RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 MYH15Q9Y2K3 1946 aa16.06■□□□□ 0.16
SKA1-202ENST00000398452 RPTORQ8N122 1335 aa16.06■□□□□ 0.16
SKA1-202ENST00000398452 CYP3A7-CYP3A51PA0A087WV96 503 aa16.06■□□□□ 0.16
SKA1-202ENST00000398452 VWA3AA6NCI4 1184 aa16.06■□□□□ 0.16
SKA1-202ENST00000398452 TBX3O15119 743 aa16.06■□□□□ 0.16
SKA1-202ENST00000398452 NR3C2P08235 984 aa16.06■□□□□ 0.16
SKA1-202ENST00000398452 BCRP11274 1271 aa16.06■□□□□ 0.16
SKA1-202ENST00000398452 PTPREP23469 700 aa16.06■□□□□ 0.16
SKA1-202ENST00000398452 CYP3A7P24462 503 aa16.06■□□□□ 0.16
SKA1-202ENST00000398452 STXBP2Q15833 593 aa16.06■□□□□ 0.16
SKA1-202ENST00000398452 Q4G0T1 1027 aa16.06■□□□□ 0.16
SKA1-202ENST00000398452 GPR142Q7Z601 462 aa16.06■□□□□ 0.16
SKA1-202ENST00000398452 RASSF8Q8NHQ8 419 aa16.06■□□□□ 0.16
SKA1-202ENST00000398452 SYAP1Q96A49 352 aaPredicted RBP16.06■□□□□ 0.16
SKA1-202ENST00000398452 CDHR1Q96JP9 859 aa16.06■□□□□ 0.16
SKA1-202ENST00000398452 PDCD2LQ9BRP1 358 aa16.06■□□□□ 0.16
SKA1-202ENST00000398452 CFHR5Q9BXR6 569 aa16.06■□□□□ 0.16
SKA1-202ENST00000398452 LOC102724159A0A0B4J2E5 919 aa16.05■□□□□ 0.16
SKA1-202ENST00000398452 A0A1W2PQ27 194 aa16.05■□□□□ 0.16
SKA1-202ENST00000398452 A0A1W2PQ64 194 aa16.05■□□□□ 0.16
SKA1-202ENST00000398452 A0A1W2PQD8 194 aa16.05■□□□□ 0.16
SKA1-202ENST00000398452 ASB14A6NK59 587 aa16.05■□□□□ 0.16
SKA1-202ENST00000398452 LONP1P36776 959 aaKnown RBP16.05■□□□□ 0.16
SKA1-202ENST00000398452 TXKP42681 527 aa16.05■□□□□ 0.16
SKA1-202ENST00000398452 ALDH5A1P51649 535 aaPredicted RBP16.05■□□□□ 0.16
SKA1-202ENST00000398452 PWP2Q15269 919 aaKnown RBP16.05■□□□□ 0.16
SKA1-202ENST00000398452 C17orf99Q6UX52 265 aa16.05■□□□□ 0.16
SKA1-202ENST00000398452 MRPS27Q92552 414 aaKnown RBP16.05■□□□□ 0.16
SKA1-202ENST00000398452 CCDC34Q96HJ3 373 aa16.05■□□□□ 0.16
SKA1-202ENST00000398452 FAM20AQ96MK3 541 aa16.05■□□□□ 0.16
SKA1-202ENST00000398452 MXRA8Q9BRK3 442 aa16.05■□□□□ 0.16
SKA1-202ENST00000398452 RBBP6Q7Z6E9 1792 aaKnown RBP16.05■□□□□ 0.16
SKA1-202ENST00000398452 FRMPD4Q14CM0 1322 aa16.04■□□□□ 0.16
SKA1-202ENST00000398452 ADGRA2Q96PE1 1338 aa16.04■□□□□ 0.16
SKA1-202ENST00000398452 SLC15A5A6NIM6 579 aa16.04■□□□□ 0.16
SKA1-202ENST00000398452 TNPO2O14787 897 aaKnown RBP16.04■□□□□ 0.16
SKA1-202ENST00000398452 MAFGO15525 162 aa16.04■□□□□ 0.16
SKA1-202ENST00000398452 PGK2P07205 417 aa16.04■□□□□ 0.16
SKA1-202ENST00000398452 ADORA2AP29274 412 aa16.04■□□□□ 0.16
SKA1-202ENST00000398452 FCGRTP55899 365 aa16.04■□□□□ 0.16
SKA1-202ENST00000398452 OTOP1Q7RTM1 612 aa16.04■□□□□ 0.16
SKA1-202ENST00000398452 NIPA1Q7RTP0 329 aa16.04■□□□□ 0.16
SKA1-202ENST00000398452 FAM133AQ8N9E0 248 aa16.04■□□□□ 0.16
SKA1-202ENST00000398452 FSIP1Q8NA03 581 aa16.04■□□□□ 0.16
SKA1-202ENST00000398452 CRYGNQ8WXF5 182 aa16.04■□□□□ 0.16
SKA1-202ENST00000398452 ERO1AQ96HE7 468 aa16.04■□□□□ 0.16
SKA1-202ENST00000398452 PYM1Q9BRP8 204 aaKnown RBP16.04■□□□□ 0.16
SKA1-202ENST00000398452 FBXO2Q9UK22 296 aaPredicted RBP16.04■□□□□ 0.16
SKA1-202ENST00000398452 PCDHA12Q9UN75 941 aa16.04■□□□□ 0.16
SKA1-202ENST00000398452 STK24Q9Y6E0 443 aa16.04■□□□□ 0.16
SKA1-202ENST00000398452 SMCHD1A6NHR9 2005 aa16.03■□□□□ 0.16
SKA1-202ENST00000398452 WNT7AO00755 349 aa16.03■□□□□ 0.16
SKA1-202ENST00000398452 SLC37A4O43826 429 aa16.03■□□□□ 0.16
SKA1-202ENST00000398452 TRAK2O60296 914 aa16.03■□□□□ 0.16
SKA1-202ENST00000398452 GADD45BO75293 160 aaPredicted RBP16.03■□□□□ 0.16
SKA1-202ENST00000398452 CMA1P23946 247 aa16.03■□□□□ 0.16
SKA1-202ENST00000398452 UBA7P41226 1012 aa16.03■□□□□ 0.16
SKA1-202ENST00000398452 CNTN2Q02246 1040 aa16.03■□□□□ 0.16
SKA1-202ENST00000398452 SP3Q02447 781 aa16.03■□□□□ 0.16
SKA1-202ENST00000398452 MTMR1Q13613 665 aa16.03■□□□□ 0.16
SKA1-202ENST00000398452 SOCS4Q8WXH5 440 aa16.03■□□□□ 0.16
SKA1-202ENST00000398452 AK8Q96MA6 479 aa16.03■□□□□ 0.16
SKA1-202ENST00000398452 MBOAT7Q96N66 472 aa16.03■□□□□ 0.16
SKA1-202ENST00000398452 NUDT12Q9BQG2 462 aa16.03■□□□□ 0.16
SKA1-202ENST00000398452 ZNF577Q9BSK1 485 aa16.03■□□□□ 0.16
SKA1-202ENST00000398452 ANP32EQ9BTT0 268 aa16.03■□□□□ 0.16
SKA1-202ENST00000398452 TMEM60Q9H2L4 133 aa16.03■□□□□ 0.16
SKA1-202ENST00000398452 JADE2Q9NQC1 790 aa16.03■□□□□ 0.16
SKA1-202ENST00000398452 TCHHQ07283 1943 aa16.03■□□□□ 0.16
SKA1-202ENST00000398452 FAM86B1E9PN63 330 aa16.02■□□□□ 0.16
SKA1-202ENST00000398452 KINO60870 393 aaKnown RBP16.02■□□□□ 0.16
SKA1-202ENST00000398452 EIF3JO75822 258 aaKnown RBP16.02■□□□□ 0.16
SKA1-202ENST00000398452 FAM86B2P0C5J1 330 aa16.02■□□□□ 0.16
SKA1-202ENST00000398452 TECP42680 631 aa16.02■□□□□ 0.16
SKA1-202ENST00000398452 ARHGEF6Q15052 776 aa16.02■□□□□ 0.16
SKA1-202ENST00000398452 VSIG10LQ86VR7 867 aa16.02■□□□□ 0.16
SKA1-202ENST00000398452 ERMNQ8TAM6 284 aa16.02■□□□□ 0.16
SKA1-202ENST00000398452 GPRASP2Q96D09 838 aa16.02■□□□□ 0.16
SKA1-202ENST00000398452 CDK5RAP3Q96JB5 506 aa16.02■□□□□ 0.16
SKA1-202ENST00000398452 CLIC6Q96NY7 704 aa16.02■□□□□ 0.16
SKA1-202ENST00000398452 PURBQ96QR8 312 aaKnown RBP16.02■□□□□ 0.16
SKA1-202ENST00000398452 TEKT3Q9BXF9 490 aa16.02■□□□□ 0.16
SKA1-202ENST00000398452 CSRNP2Q9H175 543 aa16.02■□□□□ 0.16
SKA1-202ENST00000398452 TTC12Q9H892 705 aaPredicted RBP16.02■□□□□ 0.16
SKA1-202ENST00000398452 CCDC39Q9UFE4 941 aa16.02■□□□□ 0.16
SKA1-202ENST00000398452 UBIAD1Q9Y5Z9 338 aa16.02■□□□□ 0.16
SKA1-202ENST00000398452 MEIS1O00470 390 aa16.01■□□□□ 0.15
SKA1-202ENST00000398452 GAS7O60861 476 aa16.01■□□□□ 0.15
SKA1-202ENST00000398452 RGS2P41220 211 aa16.01■□□□□ 0.15
SKA1-202ENST00000398452 CAP1Q01518 475 aa16.01■□□□□ 0.15
SKA1-202ENST00000398452 GRB14Q14449 540 aa16.01■□□□□ 0.15
SKA1-202ENST00000398452 KLHL40Q2TBA0 621 aa16.01■□□□□ 0.15
SKA1-202ENST00000398452 LRCH2Q5VUJ6 765 aa16.01■□□□□ 0.15
SKA1-202ENST00000398452 KRT79Q5XKE5 535 aa16.01■□□□□ 0.15
SKA1-202ENST00000398452 C4orf32Q8N8J7 132 aa16.01■□□□□ 0.15
SKA1-202ENST00000398452 CALML4Q96GE6 196 aa16.01■□□□□ 0.15
SKA1-202ENST00000398452 MTMR9Q96QG7 549 aa16.01■□□□□ 0.15
SKA1-202ENST00000398452 SDF4Q9BRK5 362 aa16.01■□□□□ 0.15
SKA1-202ENST00000398452 WDR11Q9BZH6 1224 aa16.01■□□□□ 0.15
SKA1-202ENST00000398452 KCNMB3Q9NPA1 279 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms