RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 DTHD1Q6ZMT9 781 aa20.43■□□□□ 0.86
SDC1-203ENST00000403076 MSL3Q8N5Y2 521 aaKnown RBP20.43■□□□□ 0.86
SDC1-203ENST00000403076 CDHR1Q96JP9 859 aa20.43■□□□□ 0.86
SDC1-203ENST00000403076 FAM20AQ96MK3 541 aa20.43■□□□□ 0.86
SDC1-203ENST00000403076 ZNF577Q9BSK1 485 aa20.43■□□□□ 0.86
SDC1-203ENST00000403076 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.43■□□□□ 0.86
SDC1-203ENST00000403076 SRRDQ9UH36 339 aa20.43■□□□□ 0.86
SDC1-203ENST00000403076 PCDHA7Q9UN72 937 aa20.43■□□□□ 0.86
SDC1-203ENST00000403076 PLXNA1Q9UIW2 1896 aa20.43■□□□□ 0.86
SDC1-203ENST00000403076 ELP1O95163 1332 aa20.43■□□□□ 0.86
SDC1-203ENST00000403076 VWA3AA6NCI4 1184 aa20.43■□□□□ 0.86
SDC1-203ENST00000403076 TBX3O15119 743 aa20.43■□□□□ 0.86
SDC1-203ENST00000403076 MAFGO15525 162 aa20.43■□□□□ 0.86
SDC1-203ENST00000403076 GNRH1P01148 92 aa20.43■□□□□ 0.86
SDC1-203ENST00000403076 MCM4P33991 863 aa20.43■□□□□ 0.86
SDC1-203ENST00000403076 CCL14Q16627 93 aa20.43■□□□□ 0.86
SDC1-203ENST00000403076 TMEM266Q2M3C6 531 aa20.43■□□□□ 0.86
SDC1-203ENST00000403076 SLFN12Q8IYM2 578 aa20.43■□□□□ 0.86
SDC1-203ENST00000403076 FERMT2Q96AC1 680 aa20.43■□□□□ 0.86
SDC1-203ENST00000403076 MTMR9Q96QG7 549 aa20.43■□□□□ 0.86
SDC1-203ENST00000403076 KCNMB3Q9NPA1 279 aa20.43■□□□□ 0.86
SDC1-203ENST00000403076 SRPRBQ9Y5M8 271 aaKnown RBP20.43■□□□□ 0.86
SDC1-203ENST00000403076 ZSWIM8A7E2V4 1837 aa20.42■□□□□ 0.86
SDC1-203ENST00000403076 SYNGAP1Q96PV0 1343 aa20.42■□□□□ 0.86
SDC1-203ENST00000403076 XRCC5P13010 732 aaKnown RBP20.42■□□□□ 0.86
SDC1-203ENST00000403076 CAP1Q01518 475 aa20.42■□□□□ 0.86
SDC1-203ENST00000403076 FBXO16Q8IX29 292 aaPredicted RBP20.42■□□□□ 0.86
SDC1-203ENST00000403076 TMEM87AQ8NBN3 555 aa20.42■□□□□ 0.86
SDC1-203ENST00000403076 ETNPPLQ8TBG4 499 aa20.42■□□□□ 0.86
SDC1-203ENST00000403076 HAS1Q92839 578 aa20.42■□□□□ 0.86
SDC1-203ENST00000403076 GJA10Q969M2 543 aa20.42■□□□□ 0.86
SDC1-203ENST00000403076 FBXO2Q9UK22 296 aaPredicted RBP20.42■□□□□ 0.86
SDC1-203ENST00000403076 PCDHA12Q9UN75 941 aa20.42■□□□□ 0.86
SDC1-203ENST00000403076 MORC2Q9Y6X9 1032 aaPredicted RBP20.42■□□□□ 0.86
SDC1-203ENST00000403076 IPO5O00410 1097 aaKnown RBP20.41■□□□□ 0.86
SDC1-203ENST00000403076 CUTAO60888 179 aa20.41■□□□□ 0.86
SDC1-203ENST00000403076 RGS20O76081 388 aa20.41■□□□□ 0.86
SDC1-203ENST00000403076 OLFML2BQ68BL8 750 aa20.41■□□□□ 0.86
SDC1-203ENST00000403076 CLIC6Q96NY7 704 aa20.41■□□□□ 0.86
SDC1-203ENST00000403076 TTC12Q9H892 705 aaPredicted RBP20.41■□□□□ 0.86
SDC1-203ENST00000403076 AGO4Q9HCK5 861 aaKnown RBP20.41■□□□□ 0.86
SDC1-203ENST00000403076 VTA1Q9NP79 307 aa20.41■□□□□ 0.86
SDC1-203ENST00000403076 SPATA31C2B4DYI2 1134 aa20.4■□□□□ 0.86
SDC1-203ENST00000403076 GAS7O60861 476 aa20.4■□□□□ 0.86
SDC1-203ENST00000403076 SNAI1O95863 264 aaPredicted RBP20.4■□□□□ 0.86
SDC1-203ENST00000403076 TECP42680 631 aa20.4■□□□□ 0.86
SDC1-203ENST00000403076 LRCH2Q5VUJ6 765 aa20.4■□□□□ 0.86
SDC1-203ENST00000403076 RAET1EQ8TD07 263 aa20.4■□□□□ 0.86
SDC1-203ENST00000403076 SLC5A5Q92911 643 aa20.4■□□□□ 0.86
SDC1-203ENST00000403076 RAB34Q9BZG1 259 aa20.4■□□□□ 0.86
SDC1-203ENST00000403076 ABHD16BQ9H3Z7 469 aa20.4■□□□□ 0.86
SDC1-203ENST00000403076 FLRT1Q9NZU1 646 aa20.4■□□□□ 0.86
SDC1-203ENST00000403076 ZHX1Q9UKY1 873 aaPredicted RBP20.4■□□□□ 0.86
SDC1-203ENST00000403076 DDX11L8A8MPP1 907 aa20.39■□□□□ 0.85
SDC1-203ENST00000403076 ICAM3P32942 547 aa20.39■□□□□ 0.85
SDC1-203ENST00000403076 CYP2C19P33261 490 aa20.39■□□□□ 0.85
SDC1-203ENST00000403076 MFSD14CQ5VZR4 134 aa20.39■□□□□ 0.85
SDC1-203ENST00000403076 ADALQ6DHV7 355 aa20.39■□□□□ 0.85
SDC1-203ENST00000403076 KCNV1Q6PIU1 500 aa20.39■□□□□ 0.85
SDC1-203ENST00000403076 TRMT44Q8IYL2 757 aaKnown RBP20.39■□□□□ 0.85
SDC1-203ENST00000403076 TEKT3Q9BXF9 490 aa20.39■□□□□ 0.85
SDC1-203ENST00000403076 TCEAL9Q9UHQ7 104 aa20.39■□□□□ 0.85
SDC1-203ENST00000403076 TRIM17Q9Y577 477 aa20.39■□□□□ 0.85
SDC1-203ENST00000403076 DDX39AO00148 427 aaKnown RBP20.38■□□□□ 0.85
SDC1-203ENST00000403076 GADD45BO75293 160 aaPredicted RBP20.38■□□□□ 0.85
SDC1-203ENST00000403076 GRIN1Q05586 938 aa20.38■□□□□ 0.85
SDC1-203ENST00000403076 ACVR2BQ13705 512 aa20.38■□□□□ 0.85
SDC1-203ENST00000403076 IL17AQ16552 155 aa20.38■□□□□ 0.85
SDC1-203ENST00000403076 AXDND1Q5T1B0 1012 aaPredicted RBP20.38■□□□□ 0.85
SDC1-203ENST00000403076 SCFD2Q8WU76 684 aa20.38■□□□□ 0.85
SDC1-203ENST00000403076 RIT2Q99578 217 aa20.38■□□□□ 0.85
SDC1-203ENST00000403076 SDF4Q9BRK5 362 aa20.38■□□□□ 0.85
SDC1-203ENST00000403076 CSRNP2Q9H175 543 aa20.38■□□□□ 0.85
SDC1-203ENST00000403076 TBC1D22BQ9NU19 505 aa20.38■□□□□ 0.85
SDC1-203ENST00000403076 LMBRD1Q9NUN5 540 aa20.38■□□□□ 0.85
SDC1-203ENST00000403076 MCM3APO60318 1980 aa20.38■□□□□ 0.85
SDC1-203ENST00000403076 ATP9AO75110 1047 aa20.37■□□□□ 0.85
SDC1-203ENST00000403076 TGFB3P10600 412 aa20.37■□□□□ 0.85
SDC1-203ENST00000403076 LONP1P36776 959 aaKnown RBP20.37■□□□□ 0.85
SDC1-203ENST00000403076 SEMA3FQ13275 785 aa20.37■□□□□ 0.85
SDC1-203ENST00000403076 IRF5Q13568 498 aa20.37■□□□□ 0.85
SDC1-203ENST00000403076 TTLL4Q14679 1199 aa20.37■□□□□ 0.85
SDC1-203ENST00000403076 SPECC1Q5M775 1068 aa20.37■□□□□ 0.85
SDC1-203ENST00000403076 PDGFCQ9NRA1 345 aa20.37■□□□□ 0.85
SDC1-203ENST00000403076 LRWD1Q9UFC0 647 aa20.37■□□□□ 0.85
SDC1-203ENST00000403076 ADCY3O60266 1144 aa20.37■□□□□ 0.85
SDC1-203ENST00000403076 PSMD10O75832 226 aa20.37■□□□□ 0.85
SDC1-203ENST00000403076 TXNP10599 105 aaKnown RBP20.37■□□□□ 0.85
SDC1-203ENST00000403076 FXR2P51116 673 aaKnown RBP eCLIP20.37■□□□□ 0.85
SDC1-203ENST00000403076 PRMT2P55345 433 aa20.37■□□□□ 0.85
SDC1-203ENST00000403076 UBE2HP62256 183 aa20.37■□□□□ 0.85
SDC1-203ENST00000403076 ITGB3BPQ13352 177 aaPredicted RBP20.37■□□□□ 0.85
SDC1-203ENST00000403076 PRAMEF19Q5SWL8 479 aa20.37■□□□□ 0.85
SDC1-203ENST00000403076 ZNF579Q8NAF0 562 aaKnown RBP20.37■□□□□ 0.85
SDC1-203ENST00000403076 CHMP2AO43633 222 aa20.36■□□□□ 0.85
SDC1-203ENST00000403076 SORBS3O60504 671 aa20.36■□□□□ 0.85
SDC1-203ENST00000403076 PTMSP20962 102 aa20.36■□□□□ 0.85
SDC1-203ENST00000403076 NEDD9Q14511 834 aa20.36■□□□□ 0.85
SDC1-203ENST00000403076 PDIA5Q14554 519 aa20.36■□□□□ 0.85
SDC1-203ENST00000403076 NFKBIBQ15653 356 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms