RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 TIMP1P01033 207 aa17.42■□□□□ 0.38
LIMS3-201ENST00000437679 CD4P01730 458 aa17.42■□□□□ 0.38
LIMS3-201ENST00000437679 UBA1P22314 1058 aaKnown RBP17.42■□□□□ 0.38
LIMS3-201ENST00000437679 ITGB8P26012 769 aa17.42■□□□□ 0.38
LIMS3-201ENST00000437679 ICAM3P32942 547 aa17.42■□□□□ 0.38
LIMS3-201ENST00000437679 NBPF20Q3BBV1 942 aa17.42■□□□□ 0.38
LIMS3-201ENST00000437679 MYSM1Q5VVJ2 828 aa17.42■□□□□ 0.38
LIMS3-201ENST00000437679 TYW1BQ6NUM6 668 aa17.42■□□□□ 0.38
LIMS3-201ENST00000437679 NLRX1Q86UT6 975 aa17.42■□□□□ 0.38
LIMS3-201ENST00000437679 CCDC12Q8WUD4 166 aaPredicted RBP17.42■□□□□ 0.38
LIMS3-201ENST00000437679 ZNF274Q96GC6 653 aaPredicted RBP17.42■□□□□ 0.38
LIMS3-201ENST00000437679 SPATA33Q96N06 139 aa17.42■□□□□ 0.38
LIMS3-201ENST00000437679 ALDH8A1Q9H2A2 487 aaPredicted RBP17.42■□□□□ 0.38
LIMS3-201ENST00000437679 SPATA31C2B4DYI2 1134 aa17.41■□□□□ 0.38
LIMS3-201ENST00000437679 SORBS3O60504 671 aa17.41■□□□□ 0.38
LIMS3-201ENST00000437679 FOSP01100 380 aaPredicted RBP17.41■□□□□ 0.38
LIMS3-201ENST00000437679 SUPT20HL2P0C7V6 817 aa17.41■□□□□ 0.38
LIMS3-201ENST00000437679 IFNAR1P17181 557 aa17.41■□□□□ 0.38
LIMS3-201ENST00000437679 CHMP4BP1P59074 171 aa17.41■□□□□ 0.38
LIMS3-201ENST00000437679 SP2Q02086 613 aa17.41■□□□□ 0.38
LIMS3-201ENST00000437679 NEDD9Q14511 834 aa17.41■□□□□ 0.38
LIMS3-201ENST00000437679 NTRK3Q16288 839 aa17.41■□□□□ 0.38
LIMS3-201ENST00000437679 NFRKBQ6P4R8 1299 aa17.41■□□□□ 0.38
LIMS3-201ENST00000437679 PHKBQ93100 1093 aa17.41■□□□□ 0.38
LIMS3-201ENST00000437679 SLC26A6Q9BXS9 759 aa17.41■□□□□ 0.38
LIMS3-201ENST00000437679 RNF26Q9BY78 433 aaPredicted RBP17.41■□□□□ 0.38
LIMS3-201ENST00000437679 TRPV6Q9H1D0 765 aa17.41■□□□□ 0.38
LIMS3-201ENST00000437679 NCOA5Q9HCD5 579 aaKnown RBP17.41■□□□□ 0.38
LIMS3-201ENST00000437679 CPLX1O14810 134 aa17.4■□□□□ 0.38
LIMS3-201ENST00000437679 B4GALT4O60513 344 aa17.4■□□□□ 0.38
LIMS3-201ENST00000437679 PPFIA4O75335 1185 aa17.4■□□□□ 0.38
LIMS3-201ENST00000437679 FPGSQ05932 587 aa17.4■□□□□ 0.38
LIMS3-201ENST00000437679 PTPN11Q06124 597 aaPredicted RBP17.4■□□□□ 0.38
LIMS3-201ENST00000437679 CPLX2Q6PUV4 134 aaKnown RBP17.4■□□□□ 0.38
LIMS3-201ENST00000437679 TRIM22Q8IYM9 498 aa17.4■□□□□ 0.38
LIMS3-201ENST00000437679 CDHR1Q96JP9 859 aa17.4■□□□□ 0.38
LIMS3-201ENST00000437679 LARP6Q9BRS8 491 aaKnown RBP17.4■□□□□ 0.38
LIMS3-201ENST00000437679 KATNAL1Q9BW62 490 aa17.4■□□□□ 0.38
LIMS3-201ENST00000437679 PPP1R12CQ9BZL4 782 aa17.4■□□□□ 0.38
LIMS3-201ENST00000437679 NOP56O00567 594 aaKnown RBP17.39■□□□□ 0.37
LIMS3-201ENST00000437679 STK3Q13188 491 aa17.39■□□□□ 0.37
LIMS3-201ENST00000437679 SEMA3FQ13275 785 aa17.39■□□□□ 0.37
LIMS3-201ENST00000437679 AP3B2Q13367 1082 aa17.39■□□□□ 0.37
LIMS3-201ENST00000437679 PKN1Q16512 942 aa17.39■□□□□ 0.37
LIMS3-201ENST00000437679 HSDL1Q3SXM5 330 aa17.39■□□□□ 0.37
LIMS3-201ENST00000437679 MFSD5Q6N075 450 aa17.39■□□□□ 0.37
LIMS3-201ENST00000437679 METTL7BQ6UX53 244 aa17.39■□□□□ 0.37
LIMS3-201ENST00000437679 TMEM199Q8N511 208 aa17.39■□□□□ 0.37
LIMS3-201ENST00000437679 GIMAP8Q8ND71 665 aaPredicted RBP17.39■□□□□ 0.37
LIMS3-201ENST00000437679 GPRASP2Q96D09 838 aa17.39■□□□□ 0.37
LIMS3-201ENST00000437679 HIPK3Q9H422 1215 aa17.39■□□□□ 0.37
LIMS3-201ENST00000437679 C6orf50Q9HD87 102 aa17.39■□□□□ 0.37
LIMS3-201ENST00000437679 TRMT13Q9NUP7 481 aaKnown RBP17.39■□□□□ 0.37
LIMS3-201ENST00000437679 ESYT2A0FGR8 921 aa17.38■□□□□ 0.37
LIMS3-201ENST00000437679 PPFIA3O75145 1194 aa17.38■□□□□ 0.37
LIMS3-201ENST00000437679 HOXD8P13378 290 aaPredicted RBP17.38■□□□□ 0.37
LIMS3-201ENST00000437679 GNA11P29992 359 aa17.38■□□□□ 0.37
LIMS3-201ENST00000437679 PSEN2P49810 448 aa17.38■□□□□ 0.37
LIMS3-201ENST00000437679 SSRP1Q08945 709 aaKnown RBP17.38■□□□□ 0.37
LIMS3-201ENST00000437679 ANKRD1Q15327 319 aa17.38■□□□□ 0.37
LIMS3-201ENST00000437679 LRIT3Q3SXY7 679 aa17.38■□□□□ 0.37
LIMS3-201ENST00000437679 CYFIP1Q7L576 1253 aa17.38■□□□□ 0.37
LIMS3-201ENST00000437679 CCDC148Q8NFR7 591 aa17.38■□□□□ 0.37
LIMS3-201ENST00000437679 KAT2BQ92831 832 aa17.38■□□□□ 0.37
LIMS3-201ENST00000437679 PGBD1Q96JS3 809 aa17.38■□□□□ 0.37
LIMS3-201ENST00000437679 SENP7Q9BQF6 1050 aa17.38■□□□□ 0.37
LIMS3-201ENST00000437679 ANO3Q9BYT9 981 aa17.38■□□□□ 0.37
LIMS3-201ENST00000437679 NOD1Q9Y239 953 aa17.38■□□□□ 0.37
LIMS3-201ENST00000437679 UBIAD1Q9Y5Z9 338 aa17.38■□□□□ 0.37
LIMS3-201ENST00000437679 SLC34A2O95436 690 aa17.37■□□□□ 0.37
LIMS3-201ENST00000437679 SEC24BO95487 1268 aa17.37■□□□□ 0.37
LIMS3-201ENST00000437679 F2P00734 622 aa17.37■□□□□ 0.37
LIMS3-201ENST00000437679 ZNF286BP0CG31 522 aa17.37■□□□□ 0.37
LIMS3-201ENST00000437679 ITGB5P18084 799 aa17.37■□□□□ 0.37
LIMS3-201ENST00000437679 CYP2C18P33260 490 aa17.37■□□□□ 0.37
LIMS3-201ENST00000437679 PPIGQ13427 754 aaKnown RBP eCLIP17.37■□□□□ 0.37
LIMS3-201ENST00000437679 MTMR1Q13613 665 aa17.37■□□□□ 0.37
LIMS3-201ENST00000437679 MFSD10Q14728 455 aa17.37■□□□□ 0.37
LIMS3-201ENST00000437679 SHHQ15465 462 aa17.37■□□□□ 0.37
LIMS3-201ENST00000437679 MCTP2Q6DN12 878 aa17.37■□□□□ 0.37
LIMS3-201ENST00000437679 PPP1R13LQ8WUF5 828 aa17.37■□□□□ 0.37
LIMS3-201ENST00000437679 IL17RAQ96F46 866 aa17.37■□□□□ 0.37
LIMS3-201ENST00000437679 ALG1Q9BT22 464 aa17.37■□□□□ 0.37
LIMS3-201ENST00000437679 NOC4LQ9BVI4 516 aaKnown RBP17.37■□□□□ 0.37
LIMS3-201ENST00000437679 ZMYND12Q9H0C1 365 aa17.37■□□□□ 0.37
LIMS3-201ENST00000437679 SLKQ9H2G2 1235 aaPredicted RBP17.37■□□□□ 0.37
LIMS3-201ENST00000437679 JADE2Q9NQC1 790 aa17.37■□□□□ 0.37
LIMS3-201ENST00000437679 TMEM260Q9NX78 707 aa17.37■□□□□ 0.37
LIMS3-201ENST00000437679 LAMA3Q16787 3333 aa17.37■□□□□ 0.37
LIMS3-201ENST00000437679 DOCK5Q9H7D0 1870 aa17.36■□□□□ 0.37
LIMS3-201ENST00000437679 MAFGO15525 162 aa17.36■□□□□ 0.37
LIMS3-201ENST00000437679 CLK2P49760 499 aaKnown RBP17.36■□□□□ 0.37
LIMS3-201ENST00000437679 KIAA0753Q2KHM9 967 aa17.36■□□□□ 0.37
LIMS3-201ENST00000437679 C9orf50Q5SZB4 431 aa17.36■□□□□ 0.37
LIMS3-201ENST00000437679 JAKMIP3Q5VZ66 844 aa17.36■□□□□ 0.37
LIMS3-201ENST00000437679 SESTD1Q86VW0 696 aa17.36■□□□□ 0.37
LIMS3-201ENST00000437679 REXO1Q8N1G1 1221 aaKnown RBP17.36■□□□□ 0.37
LIMS3-201ENST00000437679 C7orf31Q8N865 590 aa17.36■□□□□ 0.37
LIMS3-201ENST00000437679 BICD2Q8TD16 824 aa17.36■□□□□ 0.37
LIMS3-201ENST00000437679 BCAS3Q9H6U6 928 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms