RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 TMA7Q9Y2S6 64 aaKnown RBP8.35□□□□□ -1.07
CCDC88A-206ENST00000430086 KRIT1O00522 736 aa8.34□□□□□ -1.07
CCDC88A-206ENST00000430086 NFIBO00712 420 aa8.34□□□□□ -1.07
CCDC88A-206ENST00000430086 MAFKO60675 156 aa8.34□□□□□ -1.07
CCDC88A-206ENST00000430086 APPP05067 770 aa8.34□□□□□ -1.07
CCDC88A-206ENST00000430086 SPIRE1Q08AE8 756 aa8.34□□□□□ -1.07
CCDC88A-206ENST00000430086 TARBP2Q15633 366 aaKnown RBP8.34□□□□□ -1.07
CCDC88A-206ENST00000430086 MILR1Q7Z6M3 343 aa8.34□□□□□ -1.07
CCDC88A-206ENST00000430086 NLGN1Q8N2Q7 840 aa8.34□□□□□ -1.07
CCDC88A-206ENST00000430086 PHOSPHO1Q8TCT1 267 aa8.34□□□□□ -1.07
CCDC88A-206ENST00000430086 ALG3Q92685 438 aa8.34□□□□□ -1.07
CCDC88A-206ENST00000430086 KCNJ15Q99712 375 aa8.34□□□□□ -1.07
CCDC88A-206ENST00000430086 SMOC1Q9H4F8 434 aa8.34□□□□□ -1.07
CCDC88A-206ENST00000430086 GNAT1P11488 350 aa8.33□□□□□ -1.08
CCDC88A-206ENST00000430086 NCAM1P13591 858 aa8.33□□□□□ -1.08
CCDC88A-206ENST00000430086 C16orf59Q7L2K0 433 aa8.33□□□□□ -1.08
CCDC88A-206ENST00000430086 FGD2Q7Z6J4 655 aa8.33□□□□□ -1.08
CCDC88A-206ENST00000430086 MIB1Q86YT6 1006 aa8.33□□□□□ -1.08
CCDC88A-206ENST00000430086 IGDCC3Q8IVU1 814 aa8.33□□□□□ -1.08
CCDC88A-206ENST00000430086 PIP4K2CQ8TBX8 421 aa8.33□□□□□ -1.08
CCDC88A-206ENST00000430086 CPA5Q8WXQ8 436 aa8.33□□□□□ -1.08
CCDC88A-206ENST00000430086 FBXW5Q969U6 566 aa8.33□□□□□ -1.08
CCDC88A-206ENST00000430086 PLA2G2DQ9UNK4 145 aa8.33□□□□□ -1.08
CCDC88A-206ENST00000430086 TCRBV16S1A1N1A0A5B0 115 aa8.32□□□□□ -1.08
CCDC88A-206ENST00000430086 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.32□□□□□ -1.08
CCDC88A-206ENST00000430086 IRS4O14654 1257 aaPredicted RBP8.32□□□□□ -1.08
CCDC88A-206ENST00000430086 GSTA4O15217 222 aa8.32□□□□□ -1.08
CCDC88A-206ENST00000430086 RASGRP1O95267 797 aa8.32□□□□□ -1.08
CCDC88A-206ENST00000430086 ASGR2P07307 311 aa8.32□□□□□ -1.08
CCDC88A-206ENST00000430086 C8AP07357 584 aa8.32□□□□□ -1.08
CCDC88A-206ENST00000430086 C1QTNF9P0C862 333 aa8.32□□□□□ -1.08
CCDC88A-206ENST00000430086 PFKLP17858 780 aa8.32□□□□□ -1.08
CCDC88A-206ENST00000430086 IGFBP6P24592 240 aaPredicted RBP8.32□□□□□ -1.08
CCDC88A-206ENST00000430086 PMLP29590 882 aa8.32□□□□□ -1.08
CCDC88A-206ENST00000430086 EPHB3P54753 998 aa8.32□□□□□ -1.08
CCDC88A-206ENST00000430086 PABPC4Q13310 644 aaKnown RBP eCLIP8.32□□□□□ -1.08
CCDC88A-206ENST00000430086 ATG14Q6ZNE5 492 aa8.32□□□□□ -1.08
CCDC88A-206ENST00000430086 KIAA0907Q7Z7F0 614 aaPredicted RBP8.32□□□□□ -1.08
CCDC88A-206ENST00000430086 AMIGO3Q86WK7 504 aa8.32□□□□□ -1.08
CCDC88A-206ENST00000430086 ZC3H7AQ8IWR0 971 aaKnown RBP8.32□□□□□ -1.08
CCDC88A-206ENST00000430086 PDGFDQ9GZP0 370 aaPredicted RBP8.32□□□□□ -1.08
CCDC88A-206ENST00000430086 BCAS3Q9H6U6 928 aa8.32□□□□□ -1.08
CCDC88A-206ENST00000430086 CD320Q9NPF0 282 aa8.32□□□□□ -1.08
CCDC88A-206ENST00000430086 PCDHB4Q9Y5E5 795 aa8.32□□□□□ -1.08
CCDC88A-206ENST00000430086 PKN1Q16512 942 aa8.31□□□□□ -1.08
CCDC88A-206ENST00000430086 TKFCQ3LXA3 575 aa8.31□□□□□ -1.08
CCDC88A-206ENST00000430086 PLEKHG4Q58EX7 1191 aa8.31□□□□□ -1.08
CCDC88A-206ENST00000430086 UHMK1Q8TAS1 419 aaKnown RBP8.31□□□□□ -1.08
CCDC88A-206ENST00000430086 SIGLEC10Q96LC7 697 aa8.31□□□□□ -1.08
CCDC88A-206ENST00000430086 FEZ1Q99689 392 aa8.31□□□□□ -1.08
CCDC88A-206ENST00000430086 MYOTQ9UBF9 498 aa8.31□□□□□ -1.08
CCDC88A-206ENST00000430086 NUB1Q9Y5A7 615 aa8.31□□□□□ -1.08
CCDC88A-206ENST00000430086 CD2APQ9Y5K6 639 aa8.31□□□□□ -1.08
CCDC88A-206ENST00000430086 TCRBV5S2A0A599 114 aa8.3□□□□□ -1.08
CCDC88A-206ENST00000430086 TCAF2A6NFQ2 919 aa8.3□□□□□ -1.08
CCDC88A-206ENST00000430086 NKRFO15226 690 aaKnown RBP eCLIP8.3□□□□□ -1.08
CCDC88A-206ENST00000430086 NPTXRO95502 500 aa8.3□□□□□ -1.08
CCDC88A-206ENST00000430086 CKMP06732 381 aa8.3□□□□□ -1.08
CCDC88A-206ENST00000430086 SRGAP2CP0DJJ0 459 aa8.3□□□□□ -1.08
CCDC88A-206ENST00000430086 COL6A2P12110 1019 aa8.3□□□□□ -1.08
CCDC88A-206ENST00000430086 KCNA6P17658 529 aa8.3□□□□□ -1.08
CCDC88A-206ENST00000430086 RAP1GAPP47736 663 aa8.3□□□□□ -1.08
CCDC88A-206ENST00000430086 NCKAP1LP55160 1127 aa8.3□□□□□ -1.08
CCDC88A-206ENST00000430086 FAM47CQ5HY64 1035 aa8.3□□□□□ -1.08
CCDC88A-206ENST00000430086 SDE2Q6IQ49 451 aa8.3□□□□□ -1.08
CCDC88A-206ENST00000430086 TRIM48Q8IWZ4 208 aa8.3□□□□□ -1.08
CCDC88A-206ENST00000430086 FAM126BQ8IXS8 530 aa8.3□□□□□ -1.08
CCDC88A-206ENST00000430086 PANK1Q8TE04 598 aa8.3□□□□□ -1.08
CCDC88A-206ENST00000430086 CELF4Q9BZC1 486 aaKnown RBP8.3□□□□□ -1.08
CCDC88A-206ENST00000430086 ASH2LQ9UBL3 628 aa8.3□□□□□ -1.08
CCDC88A-206ENST00000430086 SMG5Q9UPR3 1016 aaKnown RBP8.3□□□□□ -1.08
CCDC88A-206ENST00000430086 KRTAP9-6A0A140TA67 174 aa8.29□□□□□ -1.08
CCDC88A-206ENST00000430086 BUB1BO60566 1050 aaPredicted RBP8.29□□□□□ -1.08
CCDC88A-206ENST00000430086 DNAJC8O75937 253 aaPredicted RBP8.29□□□□□ -1.08
CCDC88A-206ENST00000430086 ASLP04424 464 aa8.29□□□□□ -1.08
CCDC88A-206ENST00000430086 PYGMP11217 842 aa8.29□□□□□ -1.08
CCDC88A-206ENST00000430086 ATF2P15336 505 aa8.29□□□□□ -1.08
CCDC88A-206ENST00000430086 ST5P78524 1137 aa8.29□□□□□ -1.08
CCDC88A-206ENST00000430086 CACNB2Q08289 660 aaPredicted RBP8.29□□□□□ -1.08
CCDC88A-206ENST00000430086 GPR19Q15760 415 aa8.29□□□□□ -1.08
CCDC88A-206ENST00000430086 ETV3LQ6ZN32 361 aa8.29□□□□□ -1.08
CCDC88A-206ENST00000430086 NINJ1Q92982 152 aa8.29□□□□□ -1.08
CCDC88A-206ENST00000430086 INTS7Q9NVH2 962 aaKnown RBP8.29□□□□□ -1.08
CCDC88A-206ENST00000430086 DSEQ9UL01 958 aa8.29□□□□□ -1.08
CCDC88A-206ENST00000430086 CCDC66A2RUB6 948 aa8.28□□□□□ -1.08
CCDC88A-206ENST00000430086 B4E1Z4 1266 aa8.28□□□□□ -1.08
CCDC88A-206ENST00000430086 HSD3B2P26439 372 aa8.28□□□□□ -1.08
CCDC88A-206ENST00000430086 IGFALSP35858 605 aa8.28□□□□□ -1.08
CCDC88A-206ENST00000430086 LACTBP83111 547 aaPredicted RBP8.28□□□□□ -1.08
CCDC88A-206ENST00000430086 CRY1Q16526 586 aa8.28□□□□□ -1.08
CCDC88A-206ENST00000430086 B3GNT8Q7Z7M8 397 aa8.28□□□□□ -1.08
CCDC88A-206ENST00000430086 ARRDC4Q8NCT1 418 aa8.28□□□□□ -1.08
CCDC88A-206ENST00000430086 TTLL11Q8NHH1 800 aa8.28□□□□□ -1.08
CCDC88A-206ENST00000430086 CATSPERZQ9NTU4 200 aa8.28□□□□□ -1.08
CCDC88A-206ENST00000430086 MAGEC2Q9UBF1 373 aaPredicted RBP8.28□□□□□ -1.08
CCDC88A-206ENST00000430086 CBLCQ9ULV8 474 aa8.28□□□□□ -1.08
CCDC88A-206ENST00000430086 PLAAQ9Y263 795 aa8.28□□□□□ -1.08
CCDC88A-206ENST00000430086 IRAK3Q9Y616 596 aa8.28□□□□□ -1.08
CCDC88A-206ENST00000430086 TCRBV5S4A2TA0A5A2 114 aa8.27□□□□□ -1.09
CCDC88A-206ENST00000430086 SLC27A2O14975 620 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms