RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 CHMP6Q96FZ7 201 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 SETD1BQ9UPS6 1966 aaKnown RBP7.75□□□□□ -1.17
VPS53-204ENST00000437048 ABCC1P33527 1531 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 ZNF518AQ6AHZ1 1483 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 ART3Q13508 389 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 MORC3Q14149 939 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 SLC9C2Q5TAH2 1124 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 TXNDC2Q86VQ3 553 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 TTC17Q96AE7 1141 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 GGA2Q9UJY4 613 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 NPATQ14207 1427 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 MYO9BQ13459 2157 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 A0A1W2PQC6 194 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 MRPL28Q13084 256 aaKnown RBP7.75□□□□□ -1.17
VPS53-204ENST00000437048 DCAF17Q5H9S7 520 aaPredicted RBP7.75□□□□□ -1.17
VPS53-204ENST00000437048 CDC37L1Q7L3B6 337 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 RNF26Q9BY78 433 aaPredicted RBP7.75□□□□□ -1.17
VPS53-204ENST00000437048 AFG3L2Q9Y4W6 797 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 BAG2O95816 211 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 ANGPT1Q15389 498 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 TTC16Q8NEE8 873 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 MYH10P35580 1976 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 PI4KAP2A4QPH2 592 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 HEXIM1O94992 359 aaKnown RBP7.75□□□□□ -1.17
VPS53-204ENST00000437048 PAMP19021 973 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 SRLQ86TD4 932 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 PI4KAP1Q8N8J0 262 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 ZMYND12Q9H0C1 365 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 LAMC1P11047 1609 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 CLASP2O75122 1294 aaKnown RBP7.75□□□□□ -1.17
VPS53-204ENST00000437048 ZSCAN20P17040 1043 aaPredicted RBP7.75□□□□□ -1.17
VPS53-204ENST00000437048 MX2P20592 715 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 PTK2Q05397 1052 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 BFSP1Q12934 665 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 CATSPER2Q96P56 530 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 CDCA7Q9BWT1 371 aaPredicted RBP7.75□□□□□ -1.17
VPS53-204ENST00000437048 NFU1Q9UMS0 254 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 KDM1AO60341 852 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 TNNI2P48788 182 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 ATAD3BQ5T9A4 648 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 OLFML2BQ68BL8 750 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 ACAD11Q709F0 780 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 OSCARQ8IYS5 282 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 TADA1Q96BN2 335 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 ASPSCR1Q9BZE9 553 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 GOLPH3LQ9H4A5 285 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 BSDC1Q9NW68 430 aaPredicted RBP7.75□□□□□ -1.17
VPS53-204ENST00000437048 MROH5Q6ZUA9 1318 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 SLC4A4Q9Y6R1 1079 aa7.75□□□□□ -1.17
VPS53-204ENST00000437048 ATP5JP18859 108 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 POLE2P56282 527 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 TAP1Q03518 808 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 ARID5AQ03989 594 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 FBXL13Q8NEE6 735 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 EPN3Q9H201 632 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 CYP26B1Q9NR63 512 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 MED23Q9ULK4 1368 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 MYOM2P54296 1465 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 ATXN2Q99700 1313 aaKnown RBP7.74□□□□□ -1.17
VPS53-204ENST00000437048 EXOC1LA0A1B0GW35 172 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 ADCY7P51828 1080 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 NLRP11P59045 1033 aaKnown RBP7.74□□□□□ -1.17
VPS53-204ENST00000437048 ACBD5Q5T8D3 534 aaPredicted RBP7.74□□□□□ -1.17
VPS53-204ENST00000437048 PATL1Q86TB9 770 aaKnown RBP7.74□□□□□ -1.17
VPS53-204ENST00000437048 MAGEB5Q9BZ81 275 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 WWP1Q9H0M0 922 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 UBA2Q9UBT2 640 aaPredicted RBP7.74□□□□□ -1.17
VPS53-204ENST00000437048 RAD54L2Q9Y4B4 1467 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 ZMYM6O95789 1325 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 STAM2O75886 525 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 SERPING1P05155 500 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 TRIM50Q86XT4 487 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 SYCE1LA8MT33 242 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 GOLGA8RI6L899 631 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 MED7O43513 233 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 AGBL2Q5U5Z8 902 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 DIS3L2Q8IYB7 885 aaKnown RBP7.74□□□□□ -1.17
VPS53-204ENST00000437048 C8orf4Q9NR00 106 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 STRIP2Q9ULQ0 834 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 ENOSF1Q7L5Y1 443 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 PASD1Q8IV76 773 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 COG1Q8WTW3 980 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 PBXIP1Q96AQ6 731 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 TMEM206Q9H813 350 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 UBN1Q9NPG3 1134 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 AGTP01019 485 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 BNC1Q01954 994 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 GUCY1A3Q02108 690 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 KSR1Q8IVT5 923 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 SLF1Q9BQI6 1058 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 PITPNM2Q9BZ72 1349 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.74□□□□□ -1.17
VPS53-204ENST00000437048 ZFRQ96KR1 1074 aaKnown RBP7.74□□□□□ -1.17
VPS53-204ENST00000437048 GNGT2O14610 69 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 SMARCA1P28370 1054 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 TRMT10CQ7L0Y3 403 aaKnown RBP7.74□□□□□ -1.17
VPS53-204ENST00000437048 HPS3Q969F9 1004 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 ASAP2O43150 1006 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 PPP2R2AP63151 447 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 TRIM72Q6ZMU5 477 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms