RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 EHMT1Q9H9B1 1298 aa12.77□□□□□ -0.37
LINC00539-201ENST00000411525 HOMER2Q9NSB8 354 aa12.77□□□□□ -0.37
LINC00539-201ENST00000411525 RNF146Q9NTX7 359 aa12.77□□□□□ -0.37
LINC00539-201ENST00000411525 DACT1Q9NYF0 836 aa12.77□□□□□ -0.37
LINC00539-201ENST00000411525 IVNS1ABPQ9Y6Y0 642 aa12.77□□□□□ -0.37
LINC00539-201ENST00000411525 A0A1B0GVL5 298 aa12.76□□□□□ -0.37
LINC00539-201ENST00000411525 EDIL3O43854 480 aa12.76□□□□□ -0.37
LINC00539-201ENST00000411525 MSCO60682 206 aa12.76□□□□□ -0.37
LINC00539-201ENST00000411525 TDP2O95551 362 aa12.76□□□□□ -0.37
LINC00539-201ENST00000411525 OR52Z1P0C646 297 aa12.76□□□□□ -0.37
LINC00539-201ENST00000411525 PFKFB1P16118 471 aa12.76□□□□□ -0.37
LINC00539-201ENST00000411525 PRPHP41219 470 aa12.76□□□□□ -0.37
LINC00539-201ENST00000411525 MNX1P50219 401 aaPredicted RBP12.76□□□□□ -0.37
LINC00539-201ENST00000411525 USP11P51784 963 aa12.76□□□□□ -0.37
LINC00539-201ENST00000411525 ARHGAP4P98171 946 aa12.76□□□□□ -0.37
LINC00539-201ENST00000411525 GRIN1Q05586 938 aa12.76□□□□□ -0.37
LINC00539-201ENST00000411525 MAP2K5Q13163 448 aa12.76□□□□□ -0.37
LINC00539-201ENST00000411525 TKFCQ3LXA3 575 aa12.76□□□□□ -0.37
LINC00539-201ENST00000411525 ZSCAN23Q3MJ62 389 aa12.76□□□□□ -0.37
LINC00539-201ENST00000411525 MUM1L1Q5H9M0 696 aa12.76□□□□□ -0.37
LINC00539-201ENST00000411525 MFSD14CQ5VZR4 134 aa12.76□□□□□ -0.37
LINC00539-201ENST00000411525 MOXD1Q6UVY6 613 aa12.76□□□□□ -0.37
LINC00539-201ENST00000411525 FCHSD1Q86WN1 690 aa12.76□□□□□ -0.37
LINC00539-201ENST00000411525 POTEDQ86YR6 584 aa12.76□□□□□ -0.37
LINC00539-201ENST00000411525 CRYGNQ8WXF5 182 aa12.76□□□□□ -0.37
LINC00539-201ENST00000411525 NUP62CLQ9H1M0 184 aa12.76□□□□□ -0.37
LINC00539-201ENST00000411525 TMEM60Q9H2L4 133 aa12.76□□□□□ -0.37
LINC00539-201ENST00000411525 ZMYND8Q9ULU4 1186 aaPredicted RBP12.76□□□□□ -0.37
LINC00539-201ENST00000411525 VWA3AA6NCI4 1184 aa12.75□□□□□ -0.37
LINC00539-201ENST00000411525 SLC15A5A6NIM6 579 aa12.75□□□□□ -0.37
LINC00539-201ENST00000411525 SLC37A4O43826 429 aa12.75□□□□□ -0.37
LINC00539-201ENST00000411525 KINO60870 393 aaKnown RBP12.75□□□□□ -0.37
LINC00539-201ENST00000411525 NDUFA8P51970 172 aa12.75□□□□□ -0.37
LINC00539-201ENST00000411525 SNW1Q13573 536 aaKnown RBP12.75□□□□□ -0.37
LINC00539-201ENST00000411525 WDR78Q5VTH9 848 aa12.75□□□□□ -0.37
LINC00539-201ENST00000411525 FMR1NBQ8N0W7 255 aaPredicted RBP12.75□□□□□ -0.37
LINC00539-201ENST00000411525 ENGASEQ8NFI3 743 aa12.75□□□□□ -0.37
LINC00539-201ENST00000411525 TBC1D5Q92609 795 aa12.75□□□□□ -0.37
LINC00539-201ENST00000411525 CSRNP2Q9H175 543 aa12.75□□□□□ -0.37
LINC00539-201ENST00000411525 CLSTN2Q9H4D0 955 aa12.75□□□□□ -0.37
LINC00539-201ENST00000411525 FAM13BQ9NYF5 915 aa12.75□□□□□ -0.37
LINC00539-201ENST00000411525 MAP3K20Q9NYL2 800 aaKnown RBP12.75□□□□□ -0.37
LINC00539-201ENST00000411525 DDX25Q9UHL0 483 aaKnown RBP12.75□□□□□ -0.37
LINC00539-201ENST00000411525 HPSEQ9Y251 543 aa12.75□□□□□ -0.37
LINC00539-201ENST00000411525 RIPK3Q9Y572 518 aa12.75□□□□□ -0.37
LINC00539-201ENST00000411525 ZNFX1Q9P2E3 1918 aaKnown RBP12.74□□□□□ -0.37
LINC00539-201ENST00000411525 PFASO15067 1338 aa12.74□□□□□ -0.37
LINC00539-201ENST00000411525 CYP3A7-CYP3A51PA0A087WV96 503 aa12.74□□□□□ -0.37
LINC00539-201ENST00000411525 PEX10O60683 326 aa12.74□□□□□ -0.37
LINC00539-201ENST00000411525 CYP3A4P08684 503 aa12.74□□□□□ -0.37
LINC00539-201ENST00000411525 HOXC6P09630 235 aa12.74□□□□□ -0.37
LINC00539-201ENST00000411525 COL6A1P12109 1028 aa12.74□□□□□ -0.37
LINC00539-201ENST00000411525 CYP3A7P24462 503 aa12.74□□□□□ -0.37
LINC00539-201ENST00000411525 LONP1P36776 959 aaKnown RBP12.74□□□□□ -0.37
LINC00539-201ENST00000411525 STAT3P40763 770 aa12.74□□□□□ -0.37
LINC00539-201ENST00000411525 PLS1Q14651 629 aa12.74□□□□□ -0.37
LINC00539-201ENST00000411525 IL17AQ16552 155 aa12.74□□□□□ -0.37
LINC00539-201ENST00000411525 CALCRLQ16602 461 aa12.74□□□□□ -0.37
LINC00539-201ENST00000411525 LRIT3Q3SXY7 679 aa12.74□□□□□ -0.37
LINC00539-201ENST00000411525 LHX8Q68G74 356 aa12.74□□□□□ -0.37
LINC00539-201ENST00000411525 SLC30A10Q6XR72 485 aa12.74□□□□□ -0.37
LINC00539-201ENST00000411525 DTHD1Q6ZMT9 781 aa12.74□□□□□ -0.37
LINC00539-201ENST00000411525 TDHQ8IZJ6 230 aa12.74□□□□□ -0.37
LINC00539-201ENST00000411525 SLC17A8Q8NDX2 589 aa12.74□□□□□ -0.37
LINC00539-201ENST00000411525 LRCH3Q96II8 777 aa12.74□□□□□ -0.37
LINC00539-201ENST00000411525 MBOAT7Q96N66 472 aa12.74□□□□□ -0.37
LINC00539-201ENST00000411525 UBE2OQ9C0C9 1292 aaKnown RBP12.74□□□□□ -0.37
LINC00539-201ENST00000411525 MAF1Q9H063 256 aa12.74□□□□□ -0.37
LINC00539-201ENST00000411525 ACAD9Q9H845 621 aa12.74□□□□□ -0.37
LINC00539-201ENST00000411525 COL20A1Q9P218 1284 aa12.74□□□□□ -0.37
LINC00539-201ENST00000411525 FRMPD4Q14CM0 1322 aa12.73□□□□□ -0.37
LINC00539-201ENST00000411525 SOX1O00570 391 aaPredicted RBP12.73□□□□□ -0.37
LINC00539-201ENST00000411525 STRNO43815 780 aa12.73□□□□□ -0.37
LINC00539-201ENST00000411525 CNMDO75829 334 aa12.73□□□□□ -0.37
LINC00539-201ENST00000411525 LETM1O95202 739 aaPredicted RBP12.73□□□□□ -0.37
LINC00539-201ENST00000411525 SYN1P17600 705 aa12.73□□□□□ -0.37
LINC00539-201ENST00000411525 CCND3P30281 292 aaPredicted RBP12.73□□□□□ -0.37
LINC00539-201ENST00000411525 CIITAP33076 1130 aa12.73□□□□□ -0.37
LINC00539-201ENST00000411525 MAGEA10P43363 369 aaPredicted RBP12.73□□□□□ -0.37
LINC00539-201ENST00000411525 SYKP43405 635 aa12.73□□□□□ -0.37
LINC00539-201ENST00000411525 ZNF445P59923 1031 aa12.73□□□□□ -0.37
LINC00539-201ENST00000411525 CCL14Q16627 93 aa12.73□□□□□ -0.37
LINC00539-201ENST00000411525 SPECC1Q5M775 1068 aa12.73□□□□□ -0.37
LINC00539-201ENST00000411525 POTEEQ6S8J3 1075 aa12.73□□□□□ -0.37
LINC00539-201ENST00000411525 NSMFQ6X4W1 530 aa12.73□□□□□ -0.37
LINC00539-201ENST00000411525 RNF207Q6ZRF8 634 aa12.73□□□□□ -0.37
LINC00539-201ENST00000411525 RIOX2Q8IUF8 465 aa12.73□□□□□ -0.37
LINC00539-201ENST00000411525 CHST13Q8NET6 341 aa12.73□□□□□ -0.37
LINC00539-201ENST00000411525 SYTL5Q8TDW5 730 aaPredicted RBP12.73□□□□□ -0.37
LINC00539-201ENST00000411525 SYMPKQ92797 1274 aaKnown RBP12.73□□□□□ -0.37
LINC00539-201ENST00000411525 MTMR9Q96QG7 549 aa12.73□□□□□ -0.37
LINC00539-201ENST00000411525 SPATC1LQ9H0A9 340 aa12.73□□□□□ -0.37
LINC00539-201ENST00000411525 TNMDQ9H2S6 317 aa12.73□□□□□ -0.37
LINC00539-201ENST00000411525 BTBD7Q9P203 1132 aa12.73□□□□□ -0.37
LINC00539-201ENST00000411525 LAMA2P24043 3122 aaKnown RBP12.73□□□□□ -0.37
LINC00539-201ENST00000411525 LCTP09848 1927 aa12.72□□□□□ -0.37
LINC00539-201ENST00000411525 SYCE3A1L190 88 aa12.72□□□□□ -0.37
LINC00539-201ENST00000411525 CTAGE5O15320 804 aa12.72□□□□□ -0.37
LINC00539-201ENST00000411525 ZNF202O95125 648 aa12.72□□□□□ -0.37
LINC00539-201ENST00000411525 COPB2P35606 906 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms