RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 GPM6BQ13491 265 aa20.09■□□□□ 0.81
VIM-204ENST00000478746 CDC37Q16543 378 aaPredicted RBP20.09■□□□□ 0.81
VIM-204ENST00000478746 MFSD6Q6ZSS7 791 aa20.09■□□□□ 0.81
VIM-204ENST00000478746 PABPC5Q96DU9 382 aaKnown RBP20.09■□□□□ 0.81
VIM-204ENST00000478746 FBXL18Q96ME1 805 aa20.09■□□□□ 0.81
VIM-204ENST00000478746 MYH7BA7E2Y1 1941 aa20.09■□□□□ 0.81
VIM-204ENST00000478746 H3BNC9 293 aa20.08■□□□□ 0.81
VIM-204ENST00000478746 PPFIA4O75335 1185 aa20.08■□□□□ 0.81
VIM-204ENST00000478746 NR3C2P08235 984 aa20.08■□□□□ 0.81
VIM-204ENST00000478746 EIF2AK2P19525 551 aaKnown RBP20.08■□□□□ 0.81
VIM-204ENST00000478746 HAND2P61296 217 aa20.08■□□□□ 0.81
VIM-204ENST00000478746 TCEAL5Q5H9L2 206 aa20.08■□□□□ 0.81
VIM-204ENST00000478746 EVI5LQ96CN4 794 aa20.08■□□□□ 0.81
VIM-204ENST00000478746 PRKAG3Q9UGI9 489 aa20.08■□□□□ 0.81
VIM-204ENST00000478746 MICAL3Q7RTP6 2002 aa20.07■□□□□ 0.8
VIM-204ENST00000478746 HSPD1P10809 573 aaKnown RBP20.07■□□□□ 0.8
VIM-204ENST00000478746 MKRN4PQ13434 485 aaPredicted RBP20.07■□□□□ 0.8
VIM-204ENST00000478746 HIC1Q14526 733 aa20.07■□□□□ 0.8
VIM-204ENST00000478746 MCMDC2Q4G0Z9 681 aa20.07■□□□□ 0.8
VIM-204ENST00000478746 PLEKHG4Q58EX7 1191 aa20.07■□□□□ 0.8
VIM-204ENST00000478746 ADGRF4Q8IZF3 695 aa20.07■□□□□ 0.8
VIM-204ENST00000478746 YME1L1Q96TA2 773 aa20.07■□□□□ 0.8
VIM-204ENST00000478746 MRPL11Q9Y3B7 192 aaKnown RBP20.07■□□□□ 0.8
VIM-204ENST00000478746 UPP2O95045 317 aa20.06■□□□□ 0.8
VIM-204ENST00000478746 PCP11498 1178 aaKnown RBP20.06■□□□□ 0.8
VIM-204ENST00000478746 ZP2Q05996 745 aa20.06■□□□□ 0.8
VIM-204ENST00000478746 SERINC5Q86VE9 423 aa20.06■□□□□ 0.8
VIM-204ENST00000478746 DGKHQ86XP1 1220 aa20.06■□□□□ 0.8
VIM-204ENST00000478746 TMEM192Q8IY95 271 aa20.06■□□□□ 0.8
VIM-204ENST00000478746 TOP1MTQ969P6 601 aa20.06■□□□□ 0.8
VIM-204ENST00000478746 ZKSCAN3Q9BRR0 538 aa20.06■□□□□ 0.8
VIM-204ENST00000478746 UPF3BQ9BZI7 483 aaKnown RBP20.06■□□□□ 0.8
VIM-204ENST00000478746 NSUN3Q9H649 340 aaKnown RBP20.06■□□□□ 0.8
VIM-204ENST00000478746 PXMP2Q9NR77 195 aa20.06■□□□□ 0.8
VIM-204ENST00000478746 WDFY4Q6ZS81 3184 aa20.05■□□□□ 0.8
VIM-204ENST00000478746 C19orf67A6NJJ6 358 aa20.05■□□□□ 0.8
VIM-204ENST00000478746 HOXD8P13378 290 aaPredicted RBP20.05■□□□□ 0.8
VIM-204ENST00000478746 MYSM1Q5VVJ2 828 aa20.05■□□□□ 0.8
VIM-204ENST00000478746 FBXO11Q86XK2 927 aa20.05■□□□□ 0.8
VIM-204ENST00000478746 ADHFE1Q8IWW8 467 aa20.05■□□□□ 0.8
VIM-204ENST00000478746 SEPT8Q92599 483 aa20.05■□□□□ 0.8
VIM-204ENST00000478746 FAM227BQ96M60 508 aa20.05■□□□□ 0.8
VIM-204ENST00000478746 SPATA33Q96N06 139 aa20.05■□□□□ 0.8
VIM-204ENST00000478746 CLDND1Q9NY35 253 aa20.05■□□□□ 0.8
VIM-204ENST00000478746 NCK2O43639 380 aa20.04■□□□□ 0.8
VIM-204ENST00000478746 SORBS3O60504 671 aa20.04■□□□□ 0.8
VIM-204ENST00000478746 CFBP00751 764 aa20.04■□□□□ 0.8
VIM-204ENST00000478746 COL19A1Q14993 1142 aa20.04■□□□□ 0.8
VIM-204ENST00000478746 QRICH1Q2TAL8 776 aa20.04■□□□□ 0.8
VIM-204ENST00000478746 HSDL1Q3SXM5 330 aa20.04■□□□□ 0.8
VIM-204ENST00000478746 CELF3Q5SZQ8 465 aaKnown RBP20.04■□□□□ 0.8
VIM-204ENST00000478746 KCNV1Q6PIU1 500 aa20.04■□□□□ 0.8
VIM-204ENST00000478746 PNMA1Q8ND90 353 aa20.04■□□□□ 0.8
VIM-204ENST00000478746 ESR2Q92731 530 aa20.04■□□□□ 0.8
VIM-204ENST00000478746 ATP6V0A1Q93050 837 aa20.04■□□□□ 0.8
VIM-204ENST00000478746 RNF41Q9H4P4 317 aaPredicted RBP20.04■□□□□ 0.8
VIM-204ENST00000478746 VAT1LQ9HCJ6 419 aa20.04■□□□□ 0.8
VIM-204ENST00000478746 ZBTB47Q9UFB7 747 aaPredicted RBP20.04■□□□□ 0.8
VIM-204ENST00000478746 MYO7AQ13402 2215 aa20.04■□□□□ 0.8
VIM-204ENST00000478746 ZMYM6O95789 1325 aa20.03■□□□□ 0.8
VIM-204ENST00000478746 A0A0D9SFI3 127 aa20.03■□□□□ 0.8
VIM-204ENST00000478746 C17orf102A2RUQ5 167 aa20.03■□□□□ 0.8
VIM-204ENST00000478746 DHX16O60231 1041 aaKnown RBP20.03■□□□□ 0.8
VIM-204ENST00000478746 MYCLP12524 364 aaPredicted RBP20.03■□□□□ 0.8
VIM-204ENST00000478746 MFSD14AQ96MC6 490 aa20.03■□□□□ 0.8
VIM-204ENST00000478746 GGPS1O95749 300 aa20.02■□□□□ 0.8
VIM-204ENST00000478746 ASPRV1Q53RT3 343 aa20.02■□□□□ 0.8
VIM-204ENST00000478746 CCDC178Q5BJE1 867 aa20.02■□□□□ 0.8
VIM-204ENST00000478746 HFE2Q6ZVN8 426 aa20.02■□□□□ 0.8
VIM-204ENST00000478746 TBC1D10CQ8IV04 446 aa20.02■□□□□ 0.8
VIM-204ENST00000478746 C16orf70Q9BSU1 422 aa20.02■□□□□ 0.8
VIM-204ENST00000478746 KAT14Q9H8E8 782 aa20.02■□□□□ 0.8
VIM-204ENST00000478746 PCDHB15Q9Y5E8 787 aa20.02■□□□□ 0.8
VIM-204ENST00000478746 SALL3Q9BXA9 1300 aa20.02■□□□□ 0.79
VIM-204ENST00000478746 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.01■□□□□ 0.79
VIM-204ENST00000478746 RGS20O76081 388 aa20.01■□□□□ 0.79
VIM-204ENST00000478746 IRS1P35568 1242 aa20.01■□□□□ 0.79
VIM-204ENST00000478746 RPAINQ86UA6 219 aa20.01■□□□□ 0.79
VIM-204ENST00000478746 ZNF589Q86UQ0 364 aaPredicted RBP20.01■□□□□ 0.79
VIM-204ENST00000478746 IQCA1Q86XH1 822 aa20.01■□□□□ 0.79
VIM-204ENST00000478746 PDCD2LQ9BRP1 358 aa20.01■□□□□ 0.79
VIM-204ENST00000478746 IFIH1Q9BYX4 1025 aaKnown RBP20.01■□□□□ 0.79
VIM-204ENST00000478746 JMJD4Q9H9V9 463 aa20.01■□□□□ 0.79
VIM-204ENST00000478746 MLXIPQ9HAP2 919 aa20.01■□□□□ 0.79
VIM-204ENST00000478746 TRIOO75962 3097 aa20.01■□□□□ 0.79
VIM-204ENST00000478746 MYH6P13533 1939 aa20■□□□□ 0.79
VIM-204ENST00000478746 H3BRB1 525 aa20■□□□□ 0.79
VIM-204ENST00000478746 TREHO43280 583 aa20■□□□□ 0.79
VIM-204ENST00000478746 TGFB3P10600 412 aa20■□□□□ 0.79
VIM-204ENST00000478746 LTBRP36941 435 aa20■□□□□ 0.79
VIM-204ENST00000478746 HSD17B4P51659 736 aa20■□□□□ 0.79
VIM-204ENST00000478746 SP2Q02086 613 aa20■□□□□ 0.79
VIM-204ENST00000478746 DIEXFQ68CQ4 756 aaKnown RBP20■□□□□ 0.79
VIM-204ENST00000478746 VSIG10LQ86VR7 867 aa20■□□□□ 0.79
VIM-204ENST00000478746 TICAM2Q86XR7 235 aa20■□□□□ 0.79
VIM-204ENST00000478746 FIBCD1Q8N539 461 aa20■□□□□ 0.79
VIM-204ENST00000478746 IL17RAQ96F46 866 aa20■□□□□ 0.79
VIM-204ENST00000478746 OSBPL7Q9BZF2 842 aa20■□□□□ 0.79
VIM-204ENST00000478746 RNPEPQ9H4A4 650 aa20■□□□□ 0.79
VIM-204ENST00000478746 TUT1Q9H6E5 874 aaKnown RBP20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms