RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 DTNBO60941 627 aa13.41□□□□□ -0.26
USP54-209ENST00000464635 ACVR2BQ13705 512 aa13.41□□□□□ -0.26
USP54-209ENST00000464635 SLC35G1Q2M3R5 365 aa13.41□□□□□ -0.26
USP54-209ENST00000464635 FOXD4L6Q3SYB3 417 aaPredicted RBP13.41□□□□□ -0.26
USP54-209ENST00000464635 LRSAM1Q6UWE0 723 aa13.41□□□□□ -0.26
USP54-209ENST00000464635 FOXD4L3Q6VB84 417 aaPredicted RBP13.41□□□□□ -0.26
USP54-209ENST00000464635 RBM43Q6ZSC3 357 aaKnown RBP13.41□□□□□ -0.26
USP54-209ENST00000464635 BLIDQ8IZY5 108 aa13.41□□□□□ -0.26
USP54-209ENST00000464635 TRERF1Q96PN7 1200 aa13.41□□□□□ -0.26
USP54-209ENST00000464635 PURBQ96QR8 312 aaKnown RBP13.41□□□□□ -0.26
USP54-209ENST00000464635 C6orf50Q9HD87 102 aa13.41□□□□□ -0.26
USP54-209ENST00000464635 GPCPD1Q9NPB8 672 aa13.41□□□□□ -0.26
USP54-209ENST00000464635 GJB4Q9NTQ9 266 aa13.41□□□□□ -0.26
USP54-209ENST00000464635 VPS54Q9P1Q0 977 aa13.41□□□□□ -0.26
USP54-209ENST00000464635 FAM184BQ9ULE4 1060 aa13.41□□□□□ -0.26
USP54-209ENST00000464635 KCNJ14Q9UNX9 436 aa13.41□□□□□ -0.26
USP54-209ENST00000464635 POTEB2H3BUK9 544 aa13.4□□□□□ -0.26
USP54-209ENST00000464635 LAD1O00515 517 aa13.4□□□□□ -0.26
USP54-209ENST00000464635 CUTAO60888 179 aa13.4□□□□□ -0.26
USP54-209ENST00000464635 PPFIA3O75145 1194 aa13.4□□□□□ -0.26
USP54-209ENST00000464635 PTGS1P23219 599 aa13.4□□□□□ -0.26
USP54-209ENST00000464635 MRE11P49959 708 aa13.4□□□□□ -0.26
USP54-209ENST00000464635 TOB1P50616 345 aaPredicted RBP13.4□□□□□ -0.26
USP54-209ENST00000464635 TLE2Q04725 743 aa13.4□□□□□ -0.26
USP54-209ENST00000464635 SF3A1Q15459 793 aaKnown RBP13.4□□□□□ -0.26
USP54-209ENST00000464635 CCDC144BQ3MJ40 725 aa13.4□□□□□ -0.26
USP54-209ENST00000464635 LRIT3Q3SXY7 679 aa13.4□□□□□ -0.26
USP54-209ENST00000464635 AXDND1Q5T1B0 1012 aaPredicted RBP13.4□□□□□ -0.26
USP54-209ENST00000464635 SYDE2Q5VT97 1194 aa13.4□□□□□ -0.26
USP54-209ENST00000464635 ARL6IP4Q66PJ3 421 aaKnown RBP13.4□□□□□ -0.26
USP54-209ENST00000464635 RNF180Q86T96 592 aa13.4□□□□□ -0.26
USP54-209ENST00000464635 KLHDC9Q8NEP7 349 aa13.4□□□□□ -0.26
USP54-209ENST00000464635 TIGD1Q96MW7 591 aa13.4□□□□□ -0.26
USP54-209ENST00000464635 LBHD1Q9BQE6 289 aaPredicted RBP13.4□□□□□ -0.26
USP54-209ENST00000464635 RANBP17Q9H2T7 1088 aaKnown RBP13.4□□□□□ -0.26
USP54-209ENST00000464635 PNMA2Q9UL42 364 aa13.4□□□□□ -0.26
USP54-209ENST00000464635 CCPG1Q9ULG6 757 aa13.4□□□□□ -0.26
USP54-209ENST00000464635 PCDHA7Q9UN72 937 aa13.4□□□□□ -0.26
USP54-209ENST00000464635 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.39□□□□□ -0.27
USP54-209ENST00000464635 TRIM43BA6NCK2 446 aa13.39□□□□□ -0.27
USP54-209ENST00000464635 GOLGA6L3A6NEY3 463 aa13.39□□□□□ -0.27
USP54-209ENST00000464635 ZBTB5O15062 677 aa13.39□□□□□ -0.27
USP54-209ENST00000464635 DUSP11O75319 330 aaKnown RBP13.39□□□□□ -0.27
USP54-209ENST00000464635 CAVIN2O95810 425 aa13.39□□□□□ -0.27
USP54-209ENST00000464635 ICAM1P05362 532 aa13.39□□□□□ -0.27
USP54-209ENST00000464635 ITGB8P26012 769 aa13.39□□□□□ -0.27
USP54-209ENST00000464635 FAM160A1Q05DH4 1040 aa13.39□□□□□ -0.27
USP54-209ENST00000464635 TKFCQ3LXA3 575 aa13.39□□□□□ -0.27
USP54-209ENST00000464635 C1orf53Q5VUE5 145 aa13.39□□□□□ -0.27
USP54-209ENST00000464635 WWC2Q6AWC2 1192 aa13.39□□□□□ -0.27
USP54-209ENST00000464635 CCSAPQ6IQ19 270 aaPredicted RBP13.39□□□□□ -0.27
USP54-209ENST00000464635 NSMFQ6X4W1 530 aa13.39□□□□□ -0.27
USP54-209ENST00000464635 Q7L0L9 218 aa13.39□□□□□ -0.27
USP54-209ENST00000464635 KRT25Q7Z3Z0 450 aa13.39□□□□□ -0.27
USP54-209ENST00000464635 ENGASEQ8NFI3 743 aa13.39□□□□□ -0.27
USP54-209ENST00000464635 TRIM43Q96BQ3 446 aaPredicted RBP13.39□□□□□ -0.27
USP54-209ENST00000464635 ABHD16BQ9H3Z7 469 aa13.39□□□□□ -0.27
USP54-209ENST00000464635 JMJD4Q9H9V9 463 aa13.39□□□□□ -0.27
USP54-209ENST00000464635 PRKAG2Q9UGJ0 569 aa13.39□□□□□ -0.27
USP54-209ENST00000464635 SRPRBQ9Y5M8 271 aaKnown RBP13.39□□□□□ -0.27
USP54-209ENST00000464635 CLIC4Q9Y696 253 aa13.39□□□□□ -0.27
USP54-209ENST00000464635 LAMA2P24043 3122 aaKnown RBP13.38□□□□□ -0.27
USP54-209ENST00000464635 NFIBO00712 420 aa13.38□□□□□ -0.27
USP54-209ENST00000464635 PQBP1O60828 265 aaKnown RBP13.38□□□□□ -0.27
USP54-209ENST00000464635 ME1P48163 572 aa13.38□□□□□ -0.27
USP54-209ENST00000464635 ACLYP53396 1101 aa13.38□□□□□ -0.27
USP54-209ENST00000464635 KCNA10Q16322 511 aa13.38□□□□□ -0.27
USP54-209ENST00000464635 CCDC73Q6ZRK6 1079 aa13.38□□□□□ -0.27
USP54-209ENST00000464635 ADGRF4Q8IZF3 695 aa13.38□□□□□ -0.27
USP54-209ENST00000464635 KRI1Q8N9T8 703 aaKnown RBP13.38□□□□□ -0.27
USP54-209ENST00000464635 MRPS27Q92552 414 aaKnown RBP13.38□□□□□ -0.27
USP54-209ENST00000464635 BADQ92934 168 aa13.38□□□□□ -0.27
USP54-209ENST00000464635 PYM1Q9BRP8 204 aaKnown RBP13.38□□□□□ -0.27
USP54-209ENST00000464635 MAF1Q9H063 256 aa13.38□□□□□ -0.27
USP54-209ENST00000464635 UPF3AQ9H1J1 476 aaKnown RBP13.38□□□□□ -0.27
USP54-209ENST00000464635 CPVLQ9H3G5 476 aa13.38□□□□□ -0.27
USP54-209ENST00000464635 CYP39A1Q9NYL5 469 aa13.38□□□□□ -0.27
USP54-209ENST00000464635 CLTBP09497 229 aa13.37□□□□□ -0.27
USP54-209ENST00000464635 C6orf222P0C671 652 aaPredicted RBP13.37□□□□□ -0.27
USP54-209ENST00000464635 CST5P28325 142 aaPredicted RBP13.37□□□□□ -0.27
USP54-209ENST00000464635 MRPL12P52815 198 aaKnown RBP13.37□□□□□ -0.27
USP54-209ENST00000464635 FOSBP53539 338 aa13.37□□□□□ -0.27
USP54-209ENST00000464635 NR5A1Q13285 461 aa13.37□□□□□ -0.27
USP54-209ENST00000464635 SNW1Q13573 536 aaKnown RBP13.37□□□□□ -0.27
USP54-209ENST00000464635 C9orf50Q5SZB4 431 aa13.37□□□□□ -0.27
USP54-209ENST00000464635 TMEM63BQ5T3F8 832 aa13.37□□□□□ -0.27
USP54-209ENST00000464635 FBXO16Q8IX29 292 aaPredicted RBP13.37□□□□□ -0.27
USP54-209ENST00000464635 SAMD3Q8N6K7 520 aa13.37□□□□□ -0.27
USP54-209ENST00000464635 OXER1Q8TDS5 423 aa13.37□□□□□ -0.27
USP54-209ENST00000464635 PIGSQ96S52 555 aa13.37□□□□□ -0.27
USP54-209ENST00000464635 NAP1L4Q99733 375 aaKnown RBP13.37□□□□□ -0.27
USP54-209ENST00000464635 TSEN34Q9BSV6 310 aaKnown RBP13.37□□□□□ -0.27
USP54-209ENST00000464635 CLSTN2Q9H4D0 955 aa13.37□□□□□ -0.27
USP54-209ENST00000464635 STARD7Q9NQZ5 370 aa13.37□□□□□ -0.27
USP54-209ENST00000464635 PDGFCQ9NRA1 345 aa13.37□□□□□ -0.27
USP54-209ENST00000464635 SMCO2A6NFE2 343 aa13.36□□□□□ -0.27
USP54-209ENST00000464635 ASGR1P07306 291 aa13.36□□□□□ -0.27
USP54-209ENST00000464635 GOLGA8HP0CJ92 632 aa13.36□□□□□ -0.27
USP54-209ENST00000464635 NAPAP54920 295 aa13.36□□□□□ -0.27
USP54-209ENST00000464635 GJA9P57773 515 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms