RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 KAT2BQ92831 832 aa24.41■■□□□ 1.5
HMGB3-205ENST00000455596 GPKOWQ92917 476 aaPredicted RBP eCLIP24.41■■□□□ 1.5
HMGB3-205ENST00000455596 SPATA33Q96N06 139 aa24.41■■□□□ 1.5
HMGB3-205ENST00000455596 INPP4AQ96PE3 977 aaPredicted RBP24.41■■□□□ 1.5
HMGB3-205ENST00000455596 WNT8AQ9H1J5 351 aa24.41■■□□□ 1.5
HMGB3-205ENST00000455596 MLXIPQ9HAP2 919 aa24.41■■□□□ 1.5
HMGB3-205ENST00000455596 GBF1Q92538 1859 aa24.41■■□□□ 1.5
HMGB3-205ENST00000455596 SORBS3O60504 671 aa24.4■■□□□ 1.5
HMGB3-205ENST00000455596 PSMA5P28066 241 aa24.4■■□□□ 1.5
HMGB3-205ENST00000455596 ICAM3P32942 547 aa24.4■■□□□ 1.5
HMGB3-205ENST00000455596 ZNF365Q70YC5 407 aa24.4■■□□□ 1.5
HMGB3-205ENST00000455596 SESTD1Q86VW0 696 aa24.4■■□□□ 1.5
HMGB3-205ENST00000455596 MTMR10Q9NXD2 777 aa24.4■■□□□ 1.5
HMGB3-205ENST00000455596 RTEL1Q9NZ71 1219 aa24.4■■□□□ 1.5
HMGB3-205ENST00000455596 NOD1Q9Y239 953 aa24.4■■□□□ 1.5
HMGB3-205ENST00000455596 FIBPO43427 364 aa24.39■■□□□ 1.49
HMGB3-205ENST00000455596 CDC27P30260 824 aa24.39■■□□□ 1.49
HMGB3-205ENST00000455596 APOBRQ0VD83 1088 aa24.39■■□□□ 1.49
HMGB3-205ENST00000455596 HSDL1Q3SXM5 330 aa24.39■■□□□ 1.49
HMGB3-205ENST00000455596 ZNF697Q5TEC3 545 aa24.39■■□□□ 1.49
HMGB3-205ENST00000455596 BRF1Q92994 677 aa24.39■■□□□ 1.49
HMGB3-205ENST00000455596 HSFX4A0A1B0GTS1 333 aaPredicted RBP24.38■■□□□ 1.49
HMGB3-205ENST00000455596 HSFX3A0A1B0GWH4 333 aaPredicted RBP24.38■■□□□ 1.49
HMGB3-205ENST00000455596 SPDYE3A6NKU9 549 aa24.38■■□□□ 1.49
HMGB3-205ENST00000455596 SPATA31C2B4DYI2 1134 aa24.38■■□□□ 1.49
HMGB3-205ENST00000455596 PPFIA4O75335 1185 aa24.38■■□□□ 1.49
HMGB3-205ENST00000455596 F2P00734 622 aa24.38■■□□□ 1.49
HMGB3-205ENST00000455596 CENPBP07199 599 aaPredicted RBP24.38■■□□□ 1.49
HMGB3-205ENST00000455596 ZNF286BP0CG31 522 aa24.38■■□□□ 1.49
HMGB3-205ENST00000455596 HOXD8P13378 290 aaPredicted RBP24.38■■□□□ 1.49
HMGB3-205ENST00000455596 RPS6KB1P23443 525 aa24.38■■□□□ 1.49
HMGB3-205ENST00000455596 PSEN2P49810 448 aa24.38■■□□□ 1.49
HMGB3-205ENST00000455596 METAP2P50579 478 aaKnown RBP eCLIP24.38■■□□□ 1.49
HMGB3-205ENST00000455596 FUT2Q10981 343 aa24.38■■□□□ 1.49
HMGB3-205ENST00000455596 NEDD9Q14511 834 aa24.38■■□□□ 1.49
HMGB3-205ENST00000455596 MFSD10Q14728 455 aa24.38■■□□□ 1.49
HMGB3-205ENST00000455596 PTGISQ16647 500 aa24.38■■□□□ 1.49
HMGB3-205ENST00000455596 UBE2SQ16763 222 aa24.38■■□□□ 1.49
HMGB3-205ENST00000455596 WWC2Q6AWC2 1192 aa24.38■■□□□ 1.49
HMGB3-205ENST00000455596 RPUSD2Q8IZ73 545 aaKnown RBP24.38■■□□□ 1.49
HMGB3-205ENST00000455596 SCLYQ96I15 445 aa24.38■■□□□ 1.49
HMGB3-205ENST00000455596 ALG1Q9BT22 464 aa24.38■■□□□ 1.49
HMGB3-205ENST00000455596 FAM217BQ9NTX9 383 aaPredicted RBP24.38■■□□□ 1.49
HMGB3-205ENST00000455596 V9GY48 417 aaPredicted RBP24.38■■□□□ 1.49
HMGB3-205ENST00000455596 CCDC196A0A1B0GTZ2 297 aa24.37■■□□□ 1.49
HMGB3-205ENST00000455596 hCG_1984214I3L0E3 225 aa24.37■■□□□ 1.49
HMGB3-205ENST00000455596 FGBP02675 491 aa24.37■■□□□ 1.49
HMGB3-205ENST00000455596 NAPAP54920 295 aa24.37■■□□□ 1.49
HMGB3-205ENST00000455596 PPP1R18Q6NYC8 613 aa24.37■■□□□ 1.49
HMGB3-205ENST00000455596 NLRX1Q86UT6 975 aa24.37■■□□□ 1.49
HMGB3-205ENST00000455596 FBXL16Q8N461 479 aa24.37■■□□□ 1.49
HMGB3-205ENST00000455596 ZNF713Q8N859 430 aaPredicted RBP24.37■■□□□ 1.49
HMGB3-205ENST00000455596 C7orf31Q8N865 590 aa24.37■■□□□ 1.49
HMGB3-205ENST00000455596 MTIF3Q9H2K0 278 aaKnown RBP24.37■■□□□ 1.49
HMGB3-205ENST00000455596 HAS3O00219 553 aa24.36■■□□□ 1.49
HMGB3-205ENST00000455596 PITPNM1O00562 1244 aa24.36■■□□□ 1.49
HMGB3-205ENST00000455596 SEMA3FQ13275 785 aa24.36■■□□□ 1.49
HMGB3-205ENST00000455596 KIAA0753Q2KHM9 967 aa24.36■■□□□ 1.49
HMGB3-205ENST00000455596 RASIP1Q5U651 963 aa24.36■■□□□ 1.49
HMGB3-205ENST00000455596 GDF6Q6KF10 455 aaPredicted RBP24.36■■□□□ 1.49
HMGB3-205ENST00000455596 RETREG2Q8NC44 543 aa24.36■■□□□ 1.49
HMGB3-205ENST00000455596 HERVK_113Q902F9 699 aa24.36■■□□□ 1.49
HMGB3-205ENST00000455596 AGXT2Q9BYV1 514 aa24.36■■□□□ 1.49
HMGB3-205ENST00000455596 EHMT1Q9H9B1 1298 aa24.36■■□□□ 1.49
HMGB3-205ENST00000455596 HDAC6Q9UBN7 1215 aa24.36■■□□□ 1.49
HMGB3-205ENST00000455596 GTF2IRD1Q9UHL9 959 aa24.36■■□□□ 1.49
HMGB3-205ENST00000455596 PCDHA6Q9UN73 950 aa24.36■■□□□ 1.49
HMGB3-205ENST00000455596 PCDHA8Q9Y5H6 950 aa24.36■■□□□ 1.49
HMGB3-205ENST00000455596 KAT6AQ92794 2004 aa24.35■■□□□ 1.49
HMGB3-205ENST00000455596 NID2Q14112 1375 aa24.35■■□□□ 1.49
HMGB3-205ENST00000455596 NOP56O00567 594 aaKnown RBP24.35■■□□□ 1.49
HMGB3-205ENST00000455596 BFSP2Q13515 415 aa24.35■■□□□ 1.49
HMGB3-205ENST00000455596 METTL7BQ6UX53 244 aa24.35■■□□□ 1.49
HMGB3-205ENST00000455596 TEX2Q8IWB9 1127 aa24.35■■□□□ 1.49
HMGB3-205ENST00000455596 CCDC155Q8N6L0 562 aa24.35■■□□□ 1.49
HMGB3-205ENST00000455596 FAM161BQ96MY7 647 aa24.35■■□□□ 1.49
HMGB3-205ENST00000455596 RIC8AQ9NPQ8 531 aa24.35■■□□□ 1.49
HMGB3-205ENST00000455596 PFKMP08237 780 aa24.34■■□□□ 1.49
HMGB3-205ENST00000455596 ADD1P35611 737 aaKnown RBP24.34■■□□□ 1.49
HMGB3-205ENST00000455596 CYFIP1Q7L576 1253 aa24.34■■□□□ 1.49
HMGB3-205ENST00000455596 GPRASP2Q96D09 838 aa24.34■■□□□ 1.49
HMGB3-205ENST00000455596 SENP7Q9BQF6 1050 aa24.34■■□□□ 1.49
HMGB3-205ENST00000455596 USP26Q9BXU7 913 aa24.34■■□□□ 1.49
HMGB3-205ENST00000455596 BCAS3Q9H6U6 928 aa24.34■■□□□ 1.49
HMGB3-205ENST00000455596 BARHL2Q9NY43 387 aa24.34■■□□□ 1.49
HMGB3-205ENST00000455596 STXBP3O00186 592 aa24.33■■□□□ 1.49
HMGB3-205ENST00000455596 RFC2P35250 354 aa24.33■■□□□ 1.49
HMGB3-205ENST00000455596 ADCY7P51828 1080 aa24.33■■□□□ 1.49
HMGB3-205ENST00000455596 TYW1BQ6NUM6 668 aa24.33■■□□□ 1.49
HMGB3-205ENST00000455596 RUFY3Q7L099 469 aa24.33■■□□□ 1.49
HMGB3-205ENST00000455596 OTOP2Q7RTS6 562 aa24.33■■□□□ 1.49
HMGB3-205ENST00000455596 GIMAP8Q8ND71 665 aaPredicted RBP24.33■■□□□ 1.49
HMGB3-205ENST00000455596 CAGE1Q8TC20 777 aa24.33■■□□□ 1.49
HMGB3-205ENST00000455596 CDHR1Q96JP9 859 aa24.33■■□□□ 1.49
HMGB3-205ENST00000455596 C16orf70Q9BSU1 422 aa24.33■■□□□ 1.49
HMGB3-205ENST00000455596 SMCO2A6NFE2 343 aa24.32■■□□□ 1.48
HMGB3-205ENST00000455596 IQCF3P0C7M6 154 aa24.32■■□□□ 1.48
HMGB3-205ENST00000455596 DEFB128Q7Z7B8 93 aa24.32■■□□□ 1.48
HMGB3-205ENST00000455596 CTAGE1Q96RT6 745 aa24.32■■□□□ 1.48
HMGB3-205ENST00000455596 GLT8D2Q9H1C3 349 aa24.32■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms