RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 ZNF408Q9H9D4 720 aa10.54□□□□□ -0.72
VPS52-216ENST00000471309 PXMP2Q9NR77 195 aa10.54□□□□□ -0.72
VPS52-216ENST00000471309 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.54□□□□□ -0.72
VPS52-216ENST00000471309 FBXO40Q9UH90 709 aa10.54□□□□□ -0.72
VPS52-216ENST00000471309 TRPM7Q96QT4 1865 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 SMTNL1A8MU46 457 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 PSMD10O75832 226 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 RPN1P04843 607 aaKnown RBP10.53□□□□□ -0.72
VPS52-216ENST00000471309 ITGB5P18084 799 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 CASP1P29466 404 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 GJA5P36382 358 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 CCT6AP40227 531 aaKnown RBP10.53□□□□□ -0.72
VPS52-216ENST00000471309 HERVK_113P62684 666 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 AMPD3Q01432 767 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 MYL5Q02045 173 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 PPP2R5CQ13362 524 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 KCNB1Q14721 858 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 PGM5Q15124 567 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 ISM2Q6H9L7 571 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 CNNM4Q6P4Q7 775 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 RIOX2Q8IUF8 465 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 KCTD17Q8N5Z5 321 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 IL31RAQ8NI17 732 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 LARP4BQ92615 738 aaKnown RBP10.53□□□□□ -0.72
VPS52-216ENST00000471309 RAD54LQ92698 747 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 STAMQ92783 540 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 SLC10A4Q96EP9 437 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 TAAR1Q96RJ0 339 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 PLIN2Q99541 437 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 RIT2Q99578 217 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 C7orf25Q9BPX7 421 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 NUDT12Q9BQG2 462 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 PDCD2LQ9BRP1 358 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 TRIM9Q9C026 710 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 LRRC27Q9C0I9 530 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 BLZF1Q9H2G9 400 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 GBA2Q9HCG7 927 aaPredicted RBP10.53□□□□□ -0.72
VPS52-216ENST00000471309 A1CFQ9NQ94 594 aaKnown RBP10.53□□□□□ -0.72
VPS52-216ENST00000471309 BLOC1S4Q9NUP1 217 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 CYP39A1Q9NYL5 469 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 BTBD7Q9P203 1132 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 SLC45A1Q9Y2W3 748 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 UBIAD1Q9Y5Z9 338 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 PFASO15067 1338 aa10.53□□□□□ -0.72
VPS52-216ENST00000471309 EIF2AK2P19525 551 aaKnown RBP10.52□□□□□ -0.73
VPS52-216ENST00000471309 OSBPP22059 807 aa10.52□□□□□ -0.73
VPS52-216ENST00000471309 RPA1P27694 616 aa10.52□□□□□ -0.73
VPS52-216ENST00000471309 ERCC5P28715 1186 aaPredicted RBP10.52□□□□□ -0.73
VPS52-216ENST00000471309 COPB2P35606 906 aa10.52□□□□□ -0.73
VPS52-216ENST00000471309 TPM4P67936 248 aa10.52□□□□□ -0.73
VPS52-216ENST00000471309 MRPS9P82933 396 aaKnown RBP10.52□□□□□ -0.73
VPS52-216ENST00000471309 FMR1Q06787 632 aaKnown RBP eCLIP10.52□□□□□ -0.73
VPS52-216ENST00000471309 PLS1Q14651 629 aa10.52□□□□□ -0.73
VPS52-216ENST00000471309 LRCH2Q5VUJ6 765 aa10.52□□□□□ -0.73
VPS52-216ENST00000471309 ARHGEF16Q5VV41 709 aa10.52□□□□□ -0.73
VPS52-216ENST00000471309 NCAPH2Q6IBW4 605 aa10.52□□□□□ -0.73
VPS52-216ENST00000471309 GPAT2Q6NUI2 795 aa10.52□□□□□ -0.73
VPS52-216ENST00000471309 POTEEQ6S8J3 1075 aa10.52□□□□□ -0.73
VPS52-216ENST00000471309 SARM1Q6SZW1 724 aa10.52□□□□□ -0.73
VPS52-216ENST00000471309 B3GNT9Q6UX72 402 aa10.52□□□□□ -0.73
VPS52-216ENST00000471309 SV2BQ7L1I2 683 aa10.52□□□□□ -0.73
VPS52-216ENST00000471309 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.52□□□□□ -0.73
VPS52-216ENST00000471309 OTOP1Q7RTM1 612 aa10.52□□□□□ -0.73
VPS52-216ENST00000471309 C2orf69Q8N8R5 385 aa10.52□□□□□ -0.73
VPS52-216ENST00000471309 GTF3C2Q8WUA4 911 aaPredicted RBP10.52□□□□□ -0.73
VPS52-216ENST00000471309 RMDN3Q96TC7 470 aa10.52□□□□□ -0.73
VPS52-216ENST00000471309 ZNF577Q9BSK1 485 aa10.52□□□□□ -0.73
VPS52-216ENST00000471309 POLR3CQ9BUI4 534 aaPredicted RBP10.52□□□□□ -0.73
VPS52-216ENST00000471309 GTPBP4Q9BZE4 634 aaKnown RBP10.52□□□□□ -0.73
VPS52-216ENST00000471309 SPATC1LQ9H0A9 340 aa10.52□□□□□ -0.73
VPS52-216ENST00000471309 NMRK2Q9NPI5 230 aa10.52□□□□□ -0.73
VPS52-216ENST00000471309 JADE2Q9NQC1 790 aa10.52□□□□□ -0.73
VPS52-216ENST00000471309 PNMA3Q9UL41 463 aa10.52□□□□□ -0.73
VPS52-216ENST00000471309 LOXHD1Q8IVV2 1947 aa10.51□□□□□ -0.73
VPS52-216ENST00000471309 CEP350Q5VT06 3117 aa10.51□□□□□ -0.73
VPS52-216ENST00000471309 POTEB3A0JP26 581 aa10.51□□□□□ -0.73
VPS52-216ENST00000471309 IPO5O00410 1097 aaKnown RBP10.51□□□□□ -0.73
VPS52-216ENST00000471309 KLRC4O43908 158 aa10.51□□□□□ -0.73
VPS52-216ENST00000471309 GAS7O60861 476 aa10.51□□□□□ -0.73
VPS52-216ENST00000471309 MED24O75448 989 aa10.51□□□□□ -0.73
VPS52-216ENST00000471309 CNMDO75829 334 aa10.51□□□□□ -0.73
VPS52-216ENST00000471309 STAM2O75886 525 aa10.51□□□□□ -0.73
VPS52-216ENST00000471309 RHOBTB3O94955 611 aa10.51□□□□□ -0.73
VPS52-216ENST00000471309 CELF2O95319 508 aaKnown RBP10.51□□□□□ -0.73
VPS52-216ENST00000471309 ADCY5O95622 1261 aa10.51□□□□□ -0.73
VPS52-216ENST00000471309 ZBTB48P10074 688 aaPredicted RBP10.51□□□□□ -0.73
VPS52-216ENST00000471309 ARP10275 920 aa10.51□□□□□ -0.73
VPS52-216ENST00000471309 CETPP11597 493 aa10.51□□□□□ -0.73
VPS52-216ENST00000471309 MUTP22033 750 aa10.51□□□□□ -0.73
VPS52-216ENST00000471309 CCND2P30279 289 aa10.51□□□□□ -0.73
VPS52-216ENST00000471309 GTF2A2P52657 109 aa10.51□□□□□ -0.73
VPS52-216ENST00000471309 MTMR1Q13613 665 aa10.51□□□□□ -0.73
VPS52-216ENST00000471309 NCAPHQ15003 741 aa10.51□□□□□ -0.73
VPS52-216ENST00000471309 ECM1Q16610 540 aa10.51□□□□□ -0.73
VPS52-216ENST00000471309 ZNF658Q5TYW1 1059 aaPredicted RBP10.51□□□□□ -0.73
VPS52-216ENST00000471309 CHADLQ6NUI6 762 aa10.51□□□□□ -0.73
VPS52-216ENST00000471309 POTEBQ6S5H4 581 aa10.51□□□□□ -0.73
VPS52-216ENST00000471309 NEK9Q8TD19 979 aa10.51□□□□□ -0.73
VPS52-216ENST00000471309 NSUN6Q8TEA1 469 aaKnown RBP10.51□□□□□ -0.73
VPS52-216ENST00000471309 CCDC47Q96A33 483 aaKnown RBP10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms