RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 LCA5Q86VQ0 697 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 C12orf40Q86WS4 652 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 SYTL1Q8IYJ3 562 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 OR2C3Q8N628 320 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 DIS3LQ8TF46 1054 aaKnown RBP2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 USP13Q92995 863 aaPredicted RBP2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 TBC1D20Q96BZ9 403 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 TSEN34Q9BSV6 310 aaKnown RBP2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 KLHL25Q9H0H3 589 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 FBXO10Q9UK96 956 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 RB1CC1Q8TDY2 1594 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 H7C1D1 291 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 CD4P01730 458 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 NCAM1P13591 858 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 PRIM2P49643 509 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 LAMC2Q13753 1193 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 TJAP1Q5JTD0 557 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 C1orf122Q6ZSJ8 110 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 CDC37L1Q7L3B6 337 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 DPP9Q86TI2 863 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 CISD2Q8N5K1 135 aaKnown RBP2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 KIAA1958Q8N8K9 716 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 ANKLE1Q8NAG6 615 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 DCAF4Q8WV16 495 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 KIAA1191Q96A73 305 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 KIFC2Q96AC6 838 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 TMEM169Q96HH4 297 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 SNX27Q96L92 541 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 MRGPRX2Q96LB1 330 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 CCDC140Q96MF4 163 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 GTPBP4Q9BZE4 634 aaKnown RBP2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 PCIF1Q9H4Z3 704 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 RSAD1Q9HA92 442 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 PGAP2Q9UHJ9 254 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 GSTA4O15217 222 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 DNAJA2O60884 412 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 HMMRO75330 724 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 ATP6V1E1P36543 226 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 ZNF252P-AS1Q0IIN9 211 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 SPEM2Q0P670 501 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 MAP4K2Q12851 820 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 TAF5Q15542 800 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 DPY19L1Q2PZI1 675 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 GLIPR1L2Q4G1C9 344 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 FAM209BQ5JX69 171 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 LILRA6Q6PI73 481 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 FIGNL1Q6PIW4 674 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 DAAM2Q86T65 1068 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 TBC1D1Q86TI0 1168 aaPredicted RBP2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 PPFIBP1Q86W92 1011 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 SPATA17Q96L03 361 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 ZDHHC15Q96MV8 337 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 POP1Q99575 1024 aaKnown RBP2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 FAM167BQ9BTA0 163 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 RETREG1Q9H6L5 497 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 PRKRIP1Q9H875 184 aaPredicted RBP2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 ARHGAP28Q9P2N2 729 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 KCNG1Q9UIX4 513 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 SIK3Q9Y2K2 1263 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 PCDHGB2Q9Y5G2 931 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 PRR36Q9H6K5 1346 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 FSD2A1L4K1 749 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 CAPN8A6NHC0 703 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 SPATA31C2B4DYI2 1134 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 ATXN7O15265 892 aaPredicted RBP2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 CSTBP04080 98 aaKnown RBP2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 CYP11A1P05108 521 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 ATP2A2P16615 1042 aaKnown RBP2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 RAD52P43351 418 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 STT3AP46977 705 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 AMPD2Q01433 879 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 NBPF12Q5TAG4 269 aaPredicted RBP2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 GTF2IRD2BQ6EKJ0 949 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 FAM117BQ6P1L5 589 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 KCNT2Q6UVM3 1135 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 FASTKD5Q7L8L6 764 aaKnown RBP2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 GTF2IRD2Q86UP8 949 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 LIX1LQ8IVB5 337 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 TRIM59Q8IWR1 403 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 TEX11Q8IYF3 940 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 COLGALT2Q8IYK4 626 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 LRTOMTQ8WZ04 291 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 VMP1Q96GC9 406 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 FMNL2Q96PY5 1086 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 DSCC1Q9BVC3 393 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 PHF20Q9BVI0 1012 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 B3GNT5Q9BYG0 378 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 NOL6Q9H6R4 1146 aaKnown RBP2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 CATSPERZQ9NTU4 200 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 PTPN22Q9Y2R2 807 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 GPR52Q9Y2T5 361 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 PCDHA11Q9Y5I1 949 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 SNX5Q9Y5X3 404 aa2.7□□□□□ -1.98
CCDC88A-208ENST00000444458 ZBED4O75132 1171 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 PPFIA3O75145 1194 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 SKAP2O75563 359 aaPredicted RBP2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 SLC3A2P08195 630 aaKnown RBP2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 BMP2P12643 396 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 OSMP13725 252 aa2.69□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms