RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 GH1P01241 217 aa11.09□□□□□ -0.63
HDAC3-208ENST00000476739 GNA11P29992 359 aa11.09□□□□□ -0.63
HDAC3-208ENST00000476739 RTP1P59025 263 aa11.09□□□□□ -0.63
HDAC3-208ENST00000476739 NLRP5P59047 1200 aa11.09□□□□□ -0.63
HDAC3-208ENST00000476739 AP3B2Q13367 1082 aa11.09□□□□□ -0.63
HDAC3-208ENST00000476739 MYSM1Q5VVJ2 828 aa11.09□□□□□ -0.63
HDAC3-208ENST00000476739 PCSK9Q8NBP7 692 aaKnown RBP11.09□□□□□ -0.63
HDAC3-208ENST00000476739 CCDC148Q8NFR7 591 aa11.09□□□□□ -0.63
HDAC3-208ENST00000476739 CCDC12Q8WUD4 166 aaPredicted RBP11.09□□□□□ -0.63
HDAC3-208ENST00000476739 CRYGNQ8WXF5 182 aa11.09□□□□□ -0.63
HDAC3-208ENST00000476739 STARD7Q9NQZ5 370 aa11.09□□□□□ -0.63
HDAC3-208ENST00000476739 ATP11BQ9Y2G3 1177 aa11.09□□□□□ -0.63
HDAC3-208ENST00000476739 STAM2O75886 525 aa11.08□□□□□ -0.64
HDAC3-208ENST00000476739 GGPS1O95749 300 aa11.08□□□□□ -0.64
HDAC3-208ENST00000476739 FOSP01100 380 aaPredicted RBP11.08□□□□□ -0.64
HDAC3-208ENST00000476739 MMP3P08254 477 aa11.08□□□□□ -0.64
HDAC3-208ENST00000476739 MYL3P08590 195 aa11.08□□□□□ -0.64
HDAC3-208ENST00000476739 SYN1P17600 705 aa11.08□□□□□ -0.64
HDAC3-208ENST00000476739 SREBF1P36956 1147 aa11.08□□□□□ -0.64
HDAC3-208ENST00000476739 FOSBP53539 338 aa11.08□□□□□ -0.64
HDAC3-208ENST00000476739 PURAQ00577 322 aaKnown RBP11.08□□□□□ -0.64
HDAC3-208ENST00000476739 HSDL1Q3SXM5 330 aa11.08□□□□□ -0.64
HDAC3-208ENST00000476739 CELF3Q5SZQ8 465 aaKnown RBP11.08□□□□□ -0.64
HDAC3-208ENST00000476739 C1orf53Q5VUE5 145 aa11.08□□□□□ -0.64
HDAC3-208ENST00000476739 XRRA1Q6P2D8 792 aa11.08□□□□□ -0.64
HDAC3-208ENST00000476739 REXO1Q8N1G1 1221 aaKnown RBP11.08□□□□□ -0.64
HDAC3-208ENST00000476739 OXER1Q8TDS5 423 aa11.08□□□□□ -0.64
HDAC3-208ENST00000476739 EMID1Q96A84 441 aaPredicted RBP11.08□□□□□ -0.64
HDAC3-208ENST00000476739 ZSCAN31Q96LW9 406 aaPredicted RBP11.08□□□□□ -0.64
HDAC3-208ENST00000476739 GLT1D1Q96MS3 346 aa11.08□□□□□ -0.64
HDAC3-208ENST00000476739 MXRA8Q9BRK3 442 aa11.08□□□□□ -0.64
HDAC3-208ENST00000476739 ALG1Q9BT22 464 aa11.08□□□□□ -0.64
HDAC3-208ENST00000476739 PHF20Q9BVI0 1012 aa11.08□□□□□ -0.64
HDAC3-208ENST00000476739 GLT8D2Q9H1C3 349 aa11.08□□□□□ -0.64
HDAC3-208ENST00000476739 PKD2L1Q9P0L9 805 aa11.08□□□□□ -0.64
HDAC3-208ENST00000476739 ZMYND8Q9ULU4 1186 aaPredicted RBP11.08□□□□□ -0.64
HDAC3-208ENST00000476739 PCDHA4Q9UN74 947 aa11.08□□□□□ -0.64
HDAC3-208ENST00000476739 FAM86B1E9PN63 330 aa11.07□□□□□ -0.64
HDAC3-208ENST00000476739 FIBPO43427 364 aa11.07□□□□□ -0.64
HDAC3-208ENST00000476739 ZEB2O60315 1214 aa11.07□□□□□ -0.64
HDAC3-208ENST00000476739 FAM86B2P0C5J1 330 aa11.07□□□□□ -0.64
HDAC3-208ENST00000476739 ARP10275 920 aa11.07□□□□□ -0.64
HDAC3-208ENST00000476739 TGFB3P10600 412 aa11.07□□□□□ -0.64
HDAC3-208ENST00000476739 KCNA2P16389 499 aa11.07□□□□□ -0.64
HDAC3-208ENST00000476739 CPT1AP50416 773 aa11.07□□□□□ -0.64
HDAC3-208ENST00000476739 CDK7P50613 346 aa11.07□□□□□ -0.64
HDAC3-208ENST00000476739 ARHGAP4P98171 946 aa11.07□□□□□ -0.64
HDAC3-208ENST00000476739 LAMC2Q13753 1193 aa11.07□□□□□ -0.64
HDAC3-208ENST00000476739 GNPTABQ3T906 1256 aa11.07□□□□□ -0.64
HDAC3-208ENST00000476739 KCNV1Q6PIU1 500 aa11.07□□□□□ -0.64
HDAC3-208ENST00000476739 CYFIP1Q7L576 1253 aa11.07□□□□□ -0.64
HDAC3-208ENST00000476739 SH3RF1Q7Z6J0 888 aa11.07□□□□□ -0.64
HDAC3-208ENST00000476739 NLRX1Q86UT6 975 aa11.07□□□□□ -0.64
HDAC3-208ENST00000476739 TEX2Q8IWB9 1127 aa11.07□□□□□ -0.64
HDAC3-208ENST00000476739 DHX37Q8IY37 1157 aaKnown RBP11.07□□□□□ -0.64
HDAC3-208ENST00000476739 BLIDQ8IZY5 108 aa11.07□□□□□ -0.64
HDAC3-208ENST00000476739 DAGLBQ8NCG7 672 aa11.07□□□□□ -0.64
HDAC3-208ENST00000476739 VTI1AQ96AJ9 217 aa11.07□□□□□ -0.64
HDAC3-208ENST00000476739 GPRASP2Q96D09 838 aa11.07□□□□□ -0.64
HDAC3-208ENST00000476739 UIMC1Q96RL1 719 aa11.07□□□□□ -0.64
HDAC3-208ENST00000476739 EHMT1Q9H9B1 1298 aa11.07□□□□□ -0.64
HDAC3-208ENST00000476739 JADE2Q9NQC1 790 aa11.07□□□□□ -0.64
HDAC3-208ENST00000476739 SH2B1Q9NRF2 756 aaPredicted RBP11.07□□□□□ -0.64
HDAC3-208ENST00000476739 ELP1O95163 1332 aa11.07□□□□□ -0.64
HDAC3-208ENST00000476739 SCN10AQ9Y5Y9 1956 aa11.07□□□□□ -0.64
HDAC3-208ENST00000476739 IGLV3-22A0A075B6J6 115 aa11.06□□□□□ -0.64
HDAC3-208ENST00000476739 A0A0U1RQG5 324 aaPredicted RBP11.06□□□□□ -0.64
HDAC3-208ENST00000476739 ST18O60284 1047 aa11.06□□□□□ -0.64
HDAC3-208ENST00000476739 PQBP1O60828 265 aaKnown RBP11.06□□□□□ -0.64
HDAC3-208ENST00000476739 CYP3A4P08684 503 aa11.06□□□□□ -0.64
HDAC3-208ENST00000476739 ZNF286BP0CG31 522 aa11.06□□□□□ -0.64
HDAC3-208ENST00000476739 TLE2Q04725 743 aa11.06□□□□□ -0.64
HDAC3-208ENST00000476739 MTMR1Q13613 665 aa11.06□□□□□ -0.64
HDAC3-208ENST00000476739 ITGA7Q13683 1181 aa11.06□□□□□ -0.64
HDAC3-208ENST00000476739 CEP55Q53EZ4 464 aa11.06□□□□□ -0.64
HDAC3-208ENST00000476739 EARS2Q5JPH6 523 aaKnown RBP11.06□□□□□ -0.64
HDAC3-208ENST00000476739 PPTC7Q8NI37 304 aa11.06□□□□□ -0.64
HDAC3-208ENST00000476739 BICD2Q8TD16 824 aa11.06□□□□□ -0.64
HDAC3-208ENST00000476739 KAT2BQ92831 832 aa11.06□□□□□ -0.64
HDAC3-208ENST00000476739 SPATA33Q96N06 139 aa11.06□□□□□ -0.64
HDAC3-208ENST00000476739 MLXIPQ9HAP2 919 aa11.06□□□□□ -0.64
HDAC3-208ENST00000476739 KCNH7Q9NS40 1196 aa11.06□□□□□ -0.64
HDAC3-208ENST00000476739 POLR3EQ9NVU0 708 aa11.06□□□□□ -0.64
HDAC3-208ENST00000476739 TRIM43BA6NCK2 446 aa11.05□□□□□ -0.64
HDAC3-208ENST00000476739 FAM205CA6NFA0 338 aa11.05□□□□□ -0.64
HDAC3-208ENST00000476739 ARVCFO00192 962 aa11.05□□□□□ -0.64
HDAC3-208ENST00000476739 MEIS1O00470 390 aa11.05□□□□□ -0.64
HDAC3-208ENST00000476739 CABYRO75952 493 aa11.05□□□□□ -0.64
HDAC3-208ENST00000476739 ITGB8P26012 769 aa11.05□□□□□ -0.64
HDAC3-208ENST00000476739 ZNF76P36508 570 aa11.05□□□□□ -0.64
HDAC3-208ENST00000476739 CHMP4BP1P59074 171 aa11.05□□□□□ -0.64
HDAC3-208ENST00000476739 SP4Q02446 784 aa11.05□□□□□ -0.64
HDAC3-208ENST00000476739 FAAP100Q0VG06 881 aa11.05□□□□□ -0.64
HDAC3-208ENST00000476739 NR5A1Q13285 461 aa11.05□□□□□ -0.64
HDAC3-208ENST00000476739 ITGB3BPQ13352 177 aaPredicted RBP11.05□□□□□ -0.64
HDAC3-208ENST00000476739 NEDD9Q14511 834 aa11.05□□□□□ -0.64
HDAC3-208ENST00000476739 KRT40Q6A162 431 aa11.05□□□□□ -0.64
HDAC3-208ENST00000476739 METTL7BQ6UX53 244 aa11.05□□□□□ -0.64
HDAC3-208ENST00000476739 ANKRD33Q7Z3H0 272 aa11.05□□□□□ -0.64
HDAC3-208ENST00000476739 FAM126BQ8IXS8 530 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms