RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 C16orf86Q6ZW13 317 aa8.35□□□□□ -1.07
USP40-202ENST00000409945 SYTL5Q8TDW5 730 aaPredicted RBP8.35□□□□□ -1.07
USP40-202ENST00000409945 C1orf159Q96HA4 380 aa8.35□□□□□ -1.07
USP40-202ENST00000409945 SGSM3Q96HU1 749 aa8.35□□□□□ -1.07
USP40-202ENST00000409945 SPOCK3Q9BQ16 436 aa8.35□□□□□ -1.07
USP40-202ENST00000409945 AARSD1Q9BTE6 412 aaKnown RBP8.35□□□□□ -1.07
USP40-202ENST00000409945 CHST7Q9NS84 486 aa8.35□□□□□ -1.07
USP40-202ENST00000409945 KIF7Q2M1P5 1343 aa8.35□□□□□ -1.07
USP40-202ENST00000409945 PARD3Q8TEW0 1356 aa8.35□□□□□ -1.07
USP40-202ENST00000409945 DLX3O60479 287 aa8.35□□□□□ -1.07
USP40-202ENST00000409945 C6orf222P0C671 652 aaPredicted RBP8.35□□□□□ -1.07
USP40-202ENST00000409945 IFNGR1P15260 489 aa8.35□□□□□ -1.07
USP40-202ENST00000409945 HOXA10P31260 410 aaPredicted RBP8.35□□□□□ -1.07
USP40-202ENST00000409945 TMEM67Q5HYA8 995 aa8.35□□□□□ -1.07
USP40-202ENST00000409945 TNS2Q63HR2 1409 aa8.34□□□□□ -1.07
USP40-202ENST00000409945 STXBP3O00186 592 aa8.34□□□□□ -1.07
USP40-202ENST00000409945 PABPC1P11940 636 aaKnown RBP8.34□□□□□ -1.07
USP40-202ENST00000409945 TNNT2P45379 298 aaPredicted RBP8.34□□□□□ -1.07
USP40-202ENST00000409945 NTRK3Q16288 839 aa8.34□□□□□ -1.07
USP40-202ENST00000409945 TMEM145Q8NBT3 493 aa8.34□□□□□ -1.07
USP40-202ENST00000409945 HSPA12BQ96MM6 686 aa8.34□□□□□ -1.07
USP40-202ENST00000409945 DBNDD2Q9BQY9 259 aa8.34□□□□□ -1.07
USP40-202ENST00000409945 WNK3Q9BYP7 1800 aa8.34□□□□□ -1.07
USP40-202ENST00000409945 FSTP19883 344 aa8.33□□□□□ -1.08
USP40-202ENST00000409945 CYP7A1P22680 504 aa8.33□□□□□ -1.08
USP40-202ENST00000409945 HMGB2P26583 209 aaKnown RBP8.33□□□□□ -1.08
USP40-202ENST00000409945 DEFB132Q7Z7B7 95 aa8.33□□□□□ -1.08
USP40-202ENST00000409945 ZDHHC13Q8IUH4 622 aa8.33□□□□□ -1.08
USP40-202ENST00000409945 ZSWIM2Q8NEG5 633 aa8.33□□□□□ -1.08
USP40-202ENST00000409945 FAM126AQ9BYI3 521 aaPredicted RBP8.33□□□□□ -1.08
USP40-202ENST00000409945 GPRC5CQ9NQ84 441 aa8.33□□□□□ -1.08
USP40-202ENST00000409945 ANKRD26Q9UPS8 1709 aa8.33□□□□□ -1.08
USP40-202ENST00000409945 LRRC37A3O60309 1634 aa8.33□□□□□ -1.08
USP40-202ENST00000409945 DISP2A7MBM2 1401 aa8.33□□□□□ -1.08
USP40-202ENST00000409945 IQCA1LA6NCM1 817 aa8.33□□□□□ -1.08
USP40-202ENST00000409945 H3BS24 57 aa8.33□□□□□ -1.08
USP40-202ENST00000409945 IGF2BP3O00425 579 aaKnown RBP eCLIP8.33□□□□□ -1.08
USP40-202ENST00000409945 CD96P40200 585 aa8.33□□□□□ -1.08
USP40-202ENST00000409945 HSP90AA2PQ14568 343 aaPredicted RBP8.33□□□□□ -1.08
USP40-202ENST00000409945 HSP90AB2PQ58FF8 381 aa8.33□□□□□ -1.08
USP40-202ENST00000409945 ZPBP2Q6X784 338 aa8.33□□□□□ -1.08
USP40-202ENST00000409945 C22orf34Q6ZV56 151 aa8.33□□□□□ -1.08
USP40-202ENST00000409945 ZCRB1Q8TBF4 217 aaKnown RBP8.33□□□□□ -1.08
USP40-202ENST00000409945 DSCC1Q9BVC3 393 aa8.33□□□□□ -1.08
USP40-202ENST00000409945 NCOA5Q9HCD5 579 aaKnown RBP8.33□□□□□ -1.08
USP40-202ENST00000409945 GTF2IRD1Q9UHL9 959 aa8.33□□□□□ -1.08
USP40-202ENST00000409945 WASHC2AQ641Q2 1341 aa8.32□□□□□ -1.08
USP40-202ENST00000409945 TRAV20A0A0B4J274 112 aa8.32□□□□□ -1.08
USP40-202ENST00000409945 PRR19A6NJB7 356 aa8.32□□□□□ -1.08
USP40-202ENST00000409945 IRS4O14654 1257 aaPredicted RBP8.32□□□□□ -1.08
USP40-202ENST00000409945 FBLN1P23142 703 aa8.32□□□□□ -1.08
USP40-202ENST00000409945 GFRA1P56159 465 aa8.32□□□□□ -1.08
USP40-202ENST00000409945 TMEM151AQ8N4L1 468 aa8.32□□□□□ -1.08
USP40-202ENST00000409945 TCTN2Q96GX1 697 aa8.32□□□□□ -1.08
USP40-202ENST00000409945 FEZ1Q99689 392 aa8.32□□□□□ -1.08
USP40-202ENST00000409945 CDC6Q99741 560 aa8.32□□□□□ -1.08
USP40-202ENST00000409945 DHRS4Q9BTZ2 278 aa8.32□□□□□ -1.08
USP40-202ENST00000409945 NKX2-4Q9H2Z4 354 aa8.32□□□□□ -1.08
USP40-202ENST00000409945 BCL9O00512 1426 aa8.31□□□□□ -1.08
USP40-202ENST00000409945 TRBV23-1A0A0A0MS06 115 aa8.31□□□□□ -1.08
USP40-202ENST00000409945 AGRPO00253 132 aa8.31□□□□□ -1.08
USP40-202ENST00000409945 IGLV1-40P01703 118 aa8.31□□□□□ -1.08
USP40-202ENST00000409945 KIR3DL1P43629 444 aa8.31□□□□□ -1.08
USP40-202ENST00000409945 CYP27C1Q4G0S4 372 aa8.31□□□□□ -1.08
USP40-202ENST00000409945 NSMFQ6X4W1 530 aa8.31□□□□□ -1.08
USP40-202ENST00000409945 MARCH10Q8NA82 808 aaPredicted RBP8.31□□□□□ -1.08
USP40-202ENST00000409945 FCRL3Q96P31 734 aaPredicted RBP8.31□□□□□ -1.08
USP40-202ENST00000409945 CWC22Q9HCG8 908 aaKnown RBP8.31□□□□□ -1.08
USP40-202ENST00000409945 ZC3H7BQ9UGR2 993 aaKnown RBP8.31□□□□□ -1.08
USP40-202ENST00000409945 TMEFF2Q9UIK5 374 aaPredicted RBP8.31□□□□□ -1.08
USP40-202ENST00000409945 MAP2P11137 1827 aaKnown RBP8.31□□□□□ -1.08
USP40-202ENST00000409945 NOP56O00567 594 aaKnown RBP8.31□□□□□ -1.08
USP40-202ENST00000409945 CD3EP07766 207 aa8.31□□□□□ -1.08
USP40-202ENST00000409945 FGFR1P11362 822 aa8.31□□□□□ -1.08
USP40-202ENST00000409945 DHX37Q8IY37 1157 aaKnown RBP8.31□□□□□ -1.08
USP40-202ENST00000409945 GIMAP7Q8NHV1 300 aa8.31□□□□□ -1.08
USP40-202ENST00000409945 IFT57Q9NWB7 429 aa8.31□□□□□ -1.08
USP40-202ENST00000409945 POLKQ9UBT6 870 aa8.31□□□□□ -1.08
USP40-202ENST00000409945 PCDH11XQ9BZA7 1347 aa8.3□□□□□ -1.08
USP40-202ENST00000409945 PCDH11YQ9BZA8 1340 aa8.3□□□□□ -1.08
USP40-202ENST00000409945 GNAT3A8MTJ3 354 aa8.3□□□□□ -1.08
USP40-202ENST00000409945 FAM155AB1AL88 458 aaPredicted RBP8.3□□□□□ -1.08
USP40-202ENST00000409945 PLSCR1O15162 318 aa8.3□□□□□ -1.08
USP40-202ENST00000409945 DYRK3O43781 588 aa8.3□□□□□ -1.08
USP40-202ENST00000409945 TGFB1P01137 390 aa8.3□□□□□ -1.08
USP40-202ENST00000409945 CEACAM5P06731 702 aa8.3□□□□□ -1.08
USP40-202ENST00000409945 SCRN1Q12765 414 aa8.3□□□□□ -1.08
USP40-202ENST00000409945 CCDC103Q8IW40 242 aa8.3□□□□□ -1.08
USP40-202ENST00000409945 KREMEN2Q8NCW0 462 aa8.3□□□□□ -1.08
USP40-202ENST00000409945 SLC7A14Q8TBB6 771 aa8.3□□□□□ -1.08
USP40-202ENST00000409945 GPR62Q9BZJ7 368 aa8.3□□□□□ -1.08
USP40-202ENST00000409945 ATP13A1Q9HD20 1204 aa8.3□□□□□ -1.08
USP40-202ENST00000409945 SEMA3GQ9NS98 782 aa8.3□□□□□ -1.08
USP40-202ENST00000409945 ZSWIM5Q9P217 1185 aa8.3□□□□□ -1.08
USP40-202ENST00000409945 KCNH3Q9ULD8 1083 aa8.3□□□□□ -1.08
USP40-202ENST00000409945 TRAF6Q9Y4K3 522 aa8.3□□□□□ -1.08
USP40-202ENST00000409945 KAT6BQ8WYB5 2073 aa8.29□□□□□ -1.08
USP40-202ENST00000409945 A0A087WZG4 1122 aa8.29□□□□□ -1.08
USP40-202ENST00000409945 SDSP20132 328 aa8.29□□□□□ -1.08
USP40-202ENST00000409945 ITGB7P26010 798 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms