RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 E9PMD0 336 aa29.64■■■□□ 2.34
LDB1-202ENST00000425280 MAP3K9P80192 1104 aa29.64■■■□□ 2.34
LDB1-202ENST00000425280 STK4Q13043 487 aa29.64■■■□□ 2.34
LDB1-202ENST00000425280 STIM1Q13586 685 aa29.64■■■□□ 2.34
LDB1-202ENST00000425280 VGLL4Q14135 290 aa29.64■■■□□ 2.34
LDB1-202ENST00000425280 DDX12PQ92771 950 aa29.64■■■□□ 2.34
LDB1-202ENST00000425280 FCER1AP12319 257 aa29.64■■■□□ 2.33
LDB1-202ENST00000425280 CATSPER3Q86XQ3 398 aa29.64■■■□□ 2.33
LDB1-202ENST00000425280 SLC5A5Q92911 643 aa29.64■■■□□ 2.33
LDB1-202ENST00000425280 TMOD4Q9NZQ9 345 aa29.64■■■□□ 2.33
LDB1-202ENST00000425280 RABGAP1Q9Y3P9 1069 aa29.64■■■□□ 2.33
LDB1-202ENST00000425280 STK24Q9Y6E0 443 aa29.64■■■□□ 2.33
LDB1-202ENST00000425280 PAPPA2Q9BXP8 1791 aa29.63■■■□□ 2.33
LDB1-202ENST00000425280 DSG3P32926 999 aa29.63■■■□□ 2.33
LDB1-202ENST00000425280 DPY19L2Q6NUT2 758 aa29.63■■■□□ 2.33
LDB1-202ENST00000425280 C17orf53Q8N3J3 647 aaPredicted RBP29.63■■■□□ 2.33
LDB1-202ENST00000425280 REPS2Q8NFH8 660 aa29.63■■■□□ 2.33
LDB1-202ENST00000425280 L3MBTL3Q96JM7 780 aaPredicted RBP29.63■■■□□ 2.33
LDB1-202ENST00000425280 ZFP91Q96JP5 570 aaPredicted RBP29.63■■■□□ 2.33
LDB1-202ENST00000425280 MEIS1O00470 390 aa29.62■■■□□ 2.33
LDB1-202ENST00000425280 PSMA7O14818 248 aa29.62■■■□□ 2.33
LDB1-202ENST00000425280 SPATA31C1P0DKV0 1188 aa29.62■■■□□ 2.33
LDB1-202ENST00000425280 RPA1P27694 616 aa29.62■■■□□ 2.33
LDB1-202ENST00000425280 SAMD3Q8N6K7 520 aa29.62■■■□□ 2.33
LDB1-202ENST00000425280 SYTL5Q8TDW5 730 aaPredicted RBP29.62■■■□□ 2.33
LDB1-202ENST00000425280 TRERF1Q96PN7 1200 aa29.62■■■□□ 2.33
LDB1-202ENST00000425280 MAP3K20Q9NYL2 800 aaKnown RBP29.62■■■□□ 2.33
LDB1-202ENST00000425280 ADAMTS5Q9UNA0 930 aa29.62■■■□□ 2.33
LDB1-202ENST00000425280 WDR90Q96KV7 1748 aa29.62■■■□□ 2.33
LDB1-202ENST00000425280 COL11A1P12107 1806 aaPredicted RBP29.62■■■□□ 2.33
LDB1-202ENST00000425280 POTEFA5A3E0 1075 aa29.62■■■□□ 2.33
LDB1-202ENST00000425280 TRIM49BA6NDI0 452 aa29.62■■■□□ 2.33
LDB1-202ENST00000425280 PSMD10O75832 226 aa29.62■■■□□ 2.33
LDB1-202ENST00000425280 PLA2G4BP0C869 781 aa29.62■■■□□ 2.33
LDB1-202ENST00000425280 POTEIP0CG38 1075 aa29.62■■■□□ 2.33
LDB1-202ENST00000425280 PMS1P54277 932 aaKnown RBP29.62■■■□□ 2.33
LDB1-202ENST00000425280 POTEGQ6S5H5 508 aa29.62■■■□□ 2.33
LDB1-202ENST00000425280 POTEEQ6S8J3 1075 aa29.62■■■□□ 2.33
LDB1-202ENST00000425280 CATSPERGQ6ZRH7 1159 aa29.62■■■□□ 2.33
LDB1-202ENST00000425280 KRT26Q7Z3Y9 468 aa29.62■■■□□ 2.33
LDB1-202ENST00000425280 DHTKD1Q96HY7 919 aaPredicted RBP29.62■■■□□ 2.33
LDB1-202ENST00000425280 OTOFQ9HC10 1997 aa29.61■■■□□ 2.33
LDB1-202ENST00000425280 A0A1B0GTH6 734 aa29.61■■■□□ 2.33
LDB1-202ENST00000425280 COG2Q14746 738 aa29.61■■■□□ 2.33
LDB1-202ENST00000425280 COBLL1Q53SF7 1204 aa29.61■■■□□ 2.33
LDB1-202ENST00000425280 KIAA0895Q8NCT3 520 aa29.61■■■□□ 2.33
LDB1-202ENST00000425280 HPS3Q969F9 1004 aa29.61■■■□□ 2.33
LDB1-202ENST00000425280 DNAJC19Q96DA6 116 aa29.61■■■□□ 2.33
LDB1-202ENST00000425280 EML1O00423 815 aa29.6■■■□□ 2.33
LDB1-202ENST00000425280 SETQ01105 290 aaPredicted RBP29.6■■■□□ 2.33
LDB1-202ENST00000425280 NR1I3Q14994 352 aa29.6■■■□□ 2.33
LDB1-202ENST00000425280 PTPN21Q16825 1174 aa29.6■■■□□ 2.33
LDB1-202ENST00000425280 SH3D19Q5HYK7 790 aa29.6■■■□□ 2.33
LDB1-202ENST00000425280 LRCH2Q5VUJ6 765 aa29.6■■■□□ 2.33
LDB1-202ENST00000425280 OTOP1Q7RTM1 612 aa29.6■■■□□ 2.33
LDB1-202ENST00000425280 MXRA8Q9BRK3 442 aa29.6■■■□□ 2.33
LDB1-202ENST00000425280 SSBP05455 408 aaKnown RBP eCLIP29.6■■■□□ 2.33
LDB1-202ENST00000425280 ARP10275 920 aa29.6■■■□□ 2.33
LDB1-202ENST00000425280 SLC30A10Q6XR72 485 aa29.6■■■□□ 2.33
LDB1-202ENST00000425280 IL31RAQ8NI17 732 aa29.6■■■□□ 2.33
LDB1-202ENST00000425280 RIPK3Q9Y572 518 aa29.6■■■□□ 2.33
LDB1-202ENST00000425280 PPP1R12BO60237 982 aaPredicted RBP29.59■■■□□ 2.33
LDB1-202ENST00000425280 RPS6P62753 249 aaKnown RBP29.59■■■□□ 2.33
LDB1-202ENST00000425280 ARMCX5Q6P1M9 558 aa29.59■■■□□ 2.33
LDB1-202ENST00000425280 USP50Q70EL3 339 aaPredicted RBP29.59■■■□□ 2.33
LDB1-202ENST00000425280 POLR3CQ9BUI4 534 aaPredicted RBP29.59■■■□□ 2.33
LDB1-202ENST00000425280 SLC39A2Q9NP94 309 aa29.59■■■□□ 2.33
LDB1-202ENST00000425280 ZBTB4Q9P1Z0 1013 aaPredicted RBP29.59■■■□□ 2.33
LDB1-202ENST00000425280 IDEP14735 1019 aa29.59■■■□□ 2.33
LDB1-202ENST00000425280 PPP1R2P41236 205 aa29.59■■■□□ 2.33
LDB1-202ENST00000425280 OAZ1P54368 228 aa29.59■■■□□ 2.33
LDB1-202ENST00000425280 EHHADHQ08426 723 aa29.59■■■□□ 2.33
LDB1-202ENST00000425280 PPP2R5CQ13362 524 aa29.59■■■□□ 2.33
LDB1-202ENST00000425280 NOLC1Q14978 699 aaKnown RBP eCLIP29.59■■■□□ 2.33
LDB1-202ENST00000425280 EIF2AK1Q9BQI3 630 aaKnown RBP29.59■■■□□ 2.33
LDB1-202ENST00000425280 FRMPD4Q14CM0 1322 aa29.58■■■□□ 2.33
LDB1-202ENST00000425280 ITGB5P18084 799 aa29.58■■■□□ 2.33
LDB1-202ENST00000425280 TTI2Q6NXR4 508 aa29.58■■■□□ 2.33
LDB1-202ENST00000425280 CCDC150Q8NCX0 1101 aa29.58■■■□□ 2.33
LDB1-202ENST00000425280 RBM46Q8TBY0 533 aaKnown RBP29.58■■■□□ 2.33
LDB1-202ENST00000425280 TAAR1Q96RJ0 339 aa29.58■■■□□ 2.33
LDB1-202ENST00000425280 CTAGE1Q96RT6 745 aa29.58■■■□□ 2.33
LDB1-202ENST00000425280 ZNF577Q9BSK1 485 aa29.58■■■□□ 2.33
LDB1-202ENST00000425280 RNF146Q9NTX7 359 aa29.58■■■□□ 2.33
LDB1-202ENST00000425280 ADD3Q9UEY8 706 aaKnown RBP29.58■■■□□ 2.33
LDB1-202ENST00000425280 EPHX2P34913 555 aa29.57■■■□□ 2.32
LDB1-202ENST00000425280 SLC12A3P55017 1021 aa29.57■■■□□ 2.32
LDB1-202ENST00000425280 PSMC6P62333 389 aa29.57■■■□□ 2.32
LDB1-202ENST00000425280 CCZ1BP86790 482 aa29.57■■■□□ 2.32
LDB1-202ENST00000425280 CCZ1P86791 482 aaPredicted RBP29.57■■■□□ 2.32
LDB1-202ENST00000425280 GPBP1Q86WP2 473 aa29.57■■■□□ 2.32
LDB1-202ENST00000425280 LIMA1Q9UHB6 759 aaKnown RBP29.57■■■□□ 2.32
LDB1-202ENST00000425280 CSADQ9Y600 493 aa29.57■■■□□ 2.32
LDB1-202ENST00000425280 GAS7O60861 476 aa29.57■■■□□ 2.32
LDB1-202ENST00000425280 CCNE1P24864 410 aa29.57■■■□□ 2.32
LDB1-202ENST00000425280 PCNX4Q63HM2 1172 aa29.57■■■□□ 2.32
LDB1-202ENST00000425280 RNF207Q6ZRF8 634 aa29.57■■■□□ 2.32
LDB1-202ENST00000425280 P2RX5Q93086 422 aa29.57■■■□□ 2.32
LDB1-202ENST00000425280 BMP2KQ9NSY1 1161 aaPredicted RBP29.57■■■□□ 2.32
LDB1-202ENST00000425280 SPTLC3Q9NUV7 552 aa29.57■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms