RNA–Protein interactions for RNA: ENST00000428696.6

SGCE-204, Transcript of sarcoglycan epsilon, humanhuman

TSL 1 (best) BASIC

Gene SGCE, Length 1,409 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-204ENST00000428696 FRMPD4Q14CM0 1322 aa16.58■□□□□ 0.25
SGCE-204ENST00000428696 SYNRGQ9UMZ2 1314 aa16.58■□□□□ 0.25
SGCE-204ENST00000428696 FIBPO43427 364 aa16.58■□□□□ 0.24
SGCE-204ENST00000428696 FARP2O94887 1054 aaPredicted RBP16.58■□□□□ 0.24
SGCE-204ENST00000428696 GH1P01241 217 aa16.58■□□□□ 0.24
SGCE-204ENST00000428696 ITGB5P18084 799 aa16.58■□□□□ 0.24
SGCE-204ENST00000428696 ATP2B1P20020 1258 aa16.58■□□□□ 0.24
SGCE-204ENST00000428696 LRRC41Q15345 812 aa16.58■□□□□ 0.24
SGCE-204ENST00000428696 INF2Q27J81 1249 aa16.58■□□□□ 0.24
SGCE-204ENST00000428696 PRR16Q569H4 304 aa16.58■□□□□ 0.24
SGCE-204ENST00000428696 LARP1BQ659C4 914 aaKnown RBP16.58■□□□□ 0.24
SGCE-204ENST00000428696 KCNV1Q6PIU1 500 aa16.58■□□□□ 0.24
SGCE-204ENST00000428696 DIS3LQ8TF46 1054 aaKnown RBP16.58■□□□□ 0.24
SGCE-204ENST00000428696 MXRA8Q9BRK3 442 aa16.58■□□□□ 0.24
SGCE-204ENST00000428696 SENP6Q9GZR1 1112 aaPredicted RBP16.58■□□□□ 0.24
SGCE-204ENST00000428696 DDX41Q9UJV9 622 aaKnown RBP16.58■□□□□ 0.24
SGCE-204ENST00000428696 KIAA0100Q14667 2235 aaKnown RBP16.58■□□□□ 0.24
SGCE-204ENST00000428696 BRCA2P51587 3418 aa16.57■□□□□ 0.24
SGCE-204ENST00000428696 MYADML2A6NDP7 307 aa16.57■□□□□ 0.24
SGCE-204ENST00000428696 SPATA31C2B4DYI2 1134 aa16.57■□□□□ 0.24
SGCE-204ENST00000428696 GGPS1O95749 300 aa16.57■□□□□ 0.24
SGCE-204ENST00000428696 CUL4AQ13619 759 aa16.57■□□□□ 0.24
SGCE-204ENST00000428696 NPY5RQ15761 445 aa16.57■□□□□ 0.24
SGCE-204ENST00000428696 KCNA10Q16322 511 aa16.57■□□□□ 0.24
SGCE-204ENST00000428696 FSCN1Q16658 493 aaKnown RBP16.57■□□□□ 0.24
SGCE-204ENST00000428696 LETM2Q2VYF4 491 aa16.57■□□□□ 0.24
SGCE-204ENST00000428696 CEP55Q53EZ4 464 aa16.57■□□□□ 0.24
SGCE-204ENST00000428696 BRDTQ58F21 947 aaPredicted RBP16.57■□□□□ 0.24
SGCE-204ENST00000428696 CCDC62Q6P9F0 684 aa16.57■□□□□ 0.24
SGCE-204ENST00000428696 PLA2G4DQ86XP0 818 aa16.57■□□□□ 0.24
SGCE-204ENST00000428696 FBXO18Q8NFZ0 1043 aa16.57■□□□□ 0.24
SGCE-204ENST00000428696 CDHR1Q96JP9 859 aa16.57■□□□□ 0.24
SGCE-204ENST00000428696 INPP4AQ96PE3 977 aaPredicted RBP16.57■□□□□ 0.24
SGCE-204ENST00000428696 JADE2Q9NQC1 790 aa16.57■□□□□ 0.24
SGCE-204ENST00000428696 GNEQ9Y223 722 aaKnown RBP16.57■□□□□ 0.24
SGCE-204ENST00000428696 UBIAD1Q9Y5Z9 338 aa16.57■□□□□ 0.24
SGCE-204ENST00000428696 RBBP6Q7Z6E9 1792 aaKnown RBP16.57■□□□□ 0.24
SGCE-204ENST00000428696 LCTP09848 1927 aa16.56■□□□□ 0.24
SGCE-204ENST00000428696 NKRFO15226 690 aaKnown RBP eCLIP16.56■□□□□ 0.24
SGCE-204ENST00000428696 MYL3P08590 195 aa16.56■□□□□ 0.24
SGCE-204ENST00000428696 ARP10275 920 aa16.56■□□□□ 0.24
SGCE-204ENST00000428696 TGFB3P10600 412 aa16.56■□□□□ 0.24
SGCE-204ENST00000428696 GJA9P57773 515 aa16.56■□□□□ 0.24
SGCE-204ENST00000428696 SP2Q02086 613 aa16.56■□□□□ 0.24
SGCE-204ENST00000428696 CYFIP1Q7L576 1253 aa16.56■□□□□ 0.24
SGCE-204ENST00000428696 NECAB2Q7Z6G3 386 aa16.56■□□□□ 0.24
SGCE-204ENST00000428696 AFG1LQ8WV93 481 aa16.56■□□□□ 0.24
SGCE-204ENST00000428696 SPATA33Q96N06 139 aa16.56■□□□□ 0.24
SGCE-204ENST00000428696 BCAS3Q9H6U6 928 aa16.56■□□□□ 0.24
SGCE-204ENST00000428696 FAM205CA6NFA0 338 aa16.55■□□□□ 0.24
SGCE-204ENST00000428696 FAM86B1E9PN63 330 aa16.55■□□□□ 0.24
SGCE-204ENST00000428696 M0R2N6 131 aa16.55■□□□□ 0.24
SGCE-204ENST00000428696 DNM1LO00429 736 aa16.55■□□□□ 0.24
SGCE-204ENST00000428696 ZEB2O60315 1214 aa16.55■□□□□ 0.24
SGCE-204ENST00000428696 MARCH6O60337 910 aa16.55■□□□□ 0.24
SGCE-204ENST00000428696 FAM86B2P0C5J1 330 aa16.55■□□□□ 0.24
SGCE-204ENST00000428696 UBA1P22314 1058 aaKnown RBP16.55■□□□□ 0.24
SGCE-204ENST00000428696 USP11P51784 963 aa16.55■□□□□ 0.24
SGCE-204ENST00000428696 ATN1P54259 1190 aaPredicted RBP16.55■□□□□ 0.24
SGCE-204ENST00000428696 LAMC2Q13753 1193 aa16.55■□□□□ 0.24
SGCE-204ENST00000428696 GPRASP2Q96D09 838 aa16.55■□□□□ 0.24
SGCE-204ENST00000428696 C11orf49Q9H6J7 331 aa16.55■□□□□ 0.24
SGCE-204ENST00000428696 KCNH7Q9NS40 1196 aa16.55■□□□□ 0.24
SGCE-204ENST00000428696 Q9Y3F1 56 aa16.55■□□□□ 0.24
SGCE-204ENST00000428696 DDX39AO00148 427 aaKnown RBP16.54■□□□□ 0.24
SGCE-204ENST00000428696 NOP56O00567 594 aaKnown RBP16.54■□□□□ 0.24
SGCE-204ENST00000428696 CCNT1O60563 726 aaKnown RBP16.54■□□□□ 0.24
SGCE-204ENST00000428696 ATP9AO75110 1047 aa16.54■□□□□ 0.24
SGCE-204ENST00000428696 ADAMTS4O75173 837 aa16.54■□□□□ 0.24
SGCE-204ENST00000428696 CPT1AP50416 773 aa16.54■□□□□ 0.24
SGCE-204ENST00000428696 ACLYP53396 1101 aa16.54■□□□□ 0.24
SGCE-204ENST00000428696 SEMA3FQ13275 785 aa16.54■□□□□ 0.24
SGCE-204ENST00000428696 NEDD9Q14511 834 aa16.54■□□□□ 0.24
SGCE-204ENST00000428696 EARS2Q5JPH6 523 aaKnown RBP16.54■□□□□ 0.24
SGCE-204ENST00000428696 CELF3Q5SZQ8 465 aaKnown RBP16.54■□□□□ 0.24
SGCE-204ENST00000428696 CXCL17Q6UXB2 119 aa16.54■□□□□ 0.24
SGCE-204ENST00000428696 ANKLE1Q8NAG6 615 aa16.54■□□□□ 0.24
SGCE-204ENST00000428696 PCSK9Q8NBP7 692 aaKnown RBP16.54■□□□□ 0.24
SGCE-204ENST00000428696 SDF4Q9BRK5 362 aa16.54■□□□□ 0.24
SGCE-204ENST00000428696 VPS37CA5D8V6 355 aaPredicted RBP16.53■□□□□ 0.24
SGCE-204ENST00000428696 MEIS1O00470 390 aa16.53■□□□□ 0.24
SGCE-204ENST00000428696 TDP2O95551 362 aa16.53■□□□□ 0.24
SGCE-204ENST00000428696 ASGR1P07306 291 aa16.53■□□□□ 0.24
SGCE-204ENST00000428696 CYP3A4P08684 503 aa16.53■□□□□ 0.24
SGCE-204ENST00000428696 ICAM3P32942 547 aa16.53■□□□□ 0.24
SGCE-204ENST00000428696 ARHGAP1Q07960 439 aa16.53■□□□□ 0.24
SGCE-204ENST00000428696 MYSM1Q5VVJ2 828 aa16.53■□□□□ 0.24
SGCE-204ENST00000428696 NEK8Q86SG6 692 aa16.53■□□□□ 0.24
SGCE-204ENST00000428696 GIMAP8Q8ND71 665 aaPredicted RBP16.53■□□□□ 0.24
SGCE-204ENST00000428696 ZNF577Q9BSK1 485 aa16.53■□□□□ 0.24
SGCE-204ENST00000428696 UPF3AQ9H1J1 476 aaKnown RBP16.53■□□□□ 0.24
SGCE-204ENST00000428696 MAFGO15525 162 aa16.53■□□□□ 0.24
SGCE-204ENST00000428696 CAPN2P17655 700 aa16.53■□□□□ 0.24
SGCE-204ENST00000428696 PDCP20941 246 aa16.53■□□□□ 0.24
SGCE-204ENST00000428696 BECN1Q14457 450 aa16.53■□□□□ 0.24
SGCE-204ENST00000428696 KLHDC9Q8NEP7 349 aa16.53■□□□□ 0.24
SGCE-204ENST00000428696 DPF3Q92784 378 aa16.53■□□□□ 0.24
SGCE-204ENST00000428696 INTS4Q96HW7 963 aaKnown RBP16.53■□□□□ 0.24
SGCE-204ENST00000428696 GLT1D1Q96MS3 346 aa16.53■□□□□ 0.24
SGCE-204ENST00000428696 FOXP1Q9H334 677 aaPredicted RBP16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms