RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 SCNN1BP51168 640 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 POU4F3Q15319 338 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 PCBP2Q15366 365 aaKnown RBP eCLIP3.17□□□□□ -1.9
MCF2-204ENST00000414978 C1orf228Q6PIY5 440 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 ZC3H7AQ8IWR0 971 aaKnown RBP3.17□□□□□ -1.9
MCF2-204ENST00000414978 TMEM102Q8N9M5 508 aaPredicted RBP3.17□□□□□ -1.9
MCF2-204ENST00000414978 OR10H5Q8NGA6 315 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 SCLYQ96I15 445 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 NEUROD6Q96NK8 337 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 ORAI2Q96SN7 254 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 KCNJ15Q99712 375 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 PHAXQ9H814 394 aaKnown RBP3.17□□□□□ -1.9
MCF2-204ENST00000414978 PUF60Q9UHX1 559 aaKnown RBP3.17□□□□□ -1.9
MCF2-204ENST00000414978 HIF3AQ9Y2N7 669 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 USP19O94966 1318 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 CRB1P82279 1406 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 PRRT4C9JH25 899 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 APAF1O14727 1248 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 DLGAP3O95886 979 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 SNRPB2P08579 225 aaKnown RBP3.17□□□□□ -1.9
MCF2-204ENST00000414978 HMGB2P26583 209 aaKnown RBP3.17□□□□□ -1.9
MCF2-204ENST00000414978 GTF2A2P52657 109 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 RPS26P62854 115 aaKnown RBP3.17□□□□□ -1.9
MCF2-204ENST00000414978 ZNF267Q14586 743 aaPredicted RBP3.17□□□□□ -1.9
MCF2-204ENST00000414978 CCDC96Q2M329 555 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 TRIM67Q6ZTA4 783 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 TRIM46Q7Z4K8 759 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 IGSF22Q8N9C0 903 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 E2F7Q96AV8 911 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 ORAI3Q9BRQ5 295 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 CRISPLD1Q9H336 500 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 DACH1Q9UI36 760 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 LZTS1Q9Y250 596 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 DIS3Q9Y2L1 958 aaKnown RBP3.17□□□□□ -1.9
MCF2-204ENST00000414978 NRXN2Q9P2S2 1712 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 COL5A3P25940 1745 aaPredicted RBP3.16□□□□□ -1.9
MCF2-204ENST00000414978 CLEC3AO75596 197 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 RGS9O75916 674 aaPredicted RBP3.16□□□□□ -1.9
MCF2-204ENST00000414978 ADH7P40394 386 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 USP14P54578 494 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 HDAC1Q13547 482 aaPredicted RBP3.16□□□□□ -1.9
MCF2-204ENST00000414978 GRM3Q14832 879 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 ODF1Q14990 250 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 CREB3L3Q68CJ9 461 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 FIGNL1Q6PIW4 674 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 PDZD3Q86UT5 571 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 DDX17Q92841 729 aaKnown RBP3.16□□□□□ -1.9
MCF2-204ENST00000414978 MAGEB10Q96LZ2 347 aaPredicted RBP3.16□□□□□ -1.9
MCF2-204ENST00000414978 ANLNQ9NQW6 1124 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 MKS1Q9NXB0 559 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 AKT3Q9Y243 479 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 hCG_1642624A0A1W2PR95 340 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 IQCA1LA6NCM1 817 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 SPDYE3A6NKU9 549 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 EFSO43281 561 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 GDF9O60383 454 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 SNUPNO95149 360 aaKnown RBP3.16□□□□□ -1.9
MCF2-204ENST00000414978 IL33O95760 270 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 ITGBL1O95965 494 aaPredicted RBP3.16□□□□□ -1.9
MCF2-204ENST00000414978 FGFR3P22607 806 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 CCT2P78371 535 aaKnown RBP3.16□□□□□ -1.9
MCF2-204ENST00000414978 GPLD1P80108 840 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 PDE4BQ07343 736 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 HLTFQ14527 1009 aaKnown RBP eCLIP3.16□□□□□ -1.9
MCF2-204ENST00000414978 HSP90AA2PQ14568 343 aaPredicted RBP3.16□□□□□ -1.9
MCF2-204ENST00000414978 NCAPHQ15003 741 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 TRIM61Q5EBN2 209 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 PRAMEF13Q5VWM6 474 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 SLC6A19Q695T7 634 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 ABHD17CQ6PCB6 329 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 RINLQ6ZS11 566 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 SYDE1Q6ZW31 735 aaPredicted RBP3.16□□□□□ -1.9
MCF2-204ENST00000414978 PASD1Q8IV76 773 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 SLX1AQ9BQ83 275 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 EIF2AK1Q9BQI3 630 aaKnown RBP3.16□□□□□ -1.9
MCF2-204ENST00000414978 TOR4AQ9NXH8 423 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 LTBP1Q14766 1721 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 LTN1O94822 1766 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 SCN4AP35499 1836 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 RASSF10A6NK89 507 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 CPEP16870 476 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 BPIP17213 487 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 NRLP54845 237 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 MPNDQ8N594 471 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 LUC7LQ9NQ29 371 aaKnown RBP3.16□□□□□ -1.9
MCF2-204ENST00000414978 PRDM6Q9NQX0 595 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 SAMD15Q9P1V8 674 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 GPR52Q9Y2T5 361 aa3.16□□□□□ -1.9
MCF2-204ENST00000414978 LOC101059915A0A1B0GWI6 518 aaPredicted RBP3.15□□□□□ -1.9
MCF2-204ENST00000414978 ZRANB2O95218 330 aaKnown RBP eCLIP3.15□□□□□ -1.9
MCF2-204ENST00000414978 KRT15P19012 456 aa3.15□□□□□ -1.9
MCF2-204ENST00000414978 SARSP49591 514 aaKnown RBP3.15□□□□□ -1.9
MCF2-204ENST00000414978 ZNF252P-AS1Q0IIN9 211 aa3.15□□□□□ -1.9
MCF2-204ENST00000414978 PICALMQ13492 652 aa3.15□□□□□ -1.9
MCF2-204ENST00000414978 KIAA1614Q5VZ46 1190 aa3.15□□□□□ -1.9
MCF2-204ENST00000414978 DYMQ7RTS9 669 aa3.15□□□□□ -1.9
MCF2-204ENST00000414978 ANKRD42Q8N9B4 389 aa3.15□□□□□ -1.9
MCF2-204ENST00000414978 TMEM145Q8NBT3 493 aa3.15□□□□□ -1.9
MCF2-204ENST00000414978 SECISBP2LQ93073 1101 aaKnown RBP3.15□□□□□ -1.9
MCF2-204ENST00000414978 EHMT1Q9H9B1 1298 aa3.15□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms