RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 ZSWIM5Q9P217 1185 aa10.77□□□□□ -0.69
USP54-205ENST00000424265 PNMA3Q9UL41 463 aa10.77□□□□□ -0.69
USP54-205ENST00000424265 SERPINC1P01008 464 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 PDHBP11177 359 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 IFNAR1P17181 557 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 KLRK1P26718 216 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 GCLCP48506 637 aaPredicted RBP10.76□□□□□ -0.69
USP54-205ENST00000424265 CXCL9Q07325 125 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 IFT88Q13099 833 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 ARHGEF6Q15052 776 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 ME3Q16798 604 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 C9orf131Q5VYM1 1079 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 CCHCR1Q8TD31 782 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 RABL2BQ9UNT1 228 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 TJP1Q07157 1748 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 GAKO14976 1311 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 STK36Q9NRP7 1315 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 SPDYE2BA6NHP3 402 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 SPDYE6P0CI01 402 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 COPB2P35606 906 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 CCNA1P78396 465 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 MPP3Q13368 585 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 CUL4AQ13619 759 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 NOP53Q9NZM5 478 aaKnown RBP10.76□□□□□ -0.69
USP54-205ENST00000424265 DDX20Q9UHI6 824 aaKnown RBP10.76□□□□□ -0.69
USP54-205ENST00000424265 BMP3P12645 472 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 OSBPL1AQ9BXW6 950 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 SPATA7Q9P0W8 599 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 C10orf71Q711Q0 1435 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 ZC3H4Q9UPT8 1303 aaKnown RBP10.76□□□□□ -0.69
USP54-205ENST00000424265 PPFIA3O75145 1194 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 CLTAP09496 248 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 TRIM68Q6AZZ1 485 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 TMEM87AQ8NBN3 555 aa10.76□□□□□ -0.69
USP54-205ENST00000424265 RBM46Q8TBY0 533 aaKnown RBP10.76□□□□□ -0.69
USP54-205ENST00000424265 MMTAG2Q9BU76 263 aaKnown RBP10.76□□□□□ -0.69
USP54-205ENST00000424265 DNAAF2Q9NVR5 837 aaKnown RBP10.76□□□□□ -0.69
USP54-205ENST00000424265 FESP07332 822 aa10.75□□□□□ -0.69
USP54-205ENST00000424265 SCG2P13521 617 aa10.75□□□□□ -0.69
USP54-205ENST00000424265 CTCFP49711 727 aaPredicted RBP10.75□□□□□ -0.69
USP54-205ENST00000424265 DNM1Q05193 864 aaKnown RBP10.75□□□□□ -0.69
USP54-205ENST00000424265 ADCK5Q3MIX3 580 aa10.75□□□□□ -0.69
USP54-205ENST00000424265 KRT26Q7Z3Y9 468 aa10.75□□□□□ -0.69
USP54-205ENST00000424265 NSMCE1Q8WV22 266 aa10.75□□□□□ -0.69
USP54-205ENST00000424265 RIOK1Q9BRS2 568 aaKnown RBP10.75□□□□□ -0.69
USP54-205ENST00000424265 SH3GLB2Q9NR46 395 aa10.75□□□□□ -0.69
USP54-205ENST00000424265 IVNS1ABPQ9Y6Y0 642 aa10.75□□□□□ -0.69
USP54-205ENST00000424265 ZNF831Q5JPB2 1677 aa10.75□□□□□ -0.69
USP54-205ENST00000424265 NONOQ15233 471 aaKnown RBP eCLIP10.75□□□□□ -0.69
USP54-205ENST00000424265 SEPT7Q16181 437 aaKnown RBP10.75□□□□□ -0.69
USP54-205ENST00000424265 PPP1R18Q6NYC8 613 aa10.75□□□□□ -0.69
USP54-205ENST00000424265 NANOGNBQ7Z5D8 188 aa10.75□□□□□ -0.69
USP54-205ENST00000424265 TBC1D10CQ8IV04 446 aa10.75□□□□□ -0.69
USP54-205ENST00000424265 IGSF22Q8N9C0 903 aa10.75□□□□□ -0.69
USP54-205ENST00000424265 EPAS1Q99814 870 aa10.75□□□□□ -0.69
USP54-205ENST00000424265 NYAP2Q9P242 653 aa10.75□□□□□ -0.69
USP54-205ENST00000424265 DKC1O60832 514 aaKnown RBP eCLIP10.75□□□□□ -0.69
USP54-205ENST00000424265 UBA7P41226 1012 aa10.75□□□□□ -0.69
USP54-205ENST00000424265 RBM41Q96IZ5 413 aaKnown RBP10.75□□□□□ -0.69
USP54-205ENST00000424265 AMNQ9BXJ7 453 aa10.75□□□□□ -0.69
USP54-205ENST00000424265 IDI2Q9BXS1 227 aa10.75□□□□□ -0.69
USP54-205ENST00000424265 UBXN6Q9BZV1 441 aa10.75□□□□□ -0.69
USP54-205ENST00000424265 VCPKMTQ9H867 229 aa10.75□□□□□ -0.69
USP54-205ENST00000424265 HSF2BPO75031 334 aa10.75□□□□□ -0.69
USP54-205ENST00000424265 KLHL10Q6JEL2 608 aa10.75□□□□□ -0.69
USP54-205ENST00000424265 USP17L2Q6R6M4 530 aa10.75□□□□□ -0.69
USP54-205ENST00000424265 FBXO11Q86XK2 927 aa10.75□□□□□ -0.69
USP54-205ENST00000424265 GTF3C2Q8WUA4 911 aaPredicted RBP10.75□□□□□ -0.69
USP54-205ENST00000424265 JAKMIP2Q96AA8 810 aa10.75□□□□□ -0.69
USP54-205ENST00000424265 PRPF3O43395 683 aaKnown RBP10.74□□□□□ -0.69
USP54-205ENST00000424265 SH3BGRP55822 239 aaPredicted RBP10.74□□□□□ -0.69
USP54-205ENST00000424265 DRP2Q13474 957 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 TXNRD3Q86VQ6 643 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 SPEF2Q9C093 1822 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 TCRBV5S4A2TA0A5A2 114 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 PPP4R3AQ6IN85 833 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 CYB5D1Q6P9G0 228 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 LCA5Q86VQ0 697 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 CCDC155Q8N6L0 562 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 GOLGA8KD6RF30 607 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 KRT38O76015 456 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 TRAPPC10P48553 1259 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 PLS1Q14651 629 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 KIAA0753Q2KHM9 967 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 KRT40Q6A162 431 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 USP50Q70EL3 339 aaPredicted RBP10.74□□□□□ -0.69
USP54-205ENST00000424265 SRGAP1Q7Z6B7 1085 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 REXO1Q8N1G1 1221 aaKnown RBP10.74□□□□□ -0.69
USP54-205ENST00000424265 LPAR1Q92633 364 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 DYNLL2Q96FJ2 89 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 RHBDL2Q9NX52 303 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 MYO1AQ9UBC5 1043 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 FEM1BQ9UK73 627 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 SYNPO2Q9UMS6 1093 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 C19orf81C9J6K1 198 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 RXRAP19793 462 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 SMARCA1P28370 1054 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 STAT2P52630 851 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 CCZ1BP86790 482 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 CCZ1P86791 482 aaPredicted RBP10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms