RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 SNX1Q13596 522 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 ZNF579Q8NAF0 562 aaKnown RBP14.78□□□□□ -0.04
USP42-206ENST00000479544 DAAM1Q9Y4D1 1078 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 MYOM1P52179 1685 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 PGRMC1O00264 195 aaKnown RBP14.78□□□□□ -0.04
USP42-206ENST00000479544 TRIP13Q15645 432 aaPredicted RBP14.78□□□□□ -0.04
USP42-206ENST00000479544 HLFQ16534 295 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 NUGGCQ68CJ6 796 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 ZNF365Q70YC5 407 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 SPDL1Q96EA4 605 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 NAP1L3Q99457 506 aaPredicted RBP14.78□□□□□ -0.04
USP42-206ENST00000479544 AMACRQ9UHK6 382 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 PCDHA12Q9UN75 941 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 USP17L3A6NCW0 530 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 USP17L4A6NCW7 530 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 NBPF26B4DH59 902 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 SMIM24O75264 130 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 POTEJP0CG39 1038 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 C6orf163Q5TEZ5 329 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 NBPF10Q6P3W6 841 aaKnown RBP14.78□□□□□ -0.04
USP42-206ENST00000479544 CCDC174Q6PII3 467 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 USP17L1Q7RTZ2 530 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 LRRC47Q8N1G4 583 aaKnown RBP14.78□□□□□ -0.04
USP42-206ENST00000479544 RNF10Q8N5U6 811 aaKnown RBP14.78□□□□□ -0.04
USP42-206ENST00000479544 NBPF15Q8N660 670 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 MSANTD4Q8NCY6 345 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 PPFIBP2Q8ND30 876 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 TBCKQ8TEA7 893 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 LARP4BQ92615 738 aaKnown RBP14.78□□□□□ -0.04
USP42-206ENST00000479544 MCUR1Q96AQ8 359 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 HOMER3Q9NSC5 361 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 KIAA1024Q9UPX6 916 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 HMGB1P1B2RPK0 211 aaPredicted RBP14.78□□□□□ -0.04
USP42-206ENST00000479544 SEMA3EO15041 775 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 NR2F2P24468 414 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 TOB1P50616 345 aaPredicted RBP14.78□□□□□ -0.04
USP42-206ENST00000479544 ZNF211Q13398 564 aaPredicted RBP14.78□□□□□ -0.04
USP42-206ENST00000479544 MESDQ14696 234 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 MUM1Q2TAK8 710 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 ANKRD40Q6AI12 368 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 SETDB2Q96T68 719 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 THAP9Q9H5L6 903 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.78□□□□□ -0.04
USP42-206ENST00000479544 HPSEQ9Y251 543 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 ZBTB1Q9Y2K1 713 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 CCDC169A6NNP5 214 aa14.77□□□□□ -0.04
USP42-206ENST00000479544 DAPK3O43293 454 aa14.77□□□□□ -0.04
USP42-206ENST00000479544 FGGP02679 453 aa14.77□□□□□ -0.04
USP42-206ENST00000479544 MMEP08473 750 aa14.77□□□□□ -0.04
USP42-206ENST00000479544 RFX5P48382 616 aaPredicted RBP14.77□□□□□ -0.04
USP42-206ENST00000479544 CHRNDQ07001 517 aa14.77□□□□□ -0.04
USP42-206ENST00000479544 USP17L2Q6R6M4 530 aa14.77□□□□□ -0.04
USP42-206ENST00000479544 SPATS2LQ9NUQ6 558 aaKnown RBP14.77□□□□□ -0.04
USP42-206ENST00000479544 ANO9A1A5B4 782 aa14.77□□□□□ -0.05
USP42-206ENST00000479544 GFPT2O94808 682 aa14.77□□□□□ -0.05
USP42-206ENST00000479544 ACSL3O95573 720 aa14.77□□□□□ -0.05
USP42-206ENST00000479544 USP17L8P0C7I0 530 aa14.77□□□□□ -0.05
USP42-206ENST00000479544 KRT5P13647 590 aa14.77□□□□□ -0.05
USP42-206ENST00000479544 EXOC3L4Q17RC7 722 aa14.77□□□□□ -0.05
USP42-206ENST00000479544 ZNF449Q6P9G9 518 aa14.77□□□□□ -0.05
USP42-206ENST00000479544 FAM47EQ6ZV65 393 aa14.77□□□□□ -0.05
USP42-206ENST00000479544 DEFB132Q7Z7B7 95 aa14.77□□□□□ -0.05
USP42-206ENST00000479544 PHLDB2Q86SQ0 1253 aa14.77□□□□□ -0.05
USP42-206ENST00000479544 PARP9Q8IXQ6 854 aa14.77□□□□□ -0.05
USP42-206ENST00000479544 VPS52Q8N1B4 723 aa14.77□□□□□ -0.05
USP42-206ENST00000479544 ATP6V1G3Q96LB4 118 aa14.77□□□□□ -0.05
USP42-206ENST00000479544 FMO2Q99518 471 aa14.77□□□□□ -0.05
USP42-206ENST00000479544 FBXL5Q9UKA1 691 aa14.77□□□□□ -0.05
USP42-206ENST00000479544 TNS3Q68CZ2 1445 aa14.77□□□□□ -0.05
USP42-206ENST00000479544 GSG1L2A8MUP6 293 aa14.77□□□□□ -0.05
USP42-206ENST00000479544 PRPF3O43395 683 aaKnown RBP14.77□□□□□ -0.05
USP42-206ENST00000479544 IFNB1P01574 187 aa14.77□□□□□ -0.05
USP42-206ENST00000479544 MRPL12P52815 198 aaKnown RBP14.77□□□□□ -0.05
USP42-206ENST00000479544 ALKBH5Q6P6C2 394 aaKnown RBP14.77□□□□□ -0.05
USP42-206ENST00000479544 MYCT1Q8N699 235 aa14.77□□□□□ -0.05
USP42-206ENST00000479544 COA7Q96BR5 231 aa14.77□□□□□ -0.05
USP42-206ENST00000479544 CAPN6Q9Y6Q1 641 aa14.77□□□□□ -0.05
USP42-206ENST00000479544 COL16A1Q07092 1604 aaPredicted RBP14.77□□□□□ -0.05
USP42-206ENST00000479544 MEIS1O00470 390 aa14.76□□□□□ -0.05
USP42-206ENST00000479544 EXOC3O60645 756 aa14.76□□□□□ -0.05
USP42-206ENST00000479544 FKBP3Q00688 224 aaKnown RBP14.76□□□□□ -0.05
USP42-206ENST00000479544 DPYDQ12882 1025 aa14.76□□□□□ -0.05
USP42-206ENST00000479544 PABPC4Q13310 644 aaKnown RBP eCLIP14.76□□□□□ -0.05
USP42-206ENST00000479544 TXNRD1Q16881 649 aa14.76□□□□□ -0.05
USP42-206ENST00000479544 GNPTABQ3T906 1256 aa14.76□□□□□ -0.05
USP42-206ENST00000479544 USH1GQ495M9 461 aa14.76□□□□□ -0.05
USP42-206ENST00000479544 CYP4F22Q6NT55 531 aa14.76□□□□□ -0.05
USP42-206ENST00000479544 UBL4BQ8N7F7 174 aa14.76□□□□□ -0.05
USP42-206ENST00000479544 WHAMMQ8TF30 809 aa14.76□□□□□ -0.05
USP42-206ENST00000479544 MROH5Q6ZUA9 1318 aa14.76□□□□□ -0.05
USP42-206ENST00000479544 CDHR2Q9BYE9 1310 aa14.76□□□□□ -0.05
USP42-206ENST00000479544 POTEMA6NI47 508 aa14.76□□□□□ -0.05
USP42-206ENST00000479544 PPP1R3GB7ZBB8 358 aa14.76□□□□□ -0.05
USP42-206ENST00000479544 ELF1P32519 619 aa14.76□□□□□ -0.05
USP42-206ENST00000479544 ADCY7P51828 1080 aa14.76□□□□□ -0.05
USP42-206ENST00000479544 SP4Q02446 784 aa14.76□□□□□ -0.05
USP42-206ENST00000479544 STK4Q13043 487 aa14.76□□□□□ -0.05
USP42-206ENST00000479544 TAF11Q15544 211 aa14.76□□□□□ -0.05
USP42-206ENST00000479544 DNAAF5Q86Y56 855 aa14.76□□□□□ -0.05
USP42-206ENST00000479544 CAPN11Q9UMQ6 739 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms