RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 SPATA33Q96N06 139 aa9.44□□□□□ -0.9
VIM-202ENST00000421459 RAD9AQ99638 391 aa9.44□□□□□ -0.9
VIM-202ENST00000421459 PDCD2LQ9BRP1 358 aa9.44□□□□□ -0.9
VIM-202ENST00000421459 C17orf80Q9BSJ5 609 aa9.44□□□□□ -0.9
VIM-202ENST00000421459 LRFN3Q9BTN0 628 aa9.44□□□□□ -0.9
VIM-202ENST00000421459 DIAPH3Q9NSV4 1193 aa9.44□□□□□ -0.9
VIM-202ENST00000421459 MAD2L2Q9UI95 211 aa9.44□□□□□ -0.9
VIM-202ENST00000421459 COG5Q9UP83 839 aa9.44□□□□□ -0.9
VIM-202ENST00000421459 SUPT16HQ9Y5B9 1047 aaKnown RBP9.44□□□□□ -0.9
VIM-202ENST00000421459 TAF6LQ9Y6J9 622 aa9.44□□□□□ -0.9
VIM-202ENST00000421459 BDP1A6H8Y1 2624 aa9.43□□□□□ -0.9
VIM-202ENST00000421459 KLRF2D3W0D1 207 aa9.43□□□□□ -0.9
VIM-202ENST00000421459 F2P00734 622 aa9.43□□□□□ -0.9
VIM-202ENST00000421459 THPOP40225 353 aa9.43□□□□□ -0.9
VIM-202ENST00000421459 MFAP1P55081 439 aaKnown RBP9.43□□□□□ -0.9
VIM-202ENST00000421459 RBL2Q08999 1139 aa9.43□□□□□ -0.9
VIM-202ENST00000421459 IKBKEQ14164 716 aa9.43□□□□□ -0.9
VIM-202ENST00000421459 PGM5Q15124 567 aa9.43□□□□□ -0.9
VIM-202ENST00000421459 SEC23AQ15436 765 aa9.43□□□□□ -0.9
VIM-202ENST00000421459 IMMTQ16891 758 aaKnown RBP9.43□□□□□ -0.9
VIM-202ENST00000421459 CELF3Q5SZQ8 465 aaKnown RBP9.43□□□□□ -0.9
VIM-202ENST00000421459 IFIT1BQ5T764 474 aaKnown RBP9.43□□□□□ -0.9
VIM-202ENST00000421459 VSIG10LQ86VR7 867 aa9.43□□□□□ -0.9
VIM-202ENST00000421459 FCHSD1Q86WN1 690 aa9.43□□□□□ -0.9
VIM-202ENST00000421459 DBF4BQ8NFT6 615 aa9.43□□□□□ -0.9
VIM-202ENST00000421459 EXOC6Q8TAG9 804 aa9.43□□□□□ -0.9
VIM-202ENST00000421459 PIBF1Q8WXW3 757 aa9.43□□□□□ -0.9
VIM-202ENST00000421459 EMID1Q96A84 441 aaPredicted RBP9.43□□□□□ -0.9
VIM-202ENST00000421459 PIGSQ96S52 555 aa9.43□□□□□ -0.9
VIM-202ENST00000421459 C16orf70Q9BSU1 422 aa9.43□□□□□ -0.9
VIM-202ENST00000421459 DSCC1Q9BVC3 393 aa9.43□□□□□ -0.9
VIM-202ENST00000421459 AMNQ9BXJ7 453 aa9.43□□□□□ -0.9
VIM-202ENST00000421459 C11orf16Q9NQ32 467 aa9.43□□□□□ -0.9
VIM-202ENST00000421459 PCDHA1Q9Y5I3 950 aa9.43□□□□□ -0.9
VIM-202ENST00000421459 ABHD14A-ACY1A0A1B0GW23 586 aa9.42□□□□□ -0.9
VIM-202ENST00000421459 PALM3A6NDB9 673 aaPredicted RBP9.42□□□□□ -0.9
VIM-202ENST00000421459 ZBTB5O15062 677 aa9.42□□□□□ -0.9
VIM-202ENST00000421459 TREHO43280 583 aa9.42□□□□□ -0.9
VIM-202ENST00000421459 LGR5O75473 907 aa9.42□□□□□ -0.9
VIM-202ENST00000421459 CTSHP09668 335 aa9.42□□□□□ -0.9
VIM-202ENST00000421459 UBA1P22314 1058 aaKnown RBP9.42□□□□□ -0.9
VIM-202ENST00000421459 PLA2G5P39877 138 aa9.42□□□□□ -0.9
VIM-202ENST00000421459 ERVK-21P61565 698 aa9.42□□□□□ -0.9
VIM-202ENST00000421459 CCDC178Q5BJE1 867 aa9.42□□□□□ -0.9
VIM-202ENST00000421459 STOX1Q6ZVD7 989 aa9.42□□□□□ -0.9
VIM-202ENST00000421459 TICAM2Q86XR7 235 aa9.42□□□□□ -0.9
VIM-202ENST00000421459 MYOCDQ8IZQ8 938 aa9.42□□□□□ -0.9
VIM-202ENST00000421459 TET1Q8NFU7 2136 aa9.42□□□□□ -0.9
VIM-202ENST00000421459 MTMR8Q96EF0 704 aa9.42□□□□□ -0.9
VIM-202ENST00000421459 TGS1Q96RS0 853 aaKnown RBP9.42□□□□□ -0.9
VIM-202ENST00000421459 UBAC1Q9BSL1 405 aa9.42□□□□□ -0.9
VIM-202ENST00000421459 C1QTNF1Q9BXJ1 281 aa9.42□□□□□ -0.9
VIM-202ENST00000421459 RWDD1Q9H446 243 aaPredicted RBP9.42□□□□□ -0.9
VIM-202ENST00000421459 OSBPL3Q9H4L5 887 aa9.42□□□□□ -0.9
VIM-202ENST00000421459 RTEL1Q9NZ71 1219 aa9.42□□□□□ -0.9
VIM-202ENST00000421459 PTPRSQ13332 1948 aa9.42□□□□□ -0.9
VIM-202ENST00000421459 PRRC2BQ5JSZ5 2229 aaKnown RBP9.41□□□□□ -0.9
VIM-202ENST00000421459 TANC1Q9C0D5 1861 aa9.41□□□□□ -0.9
VIM-202ENST00000421459 C17orf102A2RUQ5 167 aa9.41□□□□□ -0.9
VIM-202ENST00000421459 RSPH10B2B2RC85 870 aa9.41□□□□□ -0.9
VIM-202ENST00000421459 CYTH3O43739 400 aa9.41□□□□□ -0.9
VIM-202ENST00000421459 PPFIA4O75335 1185 aa9.41□□□□□ -0.9
VIM-202ENST00000421459 UPP2O95045 317 aa9.41□□□□□ -0.9
VIM-202ENST00000421459 RSPH10BP0C881 870 aa9.41□□□□□ -0.9
VIM-202ENST00000421459 SMIM10L2AP0DMW4 78 aa9.41□□□□□ -0.9
VIM-202ENST00000421459 SMIM10L2BP0DMW5 78 aa9.41□□□□□ -0.9
VIM-202ENST00000421459 HOXD8P13378 290 aaPredicted RBP9.41□□□□□ -0.9
VIM-202ENST00000421459 KCNA5P22460 613 aa9.41□□□□□ -0.9
VIM-202ENST00000421459 PDE4AP27815 886 aa9.41□□□□□ -0.9
VIM-202ENST00000421459 MRPS9P82933 396 aaKnown RBP9.41□□□□□ -0.9
VIM-202ENST00000421459 PTH1RQ03431 593 aa9.41□□□□□ -0.9
VIM-202ENST00000421459 SEMA3FQ13275 785 aa9.41□□□□□ -0.9
VIM-202ENST00000421459 MKRN4PQ13434 485 aaPredicted RBP9.41□□□□□ -0.9
VIM-202ENST00000421459 SERINC5Q86VE9 423 aa9.41□□□□□ -0.9
VIM-202ENST00000421459 TRIM50Q86XT4 487 aa9.41□□□□□ -0.9
VIM-202ENST00000421459 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.41□□□□□ -0.9
VIM-202ENST00000421459 ATP6V0A1Q93050 837 aa9.41□□□□□ -0.9
VIM-202ENST00000421459 FAM122AQ96E09 287 aa9.41□□□□□ -0.9
VIM-202ENST00000421459 YTHDC1Q96MU7 727 aaKnown RBP9.41□□□□□ -0.9
VIM-202ENST00000421459 KATNAL1Q9BW62 490 aa9.41□□□□□ -0.9
VIM-202ENST00000421459 KRT23Q9C075 422 aa9.41□□□□□ -0.9
VIM-202ENST00000421459 RNPEPQ9H4A4 650 aa9.41□□□□□ -0.9
VIM-202ENST00000421459 UBE2ZQ9H832 354 aaPredicted RBP9.41□□□□□ -0.9
VIM-202ENST00000421459 MLXIPQ9HAP2 919 aa9.41□□□□□ -0.9
VIM-202ENST00000421459 SETD4Q9NVD3 440 aa9.41□□□□□ -0.9
VIM-202ENST00000421459 COL4A4P53420 1690 aaPredicted RBP9.4□□□□□ -0.9
VIM-202ENST00000421459 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.4□□□□□ -0.9
VIM-202ENST00000421459 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.4□□□□□ -0.9
VIM-202ENST00000421459 H3BRB1 525 aa9.4□□□□□ -0.9
VIM-202ENST00000421459 GCOM1H8Y6P7 765 aaPredicted RBP9.4□□□□□ -0.9
VIM-202ENST00000421459 LGALS2P05162 132 aa9.4□□□□□ -0.9
VIM-202ENST00000421459 POLR2MP0CAP2 368 aa9.4□□□□□ -0.9
VIM-202ENST00000421459 GSPT1P15170 499 aaKnown RBP9.4□□□□□ -0.9
VIM-202ENST00000421459 IL9P15248 144 aa9.4□□□□□ -0.9
VIM-202ENST00000421459 CCND2P30279 289 aa9.4□□□□□ -0.9
VIM-202ENST00000421459 SP4Q02446 784 aa9.4□□□□□ -0.9
VIM-202ENST00000421459 GHRHRQ02643 423 aa9.4□□□□□ -0.9
VIM-202ENST00000421459 COL9A3Q14050 684 aaPredicted RBP9.4□□□□□ -0.9
VIM-202ENST00000421459 GRM4Q14833 912 aa9.4□□□□□ -0.9
VIM-202ENST00000421459 PLEKHG4Q58EX7 1191 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms