RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 STAG1Q8WVM7 1258 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 MTRQ99707 1265 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 GDAQ9Y2T3 454 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 DAGLAQ9Y4D2 1042 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 PATL2C9JE40 543 aaKnown RBP9.49□□□□□ -0.89
HPS4-206ENST00000439453 CLGNO14967 610 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 ATP1A2P50993 1020 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 SPDYE2Q495Y8 402 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 MFSD6Q6ZSS7 791 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 NSUN4Q96CB9 384 aaKnown RBP9.49□□□□□ -0.89
HPS4-206ENST00000439453 ZNHIT6Q9NWK9 470 aaKnown RBP9.49□□□□□ -0.89
HPS4-206ENST00000439453 RMND1Q9NWS8 449 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 TCRBV5S4A2TA0A5A2 114 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 TRIM49BA6NDI0 452 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 ZEB2O60315 1214 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 NAP1L1P55209 391 aaKnown RBP9.49□□□□□ -0.89
HPS4-206ENST00000439453 KIF5AQ12840 1032 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 CDAN1Q8IWY9 1227 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 CCDC170Q8IYT3 715 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 SH2D3CQ8N5H7 860 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 SPATA4Q8NEY3 305 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 CAVIN3Q969G5 261 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 PTPRFP10586 1907 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 ERICH2A1L162 156 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 RPN1P04843 607 aaKnown RBP9.48□□□□□ -0.89
HPS4-206ENST00000439453 UQCRFS1P1P0C7P4 283 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 HSPA6P17066 643 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 XBP1P17861 261 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 MATR3P43243 847 aaKnown RBP eCLIP9.48□□□□□ -0.89
HPS4-206ENST00000439453 CYP27A1Q02318 531 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 MECOMQ03112 1051 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 NNTQ13423 1086 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 KCTD16Q68DU8 428 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 HHIPL2Q6UWX4 724 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 ZIM3Q96PE6 472 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 TACO1Q9BSH4 297 aaKnown RBP9.48□□□□□ -0.89
HPS4-206ENST00000439453 PAGR1Q9BTK6 254 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 CD248Q9HCU0 757 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 AGPAT5Q9NUQ2 364 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 CHUKO15111 745 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 LSP1P33241 339 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 RDXP35241 583 aaKnown RBP9.48□□□□□ -0.89
HPS4-206ENST00000439453 VAV2P52735 878 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 NAA35Q5VZE5 725 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 KDM7AQ6ZMT4 941 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 YTHDF3Q7Z739 585 aaKnown RBP9.48□□□□□ -0.89
HPS4-206ENST00000439453 ZNF654Q8IZM8 581 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 GIMAP7Q8NHV1 300 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 ZKSCAN4Q969J2 545 aaPredicted RBP9.48□□□□□ -0.89
HPS4-206ENST00000439453 PHF20Q9BVI0 1012 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 RNF26Q9BY78 433 aaPredicted RBP9.48□□□□□ -0.89
HPS4-206ENST00000439453 TSGA10Q9BZW7 698 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 EPN3Q9H201 632 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 STIM2Q9P246 746 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 DOCK1Q14185 1865 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 EEF1GP26641 437 aaKnown RBP9.48□□□□□ -0.89
HPS4-206ENST00000439453 DNM2P50570 870 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 PTGDRQ13258 359 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 TTC38Q5R3I4 469 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 HAUS3Q68CZ6 603 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 TMTC2Q8N394 836 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 TRIM58Q8NG06 486 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 SMCR8Q8TEV9 937 aaPredicted RBP9.48□□□□□ -0.89
HPS4-206ENST00000439453 FAM163AQ96GL9 167 aaPredicted RBP9.48□□□□□ -0.89
HPS4-206ENST00000439453 RNPC3Q96LT9 517 aaKnown RBP9.48□□□□□ -0.89
HPS4-206ENST00000439453 TEPSINQ96N21 525 aa9.48□□□□□ -0.89
HPS4-206ENST00000439453 TACC1O75410 805 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 ATP2C1P98194 919 aaPredicted RBP9.47□□□□□ -0.89
HPS4-206ENST00000439453 DNAJC5GQ8N7S2 189 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 PYM1Q9BRP8 204 aaKnown RBP9.47□□□□□ -0.89
HPS4-206ENST00000439453 TTYH3Q9C0H2 523 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 LRWD1Q9UFC0 647 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 ATRNL1Q5VV63 1379 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 PRDM1O75626 825 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 PRLRP16471 622 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 TRIM21P19474 475 aaKnown RBP9.47□□□□□ -0.89
HPS4-206ENST00000439453 TNFRSF8P28908 595 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 APLP1P51693 650 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 RCAN1P53805 252 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 RHBDL3P58872 404 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 PKN1Q16512 942 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 RNF187Q5TA31 235 aaPredicted RBP9.47□□□□□ -0.89
HPS4-206ENST00000439453 ADSSL1Q8N142 457 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 OGFOD1Q8N543 542 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 ZNF473Q8WTR7 871 aaKnown RBP9.47□□□□□ -0.89
HPS4-206ENST00000439453 NUP58Q9BVL2 599 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 THAP9Q9H5L6 903 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 TDRD3Q9H7E2 651 aaKnown RBP9.47□□□□□ -0.89
HPS4-206ENST00000439453 VCPKMTQ9H867 229 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 MAGEC2Q9UBF1 373 aaPredicted RBP9.47□□□□□ -0.89
HPS4-206ENST00000439453 ZNF70Q9UC06 446 aaPredicted RBP9.47□□□□□ -0.89
HPS4-206ENST00000439453 MYH10P35580 1976 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 RASSF10A6NK89 507 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 B4DLN1 442 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 MBD4O95243 580 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 LDHBP07195 334 aaKnown RBP9.47□□□□□ -0.89
HPS4-206ENST00000439453 PMS1P54277 932 aaKnown RBP9.47□□□□□ -0.89
HPS4-206ENST00000439453 ZBED6P86452 979 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 GUCY1A3Q02108 690 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 ACTN3Q08043 901 aaPredicted RBP9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms