RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 CPXCR1Q8N123 301 aa7.26□□□□□ -1.25
TM9SF4-202ENST00000398022 GALNT6Q8NCL4 622 aa7.26□□□□□ -1.25
TM9SF4-202ENST00000398022 CCDC150Q8NCX0 1101 aa7.26□□□□□ -1.25
TM9SF4-202ENST00000398022 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.26□□□□□ -1.254e-7■■■□□ 16.9
TM9SF4-202ENST00000398022 UQCC2Q9BRT2 126 aa7.26□□□□□ -1.25
TM9SF4-202ENST00000398022 DAAM1Q9Y4D1 1078 aa7.26□□□□□ -1.25
TM9SF4-202ENST00000398022 NR1I2O75469 434 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 SEC13P55735 322 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 GSDMDP57764 484 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 MDM2Q00987 491 aaPredicted RBP7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 TOB2Q14106 344 aaPredicted RBP7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 LRRC23Q53EV4 343 aaPredicted RBP7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 TMC6Q7Z403 805 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 ZKSCAN7Q9P0L1 754 aaPredicted RBP7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 CTNNA3Q9UI47 895 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 FAM184BQ9ULE4 1060 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 GTF2A1LQ9UNN4 478 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 PCDHGB3Q9Y5G1 929 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 MED23Q9ULK4 1368 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 COL11A2P13942 1736 aaPredicted RBP7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 PDLIM1O00151 329 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 CASQ2O14958 399 aaPredicted RBP7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 NMT2O60551 498 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 TAF5LO75529 589 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 ATP5JP18859 108 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 GABREP78334 506 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 LMNB2Q03252 620 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 SP140Q13342 867 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 COG2Q14746 738 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 LRRC41Q15345 812 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 SARM1Q6SZW1 724 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 Q6ZUG5 572 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 ARHGAP22Q7Z5H3 698 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 DDX11Q96FC9 970 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 MTUS1Q9ULD2 1270 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 RFX7Q2KHR2 1363 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 UTYO14607 1347 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 P4HA2O15460 535 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 HSPA8P11142 646 aaKnown RBP7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 KRT13P13646 458 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 MASP1P48740 699 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 LAPTM5Q13571 262 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 IMMTQ16891 758 aaKnown RBP7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 MCMDC2Q4G0Z9 681 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 RILPL1Q5EBL4 403 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 ANO1Q5XXA6 986 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 THOC7Q6I9Y2 204 aaKnown RBP7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 ARMC5Q96C12 935 aa7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 RBM14Q96PK6 669 aaKnown RBP7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 NGRNQ9NPE2 291 aaKnown RBP7.25□□□□□ -1.25
TM9SF4-202ENST00000398022 ADAMTSL1Q8N6G6 1762 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 TTI1O43156 1089 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 DTNBO60941 627 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 SKAP2O75563 359 aaPredicted RBP7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 ATP5DP30049 168 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 SKOR1P84550 965 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 CEBPZQ03701 1054 aaKnown RBP7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 PPIDQ08752 370 aaKnown RBP7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 LRMPQ12912 555 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 RESTQ13127 1097 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 GRM1Q13255 1194 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 SLC15A2Q16348 729 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 LRRFIP1Q32MZ4 808 aaKnown RBP7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 SDF4Q9BRK5 362 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 SYT17Q9BSW7 474 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 NSRP1Q9H0G5 558 aaKnown RBP7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 BRCA2P51587 3418 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 SCAMP3O14828 347 aaKnown RBP7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 SLC4A1P02730 911 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 ME1P48163 572 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 POLD2P49005 469 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 MOGSQ13724 837 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 MAATS1Q7Z4T9 603 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 ANKRD42Q8N9B4 389 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 RTCAO00442 366 aaKnown RBP7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 JAK2O60674 1132 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 RTN2O75298 545 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 SFTPCP11686 197 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 TNFAIP3P21580 790 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 USPL1Q5W0Q7 1092 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 HIBCHQ6NVY1 386 aaPredicted RBP7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 DHX32Q7L7V1 743 aaKnown RBP7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 USP38Q8NB14 1042 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 CTCFLQ8NI51 663 aaPredicted RBP7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 MGARPQ8TDB4 240 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 DTNBP1Q96EV8 351 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 STRN4Q9NRL3 753 aa7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 DNAAF2Q9NVR5 837 aaKnown RBP7.24□□□□□ -1.25
TM9SF4-202ENST00000398022 LSM1O15116 133 aaKnown RBP7.23□□□□□ -1.25
TM9SF4-202ENST00000398022 TSPAN6O43657 245 aa7.23□□□□□ -1.25
TM9SF4-202ENST00000398022 MGEA5O60502 916 aa7.23□□□□□ -1.25
TM9SF4-202ENST00000398022 RHOBTB3O94955 611 aa7.23□□□□□ -1.25
TM9SF4-202ENST00000398022 TXNRD1Q16881 649 aa7.23□□□□□ -1.25
TM9SF4-202ENST00000398022 TMCO3Q6UWJ1 677 aa7.23□□□□□ -1.25
TM9SF4-202ENST00000398022 DGLUCYQ7Z3D6 616 aa7.23□□□□□ -1.25
TM9SF4-202ENST00000398022 ZNF589Q86UQ0 364 aaPredicted RBP7.23□□□□□ -1.25
TM9SF4-202ENST00000398022 NFATC2IPQ8NCF5 419 aa7.23□□□□□ -1.25
TM9SF4-202ENST00000398022 TRIM58Q8NG06 486 aa7.23□□□□□ -1.25
TM9SF4-202ENST00000398022 SPATA18Q8TC71 538 aa7.23□□□□□ -1.25
TM9SF4-202ENST00000398022 SAAL1Q96ER3 474 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms