 KCNH3Q9ULD8 1083 aa11.46□□□□□ -0.57
USP39-215ENST00000481409 LCTP09848 1927 aa11.46□□□□□ -0.58
USP39-215ENST00000481409 SOWAHBA6NEL2 793 aa11.45□□□□□ -0.58
USP39-215ENST00000481409 IPO5O00410 1097 aaKnown RBP11.45□□□□□ -0.58
USP39-215ENST00000481409 GAS7O60861 476 aa11.45□□□□□ -0.58
USP39-215ENST00000481409 KINO60870 393 aaKnown RBP11.45□□□□□ -0.58
USP39-215ENST00000481409 PSMD10O75832 226 aa11.45□□□□□ -0.58
USP39-215ENST00000481409 MYL1P05976 194 aa11.45□□□□□ -0.58
USP39-215ENST00000481409 MYCLP12524 364 aaPredicted RBP11.45□□□□□ -0.58
USP39-215ENST00000481409 PFKFB1P16118 471 aa11.45□□□□□ -0.58
USP39-215ENST00000481409 SFNP31947 248 aa11.45□□□□□ -0.58
USP39-215ENST00000481409 RGS2P41220 211 aa11.45□□□□□ -0.58
USP39-215ENST00000481409 TECP42680 631 aa11.45□□□□□ -0.58
USP39-215ENST00000481409 VEGFBP49765 207 aa11.45□□□□□ -0.58
USP39-215ENST00000481409 KRT76Q01546 638 aa11.45□□□□□ -0.58
USP39-215ENST00000481409 CNTN2Q02246 1040 aa11.45□□□□□ -0.58
USP39-215ENST00000481409 MAP2K5Q13163 448 aa11.45□□□□□ -0.58
USP39-215ENST00000481409 SEMA3FQ13275 785 aa11.45□□□□□ -0.58
USP39-215ENST00000481409 HYIQ5T013 277 aa11.45□□□□□ -0.58
USP39-215ENST00000481409 CCDC183Q5T5S1 534 aa11.45□□□□□ -0.58
USP39-215ENST00000481409 LRCH2Q5VUJ6 765 aa11.45□□□□□ -0.58
USP39-215ENST00000481409 DPP9Q86TI2 863 aa11.45□□□□□ -0.58
USP39-215ENST00000481409 FMR1NBQ8N0W7 255 aaPredicted RBP11.45□□□□□ -0.58
USP39-215ENST00000481409 IQUBQ8NA54 791 aa11.45□□□□□ -0.58
USP39-215ENST00000481409 SYMPKQ92797 1274 aaKnown RBP11.45□□□□□ -0.58
USP39-215ENST00000481409 CALML4Q96GE6 196 aa11.45□□□□□ -0.58
USP39-215ENST00000481409 CLIC6Q96NY7 704 aa11.45□□□□□ -0.58
USP39-215ENST00000481409 AGO4Q9HCK5 861 aaKnown RBP11.45□□□□□ -0.58
USP39-215ENST00000481409 VTA1Q9NP79 307 aa11.45□□□□□ -0.58
USP39-215ENST00000481409 PLXNA1Q9UIW2 1896 aa11.44□□□□□ -0.58
USP39-215ENST00000481409 SPATA31C2B4DYI2 1134 aa11.44□□□□□ -0.58
USP39-215ENST00000481409 AOC2O75106 756 aa11.44□□□□□ -0.58
USP39-215ENST00000481409 ZNF202O95125 648 aa11.44□□□□□ -0.58
USP39-215ENST00000481409 XRCC5P13010 732 aaKnown RBP11.44□□□□□ -0.58
USP39-215ENST00000481409 HOXD10P28358 340 aa11.44□□□□□ -0.58
USP39-215ENST00000481409 NDUFA8P51970 172 aa11.44□□□□□ -0.58
USP39-215ENST00000481409 MAP2K1Q02750 393 aaPredicted RBP11.44□□□□□ -0.58
USP39-215ENST00000481409 GRM1Q13255 1194 aa11.44□□□□□ -0.58
USP39-215ENST00000481409 SNW1Q13573 536 aaKnown RBP11.44□□□□□ -0.58
USP39-215ENST00000481409 NEDD9Q14511 834 aa11.44□□□□□ -0.58
USP39-215ENST00000481409 IL17AQ16552 155 aa11.44□□□□□ -0.58
USP39-215ENST00000481409 OLFML2BQ68BL8 750 aa11.44□□□□□ -0.58
USP39-215ENST00000481409 OTOP1Q7RTM1 612 aa11.44□□□□□ -0.58
USP39-215ENST00000481409 IL31RAQ8NI17 732 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms