RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 NLRC5Q86WI3 1866 aa13.83□□□□□ -0.2
SQSTM1-206ENST00000466342 SEC24BO95487 1268 aa13.83□□□□□ -0.2
SQSTM1-206ENST00000466342 ICAM1P05362 532 aa13.83□□□□□ -0.2
SQSTM1-206ENST00000466342 MYL3P08590 195 aa13.83□□□□□ -0.2
SQSTM1-206ENST00000466342 HMGB1P09429 215 aaKnown RBP13.83□□□□□ -0.2
SQSTM1-206ENST00000466342 SNHG28P0DPA3 235 aa13.83□□□□□ -0.2
SQSTM1-206ENST00000466342 PDHBP11177 359 aa13.83□□□□□ -0.2
SQSTM1-206ENST00000466342 ALAS1P13196 640 aa13.83□□□□□ -0.2
SQSTM1-206ENST00000466342 DEFB103AP81534 67 aa13.83□□□□□ -0.2
SQSTM1-206ENST00000466342 TCF15Q12870 199 aa13.83□□□□□ -0.2
SQSTM1-206ENST00000466342 WTAPQ15007 396 aa13.83□□□□□ -0.2
SQSTM1-206ENST00000466342 DUSP28Q4G0W2 176 aa13.83□□□□□ -0.2
SQSTM1-206ENST00000466342 TTBK2Q6IQ55 1244 aa13.83□□□□□ -0.2
SQSTM1-206ENST00000466342 EEPD1Q7L9B9 569 aa13.83□□□□□ -0.2
SQSTM1-206ENST00000466342 RASGRP2Q7LDG7 609 aa13.83□□□□□ -0.2
SQSTM1-206ENST00000466342 FBXO22Q8NEZ5 403 aa13.83□□□□□ -0.2
SQSTM1-206ENST00000466342 IGDCC4Q8TDY8 1250 aa13.83□□□□□ -0.2
SQSTM1-206ENST00000466342 EDAQ92838 391 aa13.83□□□□□ -0.2
SQSTM1-206ENST00000466342 JAKMIP1Q96N16 626 aaKnown RBP13.83□□□□□ -0.2
SQSTM1-206ENST00000466342 RANBP17Q9H2T7 1088 aaKnown RBP13.83□□□□□ -0.2
SQSTM1-206ENST00000466342 A1CFQ9NQ94 594 aaKnown RBP13.83□□□□□ -0.2
SQSTM1-206ENST00000466342 GPHNQ9NQX3 736 aaPredicted RBP13.83□□□□□ -0.2
SQSTM1-206ENST00000466342 LCTP09848 1927 aa13.83□□□□□ -0.2
SQSTM1-206ENST00000466342 SLC16A2P36021 539 aa13.82□□□□□ -0.2
SQSTM1-206ENST00000466342 CPT1AP50416 773 aa13.82□□□□□ -0.2
SQSTM1-206ENST00000466342 PTPN11Q06124 597 aaPredicted RBP13.82□□□□□ -0.2
SQSTM1-206ENST00000466342 ZNF543Q08ER8 600 aa13.82□□□□□ -0.2
SQSTM1-206ENST00000466342 GPNMBQ14956 572 aa13.82□□□□□ -0.2
SQSTM1-206ENST00000466342 GPATCH4Q5T3I0 446 aaKnown RBP13.82□□□□□ -0.2
SQSTM1-206ENST00000466342 SYDE2Q5VT97 1194 aa13.82□□□□□ -0.2
SQSTM1-206ENST00000466342 NFRKBQ6P4R8 1299 aa13.82□□□□□ -0.2
SQSTM1-206ENST00000466342 DHX32Q7L7V1 743 aaKnown RBP13.82□□□□□ -0.2
SQSTM1-206ENST00000466342 FBXO16Q8IX29 292 aaPredicted RBP13.82□□□□□ -0.2
SQSTM1-206ENST00000466342 PBXIP1Q96AQ6 731 aa13.82□□□□□ -0.2
SQSTM1-206ENST00000466342 LY9Q9HBG7 655 aa13.82□□□□□ -0.2
SQSTM1-206ENST00000466342 VTA1Q9NP79 307 aa13.82□□□□□ -0.2
SQSTM1-206ENST00000466342 GPCPD1Q9NPB8 672 aa13.82□□□□□ -0.2
SQSTM1-206ENST00000466342 MUTYHQ9UIF7 546 aa13.82□□□□□ -0.2
SQSTM1-206ENST00000466342 CCPG1Q9ULG6 757 aa13.82□□□□□ -0.2
SQSTM1-206ENST00000466342 DDX49Q9Y6V7 483 aaKnown RBP13.82□□□□□ -0.2
SQSTM1-206ENST00000466342 PLXNA3P51805 1871 aa13.81□□□□□ -0.2
SQSTM1-206ENST00000466342 ABHD14A-ACY1A0A1B0GW23 586 aa13.81□□□□□ -0.2
SQSTM1-206ENST00000466342 SH2B2O14492 632 aaPredicted RBP13.81□□□□□ -0.2
SQSTM1-206ENST00000466342 PSMA5P28066 241 aa13.81□□□□□ -0.2
SQSTM1-206ENST00000466342 SNAP25P60880 206 aa13.81□□□□□ -0.2
SQSTM1-206ENST00000466342 EXOSC10Q01780 885 aaKnown RBP13.81□□□□□ -0.2
SQSTM1-206ENST00000466342 COL19A1Q14993 1142 aa13.81□□□□□ -0.2
SQSTM1-206ENST00000466342 PTPROQ16827 1216 aa13.81□□□□□ -0.2
SQSTM1-206ENST00000466342 MUM1L1Q5H9M0 696 aa13.81□□□□□ -0.2
SQSTM1-206ENST00000466342 CNKSR3Q6P9H4 555 aa13.81□□□□□ -0.2
SQSTM1-206ENST00000466342 BLOC1S2Q6QNY1 142 aa13.81□□□□□ -0.2
SQSTM1-206ENST00000466342 EP400NLQ6ZTU2 488 aa13.81□□□□□ -0.2
SQSTM1-206ENST00000466342 RNF135Q8IUD6 432 aa13.81□□□□□ -0.2
SQSTM1-206ENST00000466342 AFAP1L1Q8TED9 768 aa13.81□□□□□ -0.2
SQSTM1-206ENST00000466342 POP1Q99575 1024 aaKnown RBP13.81□□□□□ -0.2
SQSTM1-206ENST00000466342 C17orf80Q9BSJ5 609 aa13.81□□□□□ -0.2
SQSTM1-206ENST00000466342 SENP2Q9HC62 589 aa13.81□□□□□ -0.2
SQSTM1-206ENST00000466342 CYP39A1Q9NYL5 469 aa13.81□□□□□ -0.2
SQSTM1-206ENST00000466342 ZFHX2Q9C0A1 2572 aaPredicted RBP13.81□□□□□ -0.2
SQSTM1-206ENST00000466342 FRMPD2Q68DX3 1309 aaPredicted RBP13.81□□□□□ -0.2
SQSTM1-206ENST00000466342 MICAL3Q7RTP6 2002 aa13.81□□□□□ -0.2
SQSTM1-206ENST00000466342 PARNO95453 639 aaKnown RBP13.8□□□□□ -0.2
SQSTM1-206ENST00000466342 LIFRP42702 1097 aa13.8□□□□□ -0.2
SQSTM1-206ENST00000466342 ANAPC15P60006 121 aa13.8□□□□□ -0.2
SQSTM1-206ENST00000466342 TIGD5Q53EQ6 642 aa13.8□□□□□ -0.2
SQSTM1-206ENST00000466342 ASPRV1Q53RT3 343 aa13.8□□□□□ -0.2
SQSTM1-206ENST00000466342 TMTC2Q8N394 836 aa13.8□□□□□ -0.2
SQSTM1-206ENST00000466342 CCDC155Q8N6L0 562 aa13.8□□□□□ -0.2
SQSTM1-206ENST00000466342 BANK1Q8NDB2 785 aa13.8□□□□□ -0.2
SQSTM1-206ENST00000466342 CAGE1Q8TC20 777 aa13.8□□□□□ -0.2
SQSTM1-206ENST00000466342 LRRC2Q9BYS8 371 aa13.8□□□□□ -0.2
SQSTM1-206ENST00000466342 IRF2BPLQ9H1B7 796 aa13.8□□□□□ -0.2
SQSTM1-206ENST00000466342 NOD1Q9Y239 953 aa13.8□□□□□ -0.2
SQSTM1-206ENST00000466342 INSL6Q9Y581 213 aa13.8□□□□□ -0.2
SQSTM1-206ENST00000466342 ATG2AQ2TAZ0 1938 aa13.8□□□□□ -0.2
SQSTM1-206ENST00000466342 LOC102724159A0A0B4J2E5 919 aa13.79□□□□□ -0.2
SQSTM1-206ENST00000466342 TMEM221A6NGB7 291 aa13.79□□□□□ -0.2
SQSTM1-206ENST00000466342 M0R296 226 aa13.79□□□□□ -0.2
SQSTM1-206ENST00000466342 KPNA6O60684 536 aa13.79□□□□□ -0.2
SQSTM1-206ENST00000466342 EFCAB14O75071 495 aa13.79□□□□□ -0.2
SQSTM1-206ENST00000466342 CPA1P15085 419 aa13.79□□□□□ -0.2
SQSTM1-206ENST00000466342 CASTP20810 708 aaKnown RBP13.79□□□□□ -0.2
SQSTM1-206ENST00000466342 RPS6KB1P23443 525 aa13.79□□□□□ -0.2
SQSTM1-206ENST00000466342 IKBKEQ14164 716 aa13.79□□□□□ -0.2
SQSTM1-206ENST00000466342 PWP2Q15269 919 aaKnown RBP13.79□□□□□ -0.2
SQSTM1-206ENST00000466342 SMAD2Q15796 467 aaKnown RBP13.79□□□□□ -0.2
SQSTM1-206ENST00000466342 BRDTQ58F21 947 aaPredicted RBP13.79□□□□□ -0.2
SQSTM1-206ENST00000466342 NSMFQ6X4W1 530 aa13.79□□□□□ -0.2
SQSTM1-206ENST00000466342 TRIM67Q6ZTA4 783 aa13.79□□□□□ -0.2
SQSTM1-206ENST00000466342 ERMP1Q7Z2K6 904 aa13.79□□□□□ -0.2
SQSTM1-206ENST00000466342 CATIPQ7Z7H3 387 aa13.79□□□□□ -0.2
SQSTM1-206ENST00000466342 SUGP1Q8IWZ8 645 aaKnown RBP13.79□□□□□ -0.2
SQSTM1-206ENST00000466342 MORC4Q8TE76 937 aa13.79□□□□□ -0.2
SQSTM1-206ENST00000466342 PPP1R13LQ8WUF5 828 aa13.79□□□□□ -0.2
SQSTM1-206ENST00000466342 IL17RAQ96F46 866 aa13.79□□□□□ -0.2
SQSTM1-206ENST00000466342 TCEANC2Q96MN5 208 aa13.79□□□□□ -0.2
SQSTM1-206ENST00000466342 WDR11Q9BZH6 1224 aa13.79□□□□□ -0.2
SQSTM1-206ENST00000466342 TM6SF1Q9BZW5 370 aa13.79□□□□□ -0.2
SQSTM1-206ENST00000466342 MYO7AQ13402 2215 aa13.79□□□□□ -0.2
SQSTM1-206ENST00000466342 PTPRZ1P23471 2315 aaPredicted RBP13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms