RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 MAGEF1Q9HAY2 307 aa18.68■□□□□ 0.58
PTPRF-209ENST00000438120 GOLGA8IPA6NC78 632 aa18.68■□□□□ 0.58
PTPRF-209ENST00000438120 GOLGA8JA6NMD2 632 aa18.68■□□□□ 0.58
PTPRF-209ENST00000438120 RETREG2Q8NC44 543 aa18.68■□□□□ 0.58
PTPRF-209ENST00000438120 PRPF31Q8WWY3 499 aaKnown RBP18.68■□□□□ 0.58
PTPRF-209ENST00000438120 EIF2AK2P19525 551 aaKnown RBP18.68■□□□□ 0.58
PTPRF-209ENST00000438120 RAPH1Q70E73 1250 aa18.68■□□□□ 0.58
PTPRF-209ENST00000438120 RYBPQ8N488 228 aaPredicted RBP18.68■□□□□ 0.58
PTPRF-209ENST00000438120 LINC00301Q8NCQ3 95 aa18.68■□□□□ 0.58
PTPRF-209ENST00000438120 DHTKD1Q96HY7 919 aaPredicted RBP18.68■□□□□ 0.58
PTPRF-209ENST00000438120 SNX25Q9H3E2 840 aa18.68■□□□□ 0.58
PTPRF-209ENST00000438120 ABCC12Q96J65 1359 aa18.68■□□□□ 0.58
PTPRF-209ENST00000438120 ESYT2A0FGR8 921 aa18.67■□□□□ 0.58
PTPRF-209ENST00000438120 CDC37Q16543 378 aaPredicted RBP18.67■□□□□ 0.58
PTPRF-209ENST00000438120 SCARA5Q6ZMJ2 495 aa18.67■□□□□ 0.58
PTPRF-209ENST00000438120 KRT27Q7Z3Y8 459 aa18.67■□□□□ 0.58
PTPRF-209ENST00000438120 MAP7D3Q8IWC1 876 aa18.67■□□□□ 0.58
PTPRF-209ENST00000438120 WDR46O15213 610 aaKnown RBP18.67■□□□□ 0.58
PTPRF-209ENST00000438120 MOCS3O95396 460 aa18.67■□□□□ 0.58
PTPRF-209ENST00000438120 PDE1BQ01064 536 aa18.67■□□□□ 0.58
PTPRF-209ENST00000438120 CCDC38Q502W7 563 aa18.67■□□□□ 0.58
PTPRF-209ENST00000438120 AK8Q96MA6 479 aa18.67■□□□□ 0.58
PTPRF-209ENST00000438120 CUEDC2Q9H467 287 aa18.67■□□□□ 0.58
PTPRF-209ENST00000438120 GCNT4Q9P109 453 aa18.67■□□□□ 0.58
PTPRF-209ENST00000438120 C2orf54Q08AI8 447 aa18.67■□□□□ 0.58
PTPRF-209ENST00000438120 PPP2R5EQ16537 467 aa18.67■□□□□ 0.58
PTPRF-209ENST00000438120 NACC1Q96RE7 527 aa18.67■□□□□ 0.58
PTPRF-209ENST00000438120 SFI1A8K8P3 1242 aa18.67■□□□□ 0.58
PTPRF-209ENST00000438120 ACTN1P12814 892 aa18.67■□□□□ 0.58
PTPRF-209ENST00000438120 GAP43P17677 238 aa18.67■□□□□ 0.58
PTPRF-209ENST00000438120 PLCG1P19174 1290 aa18.67■□□□□ 0.58
PTPRF-209ENST00000438120 RNASELQ05823 741 aaKnown RBP18.67■□□□□ 0.58
PTPRF-209ENST00000438120 TRIM68Q6AZZ1 485 aa18.67■□□□□ 0.58
PTPRF-209ENST00000438120 BCAS4Q8TDM0 211 aa18.67■□□□□ 0.58
PTPRF-209ENST00000438120 PNMA2Q9UL42 364 aa18.67■□□□□ 0.58
PTPRF-209ENST00000438120 PSDA5PKW4 1024 aaPredicted RBP18.67■□□□□ 0.58
PTPRF-209ENST00000438120 SOWAHDA6NJG2 315 aa18.67■□□□□ 0.58
PTPRF-209ENST00000438120 RASSF2P50749 326 aa18.67■□□□□ 0.58
PTPRF-209ENST00000438120 SASH1O94885 1247 aa18.66■□□□□ 0.58
PTPRF-209ENST00000438120 PLEKHA8P1O95397 391 aa18.66■□□□□ 0.58
PTPRF-209ENST00000438120 BPIFB4P59827 614 aa18.66■□□□□ 0.58
PTPRF-209ENST00000438120 RIPOR2Q9Y4F9 1068 aa18.66■□□□□ 0.58
PTPRF-209ENST00000438120 ROBO2Q9HCK4 1378 aa18.66■□□□□ 0.58
PTPRF-209ENST00000438120 RXRBP28702 533 aa18.66■□□□□ 0.58
PTPRF-209ENST00000438120 JADE1Q6IE81 842 aa18.66■□□□□ 0.58
PTPRF-209ENST00000438120 WDR11Q9BZH6 1224 aa18.66■□□□□ 0.58
PTPRF-209ENST00000438120 OSBPL3Q9H4L5 887 aa18.66■□□□□ 0.58
PTPRF-209ENST00000438120 SRGAP2CP0DJJ0 459 aa18.66■□□□□ 0.58
PTPRF-209ENST00000438120 TRIP13Q15645 432 aaPredicted RBP18.66■□□□□ 0.58
PTPRF-209ENST00000438120 MYLK4Q86YV6 388 aaPredicted RBP18.66■□□□□ 0.58
PTPRF-209ENST00000438120 AATKQ6ZMQ8 1374 aa18.66■□□□□ 0.58
PTPRF-209ENST00000438120 CDK8P49336 464 aa18.66■□□□□ 0.58
PTPRF-209ENST00000438120 CYP4F22Q6NT55 531 aa18.66■□□□□ 0.58
PTPRF-209ENST00000438120 TRIM56Q9BRZ2 755 aaKnown RBP18.66■□□□□ 0.58
PTPRF-209ENST00000438120 EMILIN3Q9NT22 766 aa18.66■□□□□ 0.58
PTPRF-209ENST00000438120 SPTLC3Q9NUV7 552 aa18.66■□□□□ 0.58
PTPRF-209ENST00000438120 PI4KBQ9UBF8 816 aa18.66■□□□□ 0.58
PTPRF-209ENST00000438120 ADD3Q9UEY8 706 aaKnown RBP18.66■□□□□ 0.58
PTPRF-209ENST00000438120 ABCA5Q8WWZ7 1642 aa18.66■□□□□ 0.58
PTPRF-209ENST00000438120 SNAP23O00161 211 aa18.66■□□□□ 0.58
PTPRF-209ENST00000438120 SUPT20HL1Q3ZLR7 823 aa18.66■□□□□ 0.58
PTPRF-209ENST00000438120 KIF9Q9HAQ2 790 aa18.66■□□□□ 0.58
PTPRF-209ENST00000438120 EPB41L5Q9HCM4 733 aa18.66■□□□□ 0.58
PTPRF-209ENST00000438120 EEF1GP26641 437 aaKnown RBP18.65■□□□□ 0.58
PTPRF-209ENST00000438120 MAN2A1Q16706 1144 aa18.65■□□□□ 0.58
PTPRF-209ENST00000438120 INHBAP08476 426 aa18.65■□□□□ 0.58
PTPRF-209ENST00000438120 PRPSAP1Q14558 356 aa18.65■□□□□ 0.58
PTPRF-209ENST00000438120 HLFQ16534 295 aa18.65■□□□□ 0.58
PTPRF-209ENST00000438120 MUM1Q2TAK8 710 aa18.65■□□□□ 0.58
PTPRF-209ENST00000438120 SLC38A10Q9HBR0 1119 aa18.65■□□□□ 0.58
PTPRF-209ENST00000438120 ERBB3P21860 1342 aa18.65■□□□□ 0.58
PTPRF-209ENST00000438120 KRT1P04264 644 aa18.65■□□□□ 0.58
PTPRF-209ENST00000438120 SLFN14P0C7P3 912 aa18.65■□□□□ 0.58
PTPRF-209ENST00000438120 CASP2P42575 452 aa18.65■□□□□ 0.58
PTPRF-209ENST00000438120 PLTPP55058 493 aa18.65■□□□□ 0.58
PTPRF-209ENST00000438120 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.65■□□□□ 0.58
PTPRF-209ENST00000438120 LRRC8CQ8TDW0 803 aa18.65■□□□□ 0.58
PTPRF-209ENST00000438120 GJB4Q9NTQ9 266 aa18.65■□□□□ 0.58
PTPRF-209ENST00000438120 HEG1Q9ULI3 1381 aa18.65■□□□□ 0.58
PTPRF-209ENST00000438120 PLA2G4BP0C869 781 aa18.65■□□□□ 0.58
PTPRF-209ENST00000438120 MUM1L1Q5H9M0 696 aa18.65■□□□□ 0.58
PTPRF-209ENST00000438120 TDRD7Q8NHU6 1098 aaKnown RBP18.65■□□□□ 0.58
PTPRF-209ENST00000438120 ANAPC5Q9UJX4 755 aa18.65■□□□□ 0.58
PTPRF-209ENST00000438120 MAP7Q14244 749 aa18.65■□□□□ 0.58
PTPRF-209ENST00000438120 CDKL2Q92772 493 aa18.65■□□□□ 0.58
PTPRF-209ENST00000438120 LRFN2Q9ULH4 789 aa18.65■□□□□ 0.58
PTPRF-209ENST00000438120 SGO2Q562F6 1265 aa18.64■□□□□ 0.58
PTPRF-209ENST00000438120 GBP7Q8N8V2 638 aaPredicted RBP18.64■□□□□ 0.58
PTPRF-209ENST00000438120 SAMD9Q5K651 1589 aa18.64■□□□□ 0.58
PTPRF-209ENST00000438120 CYP2D6P10635 497 aa18.64■□□□□ 0.57
PTPRF-209ENST00000438120 FKBP3Q00688 224 aaKnown RBP18.64■□□□□ 0.57
PTPRF-209ENST00000438120 UGGT1Q9NYU2 1555 aa18.64■□□□□ 0.57
PTPRF-209ENST00000438120 GARSP41250 739 aaKnown RBP18.64■□□□□ 0.57
PTPRF-209ENST00000438120 RFC1P35251 1148 aaPredicted RBP18.64■□□□□ 0.57
PTPRF-209ENST00000438120 RSPH3Q86UC2 560 aa18.64■□□□□ 0.57
PTPRF-209ENST00000438120 CFAP61Q8NHU2 1237 aa18.64■□□□□ 0.57
PTPRF-209ENST00000438120 SH3RF3Q8TEJ3 882 aaPredicted RBP18.64■□□□□ 0.57
PTPRF-209ENST00000438120 CALN1Q9BXU9 219 aa18.64■□□□□ 0.57
PTPRF-209ENST00000438120 CDC23Q9UJX2 597 aa18.64■□□□□ 0.57
PTPRF-209ENST00000438120 ATP8A1Q9Y2Q0 1164 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms