RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 KLHDC9Q8NEP7 349 aa14.26□□□□□ -0.13
SKA1-203ENST00000417656 PHF20Q9BVI0 1012 aa14.26□□□□□ -0.13
SKA1-203ENST00000417656 AP5M1Q9H0R1 490 aa14.26□□□□□ -0.13
SKA1-203ENST00000417656 FIBPO43427 364 aa14.25□□□□□ -0.13
SKA1-203ENST00000417656 SORBS3O60504 671 aa14.25□□□□□ -0.13
SKA1-203ENST00000417656 XBP1P17861 261 aa14.25□□□□□ -0.13
SKA1-203ENST00000417656 ITGB5P18084 799 aa14.25□□□□□ -0.13
SKA1-203ENST00000417656 ARHGAP4P98171 946 aa14.25□□□□□ -0.13
SKA1-203ENST00000417656 ARHGAP1Q07960 439 aa14.25□□□□□ -0.13
SKA1-203ENST00000417656 FERMT2Q96AC1 680 aa14.25□□□□□ -0.13
SKA1-203ENST00000417656 DDX41Q9UJV9 622 aaKnown RBP14.25□□□□□ -0.13
SKA1-203ENST00000417656 PHF24Q9UPV7 400 aa14.25□□□□□ -0.13
SKA1-203ENST00000417656 Q9Y3F1 56 aa14.25□□□□□ -0.13
SKA1-203ENST00000417656 UBIAD1Q9Y5Z9 338 aa14.25□□□□□ -0.13
SKA1-203ENST00000417656 MKI67P46013 3256 aaKnown RBP14.25□□□□□ -0.13
SKA1-203ENST00000417656 A0A1W2PQ45 241 aaPredicted RBP14.24□□□□□ -0.13
SKA1-203ENST00000417656 A0A1W2PQY0 241 aa14.24□□□□□ -0.13
SKA1-203ENST00000417656 M0R2N6 131 aa14.24□□□□□ -0.13
SKA1-203ENST00000417656 GH1P01241 217 aa14.24□□□□□ -0.13
SKA1-203ENST00000417656 ICAM3P32942 547 aa14.24□□□□□ -0.13
SKA1-203ENST00000417656 ACLYP53396 1101 aa14.24□□□□□ -0.13
SKA1-203ENST00000417656 NKX3-2P78367 333 aa14.24□□□□□ -0.13
SKA1-203ENST00000417656 HMGN5P82970 282 aaKnown RBP14.24□□□□□ -0.13
SKA1-203ENST00000417656 MLLT1Q03111 559 aaPredicted RBP14.24□□□□□ -0.13
SKA1-203ENST00000417656 KCNA10Q16322 511 aa14.24□□□□□ -0.13
SKA1-203ENST00000417656 GNASQ5JWF2 1037 aa14.24□□□□□ -0.13
SKA1-203ENST00000417656 MCTP2Q6DN12 878 aa14.24□□□□□ -0.13
SKA1-203ENST00000417656 CCSAPQ6IQ19 270 aaPredicted RBP14.24□□□□□ -0.13
SKA1-203ENST00000417656 GALNT17Q6IS24 598 aa14.24□□□□□ -0.13
SKA1-203ENST00000417656 NLRX1Q86UT6 975 aa14.24□□□□□ -0.13
SKA1-203ENST00000417656 OXER1Q8TDS5 423 aa14.24□□□□□ -0.13
SKA1-203ENST00000417656 CRYGNQ8WXF5 182 aa14.24□□□□□ -0.13
SKA1-203ENST00000417656 GPRASP2Q96D09 838 aa14.24□□□□□ -0.13
SKA1-203ENST00000417656 SENP6Q9GZR1 1112 aaPredicted RBP14.24□□□□□ -0.13
SKA1-203ENST00000417656 SPATA31C2B4DYI2 1134 aa14.23□□□□□ -0.13
SKA1-203ENST00000417656 GGPS1O95749 300 aa14.23□□□□□ -0.13
SKA1-203ENST00000417656 ASGR1P07306 291 aa14.23□□□□□ -0.13
SKA1-203ENST00000417656 SP2Q02086 613 aa14.23□□□□□ -0.13
SKA1-203ENST00000417656 GUCY1B3Q02153 619 aa14.23□□□□□ -0.13
SKA1-203ENST00000417656 MTMR1Q13613 665 aa14.23□□□□□ -0.13
SKA1-203ENST00000417656 TRIM29Q14134 588 aa14.23□□□□□ -0.13
SKA1-203ENST00000417656 KRT40Q6A162 431 aa14.23□□□□□ -0.13
SKA1-203ENST00000417656 KCNV1Q6PIU1 500 aa14.23□□□□□ -0.13
SKA1-203ENST00000417656 FAM184AQ8NB25 1140 aa14.23□□□□□ -0.13
SKA1-203ENST00000417656 PCSK9Q8NBP7 692 aaKnown RBP14.23□□□□□ -0.13
SKA1-203ENST00000417656 CYP2W1Q8TAV3 490 aa14.23□□□□□ -0.13
SKA1-203ENST00000417656 AFG1LQ8WV93 481 aa14.23□□□□□ -0.13
SKA1-203ENST00000417656 MXRA8Q9BRK3 442 aa14.23□□□□□ -0.13
SKA1-203ENST00000417656 TSEN34Q9BSV6 310 aaKnown RBP14.23□□□□□ -0.13
SKA1-203ENST00000417656 JADE2Q9NQC1 790 aa14.23□□□□□ -0.13
SKA1-203ENST00000417656 PKD2L1Q9P0L9 805 aa14.23□□□□□ -0.13
SKA1-203ENST00000417656 MOXD2PA6NHM9 499 aa14.22□□□□□ -0.13
SKA1-203ENST00000417656 MMP1P03956 469 aa14.22□□□□□ -0.13
SKA1-203ENST00000417656 KRT2P35908 639 aa14.22□□□□□ -0.13
SKA1-203ENST00000417656 ZNF76P36508 570 aa14.22□□□□□ -0.13
SKA1-203ENST00000417656 CPT1AP50416 773 aa14.22□□□□□ -0.13
SKA1-203ENST00000417656 ATN1P54259 1190 aaPredicted RBP14.22□□□□□ -0.13
SKA1-203ENST00000417656 CEP55Q53EZ4 464 aa14.22□□□□□ -0.13
SKA1-203ENST00000417656 CXCL17Q6UXB2 119 aa14.22□□□□□ -0.13
SKA1-203ENST00000417656 KRT25Q7Z3Z0 450 aa14.22□□□□□ -0.13
SKA1-203ENST00000417656 DHX37Q8IY37 1157 aaKnown RBP14.22□□□□□ -0.13
SKA1-203ENST00000417656 C8orf76Q96K31 380 aa14.22□□□□□ -0.13
SKA1-203ENST00000417656 HTATIP2Q9BUP3 242 aa14.22□□□□□ -0.13
SKA1-203ENST00000417656 BCAS3Q9H6U6 928 aa14.22□□□□□ -0.13
SKA1-203ENST00000417656 BRMS1Q9HCU9 246 aa14.22□□□□□ -0.13
SKA1-203ENST00000417656 TNRC18O15417 2968 aaPredicted RBP14.21□□□□□ -0.13
SKA1-203ENST00000417656 CCDC194A0A1B0GVG4 234 aa14.21□□□□□ -0.13
SKA1-203ENST00000417656 FAM205CA6NFA0 338 aa14.21□□□□□ -0.13
SKA1-203ENST00000417656 FAM86B1E9PN63 330 aa14.21□□□□□ -0.13
SKA1-203ENST00000417656 ZEB2O60315 1214 aa14.21□□□□□ -0.13
SKA1-203ENST00000417656 MMP3P08254 477 aa14.21□□□□□ -0.13
SKA1-203ENST00000417656 MYL3P08590 195 aa14.21□□□□□ -0.13
SKA1-203ENST00000417656 CYP3A4P08684 503 aa14.21□□□□□ -0.13
SKA1-203ENST00000417656 FAM86B2P0C5J1 330 aa14.21□□□□□ -0.13
SKA1-203ENST00000417656 TGFB3P10600 412 aa14.21□□□□□ -0.13
SKA1-203ENST00000417656 KCNA2P16389 499 aa14.21□□□□□ -0.13
SKA1-203ENST00000417656 NR5A1Q13285 461 aa14.21□□□□□ -0.13
SKA1-203ENST00000417656 NONOQ15233 471 aaKnown RBP eCLIP14.21□□□□□ -0.13
SKA1-203ENST00000417656 LRRC26Q2I0M4 334 aa14.21□□□□□ -0.13
SKA1-203ENST00000417656 CELF3Q5SZQ8 465 aaKnown RBP14.21□□□□□ -0.13
SKA1-203ENST00000417656 DIS3L2Q8IYB7 885 aaKnown RBP14.21□□□□□ -0.13
SKA1-203ENST00000417656 TBCKQ8TEA7 893 aa14.21□□□□□ -0.13
SKA1-203ENST00000417656 EMID1Q96A84 441 aaPredicted RBP14.21□□□□□ -0.13
SKA1-203ENST00000417656 CDHR1Q96JP9 859 aa14.21□□□□□ -0.13
SKA1-203ENST00000417656 SPATA33Q96N06 139 aa14.21□□□□□ -0.13
SKA1-203ENST00000417656 STARD7Q9NQZ5 370 aa14.21□□□□□ -0.13
SKA1-203ENST00000417656 SCN10AQ9Y5Y9 1956 aa14.2□□□□□ -0.14
SKA1-203ENST00000417656 IGLV3-22A0A075B6J6 115 aa14.2□□□□□ -0.14
SKA1-203ENST00000417656 A6NJR5 290 aa14.2□□□□□ -0.14
SKA1-203ENST00000417656 EDIL3O43854 480 aa14.2□□□□□ -0.14
SKA1-203ENST00000417656 ATP9AO75110 1047 aa14.2□□□□□ -0.14
SKA1-203ENST00000417656 GABBR2O75899 941 aa14.2□□□□□ -0.14
SKA1-203ENST00000417656 ARP10275 920 aa14.2□□□□□ -0.14
SKA1-203ENST00000417656 PURAQ00577 322 aaKnown RBP14.2□□□□□ -0.14
SKA1-203ENST00000417656 SP4Q02446 784 aa14.2□□□□□ -0.14
SKA1-203ENST00000417656 CUL4AQ13619 759 aa14.2□□□□□ -0.14
SKA1-203ENST00000417656 LAMC2Q13753 1193 aa14.2□□□□□ -0.14
SKA1-203ENST00000417656 NEDD9Q14511 834 aa14.2□□□□□ -0.14
SKA1-203ENST00000417656 INF2Q27J81 1249 aa14.2□□□□□ -0.14
SKA1-203ENST00000417656 BRDTQ58F21 947 aaPredicted RBP14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms