RNA–Protein interactions for RNA: ENST00000473778.5

C9orf3-214, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 2,396 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-214ENST00000473778 SLC16A2P36021 539 aa12.14□□□□□ -0.47
C9orf3-214ENST00000473778 SLC7A5Q01650 507 aa12.14□□□□□ -0.47
C9orf3-214ENST00000473778 TMEM119Q4V9L6 283 aa12.14□□□□□ -0.47
C9orf3-214ENST00000473778 ZCWPW2Q504Y3 356 aa12.14□□□□□ -0.47
C9orf3-214ENST00000473778 FAM196AQ6ZSG2 479 aa12.14□□□□□ -0.47
C9orf3-214ENST00000473778 CAGE1Q8TC20 777 aa12.14□□□□□ -0.47
C9orf3-214ENST00000473778 PLEKHA4Q9H4M7 779 aa12.14□□□□□ -0.47
C9orf3-214ENST00000473778 VIPAS39Q9H9C1 493 aa12.14□□□□□ -0.47
C9orf3-214ENST00000473778 JMJD4Q9H9V9 463 aa12.14□□□□□ -0.47
C9orf3-214ENST00000473778 ZNF287Q9HBT7 754 aa12.14□□□□□ -0.47
C9orf3-214ENST00000473778 LRRC4BQ9NT99 713 aa12.14□□□□□ -0.47
C9orf3-214ENST00000473778 STK17AQ9UEE5 414 aa12.14□□□□□ -0.47
C9orf3-214ENST00000473778 SLC1A4P43007 532 aa12.13□□□□□ -0.47
C9orf3-214ENST00000473778 TNNI2P48788 182 aa12.13□□□□□ -0.47
C9orf3-214ENST00000473778 ADCY7P51828 1080 aa12.13□□□□□ -0.47
C9orf3-214ENST00000473778 SPA17Q15506 151 aa12.13□□□□□ -0.47
C9orf3-214ENST00000473778 FAM163AQ96GL9 167 aaPredicted RBP12.13□□□□□ -0.47
C9orf3-214ENST00000473778 RASSF4Q9H2L5 321 aa12.13□□□□□ -0.47
C9orf3-214ENST00000473778 MED4Q9NPJ6 270 aa12.13□□□□□ -0.47
C9orf3-214ENST00000473778 TBC1D7Q9P0N9 293 aa12.13□□□□□ -0.47
C9orf3-214ENST00000473778 JRKLQ9Y4A0 524 aa12.13□□□□□ -0.47
C9orf3-214ENST00000473778 IGKV6D-41A0A0C4DH26 115 aa12.13□□□□□ -0.47
C9orf3-214ENST00000473778 BRD2P25440 801 aaKnown RBP12.13□□□□□ -0.47
C9orf3-214ENST00000473778 CLK2P49760 499 aaKnown RBP12.13□□□□□ -0.47
C9orf3-214ENST00000473778 MMP14P50281 582 aa12.13□□□□□ -0.47
C9orf3-214ENST00000473778 CKAP4Q07065 602 aaKnown RBP12.13□□□□□ -0.47
C9orf3-214ENST00000473778 SHROOM1Q2M3G4 852 aaPredicted RBP12.13□□□□□ -0.47
C9orf3-214ENST00000473778 CRY2Q49AN0 593 aa12.13□□□□□ -0.47
C9orf3-214ENST00000473778 HSP90B2PQ58FF3 399 aa12.13□□□□□ -0.47
C9orf3-214ENST00000473778 TRAPPC3LQ5T215 181 aa12.13□□□□□ -0.47
C9orf3-214ENST00000473778 LRRC31Q6UY01 552 aa12.13□□□□□ -0.47
C9orf3-214ENST00000473778 DPP8Q6V1X1 898 aaPredicted RBP12.13□□□□□ -0.47
C9orf3-214ENST00000473778 ADGRF4Q8IZF3 695 aa12.13□□□□□ -0.47
C9orf3-214ENST00000473778 SPATA4Q8NEY3 305 aa12.13□□□□□ -0.47
C9orf3-214ENST00000473778 TRIM58Q8NG06 486 aa12.13□□□□□ -0.47
C9orf3-214ENST00000473778 AENQ8WTP8 325 aaKnown RBP12.13□□□□□ -0.47
C9orf3-214ENST00000473778 OSBPL9Q96SU4 736 aa12.13□□□□□ -0.47
C9orf3-214ENST00000473778 NLRC4Q9NPP4 1024 aa12.13□□□□□ -0.47
C9orf3-214ENST00000473778 PLIN4Q96Q06 1357 aa12.13□□□□□ -0.47
C9orf3-214ENST00000473778 LTBP1Q14766 1721 aa12.13□□□□□ -0.47
C9orf3-214ENST00000473778 MYH4Q9Y623 1939 aa12.13□□□□□ -0.47
C9orf3-214ENST00000473778 NPHP3-ACAD11A0A0J9YXS1 232 aa12.12□□□□□ -0.47
C9orf3-214ENST00000473778 BUB1O43683 1085 aa12.12□□□□□ -0.47
C9orf3-214ENST00000473778 PPP1R2P41236 205 aa12.12□□□□□ -0.47
C9orf3-214ENST00000473778 RASSF7Q02833 373 aa12.12□□□□□ -0.47
C9orf3-214ENST00000473778 COASYQ13057 564 aa12.12□□□□□ -0.47
C9orf3-214ENST00000473778 VPS72Q15906 364 aa12.12□□□□□ -0.47
C9orf3-214ENST00000473778 FNBP4Q8N3X1 1017 aaPredicted RBP12.12□□□□□ -0.47
C9orf3-214ENST00000473778 TBC1D16Q8TBP0 767 aa12.12□□□□□ -0.47
C9orf3-214ENST00000473778 CDK5RAP3Q96JB5 506 aa12.12□□□□□ -0.47
C9orf3-214ENST00000473778 RPGRIP1Q96KN7 1286 aa12.12□□□□□ -0.47
C9orf3-214ENST00000473778 MXD3Q9BW11 206 aa12.12□□□□□ -0.47
C9orf3-214ENST00000473778 TLR10Q9BXR5 811 aa12.12□□□□□ -0.47
C9orf3-214ENST00000473778 GGA1Q9UJY5 639 aa12.12□□□□□ -0.47
C9orf3-214ENST00000473778 F8W031 263 aaPredicted RBP12.12□□□□□ -0.47
C9orf3-214ENST00000473778 AKR1B10O60218 316 aa12.12□□□□□ -0.47
C9orf3-214ENST00000473778 MATR3P43243 847 aaKnown RBP eCLIP12.12□□□□□ -0.47
C9orf3-214ENST00000473778 LRRC63Q05C16 580 aa12.12□□□□□ -0.47
C9orf3-214ENST00000473778 PDIA5Q14554 519 aa12.12□□□□□ -0.47
C9orf3-214ENST00000473778 PDXDC1Q6P996 788 aa12.12□□□□□ -0.47
C9orf3-214ENST00000473778 ZNF572Q7Z3I7 529 aaPredicted RBP12.12□□□□□ -0.47
C9orf3-214ENST00000473778 CERS5Q8N5B7 392 aa12.12□□□□□ -0.47
C9orf3-214ENST00000473778 RPGRQ92834 1020 aaKnown RBP12.12□□□□□ -0.47
C9orf3-214ENST00000473778 MS4A14Q96JA4 679 aa12.12□□□□□ -0.47
C9orf3-214ENST00000473778 CRACR2AQ9BSW2 395 aa12.12□□□□□ -0.47
C9orf3-214ENST00000473778 TSGA10Q9BZW7 698 aa12.12□□□□□ -0.47
C9orf3-214ENST00000473778 E9PMD0 336 aa12.11□□□□□ -0.47
C9orf3-214ENST00000473778 GTF2IP78347 998 aa12.11□□□□□ -0.47
C9orf3-214ENST00000473778 ZNF543Q08ER8 600 aa12.11□□□□□ -0.47
C9orf3-214ENST00000473778 ORC2Q13416 577 aaPredicted RBP12.11□□□□□ -0.47
C9orf3-214ENST00000473778 KLHDC7AQ5VTJ3 777 aa12.11□□□□□ -0.47
C9orf3-214ENST00000473778 KCTD1Q719H9 257 aa12.11□□□□□ -0.47
C9orf3-214ENST00000473778 MMGT1Q8N4V1 131 aa12.11□□□□□ -0.47
C9orf3-214ENST00000473778 DEF6Q9H4E7 631 aa12.11□□□□□ -0.47
C9orf3-214ENST00000473778 RIC8AQ9NPQ8 531 aa12.11□□□□□ -0.47
C9orf3-214ENST00000473778 PCDHA2Q9Y5H9 948 aa12.11□□□□□ -0.47
C9orf3-214ENST00000473778 USP17L10C9JJH3 530 aa12.11□□□□□ -0.47
C9orf3-214ENST00000473778 MYO1CO00159 1063 aa12.11□□□□□ -0.47
C9orf3-214ENST00000473778 TACC1O75410 805 aa12.11□□□□□ -0.47
C9orf3-214ENST00000473778 RPS6KA5O75582 802 aa12.11□□□□□ -0.47
C9orf3-214ENST00000473778 NOP2P46087 812 aaKnown RBP12.11□□□□□ -0.47
C9orf3-214ENST00000473778 KRT79Q5XKE5 535 aa12.11□□□□□ -0.47
C9orf3-214ENST00000473778 HAUS3Q68CZ6 603 aa12.11□□□□□ -0.47
C9orf3-214ENST00000473778 PPP4R3AQ6IN85 833 aa12.11□□□□□ -0.47
C9orf3-214ENST00000473778 SRLQ86TD4 932 aa12.11□□□□□ -0.47
C9orf3-214ENST00000473778 CCDC84Q86UT8 332 aaPredicted RBP12.11□□□□□ -0.47
C9orf3-214ENST00000473778 NGLY1Q96IV0 654 aa12.11□□□□□ -0.47
C9orf3-214ENST00000473778 RBM12Q9NTZ6 932 aaKnown RBP12.11□□□□□ -0.47
C9orf3-214ENST00000473778 DDX25Q9UHL0 483 aaKnown RBP12.11□□□□□ -0.47
C9orf3-214ENST00000473778 ABCB11O95342 1321 aa12.1□□□□□ -0.47
C9orf3-214ENST00000473778 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.1□□□□□ -0.47
C9orf3-214ENST00000473778 USP17L15C9J2P7 530 aa12.1□□□□□ -0.47
C9orf3-214ENST00000473778 USP17L13C9JLJ4 530 aa12.1□□□□□ -0.47
C9orf3-214ENST00000473778 USP17L11C9JVI0 530 aa12.1□□□□□ -0.47
C9orf3-214ENST00000473778 USP17L18D6R9N7 530 aa12.1□□□□□ -0.47
C9orf3-214ENST00000473778 USP17L22D6RA61 530 aa12.1□□□□□ -0.47
C9orf3-214ENST00000473778 USP17L17D6RBQ6 530 aa12.1□□□□□ -0.47
C9orf3-214ENST00000473778 USP17L19D6RCP7 530 aa12.1□□□□□ -0.47
C9orf3-214ENST00000473778 USP17L20D6RJB6 530 aa12.1□□□□□ -0.47
C9orf3-214ENST00000473778 PJA2O43164 708 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms