RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 WHAMMQ8TF30 809 aa16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 GJD4Q96KN9 370 aaPredicted RBP16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 NOX5Q96PH1 765 aa16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 FAM167BQ9BTA0 163 aa16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 TTYH3Q9C0H2 523 aa16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 SLC39A2Q9NP94 309 aa16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 CPSF2Q9P2I0 782 aaKnown RBP16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 RIC1Q4ADV7 1423 aa16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 MINDY4BA8MYZ0 360 aa16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 KIF4AO95239 1232 aa16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 PPP2R2AP63151 447 aa16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 SNX1Q13596 522 aa16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 THEMIS2Q5TEJ8 643 aa16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 CHADLQ6NUI6 762 aa16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 PIK3AP1Q6ZUJ8 805 aa16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 ZNF572Q7Z3I7 529 aaPredicted RBP16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 CD302Q8IX05 232 aa16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 SEPT12Q8IYM1 358 aa16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 ZNF654Q8IZM8 581 aa16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 CERKQ8TCT0 537 aa16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 SLC12A6Q9UHW9 1150 aa16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 TACC3Q9Y6A5 838 aa16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 IGHMBP2P38935 993 aaKnown RBP16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 EHHADHQ08426 723 aa16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 KLHDC7AQ5VTJ3 777 aa16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 TMED8Q6PL24 325 aaPredicted RBP16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 CCT6BQ92526 530 aa16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 GGT7Q9UJ14 662 aa16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 C15orf41Q9Y2V0 281 aa16.18■□□□□ 0.18
NCKIPSD-204ENST00000416649 EPHB6O15197 1021 aa16.17■□□□□ 0.18
NCKIPSD-204ENST00000416649 KRT71Q3SY84 523 aa16.17■□□□□ 0.18
NCKIPSD-204ENST00000416649 CCDC152Q4G0S7 254 aa16.17■□□□□ 0.18
NCKIPSD-204ENST00000416649 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.17■□□□□ 0.18
NCKIPSD-204ENST00000416649 TRIM37O94972 964 aa16.17■□□□□ 0.18
NCKIPSD-204ENST00000416649 SLC1A4P43007 532 aa16.17■□□□□ 0.18
NCKIPSD-204ENST00000416649 CCDC178Q5BJE1 867 aa16.17■□□□□ 0.18
NCKIPSD-204ENST00000416649 MAB21L3Q8N8X9 362 aa16.17■□□□□ 0.18
NCKIPSD-204ENST00000416649 TATDN2Q93075 761 aa16.17■□□□□ 0.18
NCKIPSD-204ENST00000416649 TAF1DQ9H5J8 278 aaPredicted RBP16.17■□□□□ 0.18
NCKIPSD-204ENST00000416649 THAP9Q9H5L6 903 aa16.17■□□□□ 0.18
NCKIPSD-204ENST00000416649 ABCF2Q9UG63 623 aa16.17■□□□□ 0.18
NCKIPSD-204ENST00000416649 NRAPQ86VF7 1730 aa16.17■□□□□ 0.18
NCKIPSD-204ENST00000416649 PP2D1A8MPX8 630 aa16.16■□□□□ 0.18
NCKIPSD-204ENST00000416649 CTNND1O60716 968 aaKnown RBP16.16■□□□□ 0.18
NCKIPSD-204ENST00000416649 GYG1P46976 350 aa16.16■□□□□ 0.18
NCKIPSD-204ENST00000416649 ZNF844Q08AG5 666 aa16.16■□□□□ 0.18
NCKIPSD-204ENST00000416649 AKNAD1Q5T1N1 836 aa16.16■□□□□ 0.18
NCKIPSD-204ENST00000416649 NBPF5PQ86XG9 351 aaPredicted RBP16.16■□□□□ 0.18
NCKIPSD-204ENST00000416649 IFNL3Q8IZI9 196 aa16.16■□□□□ 0.18
NCKIPSD-204ENST00000416649 VGLL2Q8N8G2 317 aa16.16■□□□□ 0.18
NCKIPSD-204ENST00000416649 ZNF652Q9Y2D9 606 aa16.16■□□□□ 0.18
NCKIPSD-204ENST00000416649 ECM29Q5VYK3 1845 aa16.16■□□□□ 0.18
NCKIPSD-204ENST00000416649 CYP2D7A0A087X1C5 515 aa16.16■□□□□ 0.18
NCKIPSD-204ENST00000416649 KLHL33A6NCF5 533 aa16.16■□□□□ 0.18
NCKIPSD-204ENST00000416649 PALMO75781 387 aa16.16■□□□□ 0.18
NCKIPSD-204ENST00000416649 MBD4O95243 580 aa16.16■□□□□ 0.18
NCKIPSD-204ENST00000416649 EVX2Q03828 476 aa16.16■□□□□ 0.18
NCKIPSD-204ENST00000416649 CHRNDQ07001 517 aa16.16■□□□□ 0.18
NCKIPSD-204ENST00000416649 EMC10Q5UCC4 262 aa16.16■□□□□ 0.18
NCKIPSD-204ENST00000416649 MAEAQ7L5Y9 396 aa16.16■□□□□ 0.18
NCKIPSD-204ENST00000416649 MREGQ8N565 214 aa16.16■□□□□ 0.18
NCKIPSD-204ENST00000416649 CCDC197Q8NCU1 140 aa16.16■□□□□ 0.18
NCKIPSD-204ENST00000416649 AGAP11Q8TF27 550 aa16.16■□□□□ 0.18
NCKIPSD-204ENST00000416649 LPIN2Q92539 896 aa16.16■□□□□ 0.18
NCKIPSD-204ENST00000416649 PANK4Q9NVE7 773 aa16.16■□□□□ 0.18
NCKIPSD-204ENST00000416649 DNAJC8O75937 253 aaPredicted RBP16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 PDE6AP16499 860 aa16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 NBPF20Q3BBV1 942 aa16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 RUFY4Q6ZNE9 571 aa16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 RETREG2Q8NC44 543 aa16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 ZNF526Q8TF50 670 aaPredicted RBP16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 CELF1Q92879 486 aaKnown RBP16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 CCDC47Q96A33 483 aaKnown RBP16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 EPB41L4AQ9HCS5 686 aaPredicted RBP16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 BATF3Q9NR55 127 aa16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 TAF1P21675 1872 aa16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 CCT8L1PA6NM43 557 aa16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 LRRC53A6NM62 1247 aa16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 BMP15O95972 392 aa16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 ADCY2Q08462 1091 aa16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 RASGRF1Q13972 1273 aa16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 RBBP5Q15291 538 aaKnown RBP16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 PUM3Q15397 648 aaKnown RBP16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 FAM196AQ6ZSG2 479 aa16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 ARHGEF1Q92888 912 aaKnown RBP16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 SELENOSQ9BQE4 189 aa16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 QTRT2Q9H974 415 aaKnown RBP16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 ETAA1Q9NY74 926 aa16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 FBXL5Q9UKA1 691 aa16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 SMIM23A6NLE4 172 aa16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 HSPA9P38646 679 aaKnown RBP16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 IL17AQ16552 155 aa16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 LACTB2Q53H82 288 aaPredicted RBP16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 ANKS4BQ8N8V4 417 aa16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 SETDB2Q96T68 719 aa16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 KRT23Q9C075 422 aa16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 PLCB1Q9NQ66 1216 aa16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 RTCBQ9Y3I0 505 aaKnown RBP16.15■□□□□ 0.18
NCKIPSD-204ENST00000416649 HGSO14964 777 aaPredicted RBP16.14■□□□□ 0.17
NCKIPSD-204ENST00000416649 ERVK-9P63128 1117 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms