RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 HERC6Q8IVU3 1022 aa11.98□□□□□ -0.49
NEDD8-202ENST00000396828 RETREG2Q8NC44 543 aa11.98□□□□□ -0.49
NEDD8-202ENST00000396828 ATXN2LQ8WWM7 1075 aaKnown RBP11.98□□□□□ -0.49
NEDD8-202ENST00000396828 NECAB3Q96P71 396 aaPredicted RBP11.98□□□□□ -0.49
NEDD8-202ENST00000396828 IWS1Q96ST2 819 aa11.98□□□□□ -0.49
NEDD8-202ENST00000396828 UBAC1Q9BSL1 405 aa11.98□□□□□ -0.49
NEDD8-202ENST00000396828 ALG1Q9BT22 464 aa11.98□□□□□ -0.49
NEDD8-202ENST00000396828 GTF2IRD1Q9UHL9 959 aa11.98□□□□□ -0.49
NEDD8-202ENST00000396828 CTNNA3Q9UI47 895 aa11.98□□□□□ -0.49
NEDD8-202ENST00000396828 NOD1Q9Y239 953 aa11.98□□□□□ -0.49
NEDD8-202ENST00000396828 RBM19Q9Y4C8 960 aaKnown RBP11.98□□□□□ -0.49
NEDD8-202ENST00000396828 MTCH2Q9Y6C9 303 aa11.98□□□□□ -0.49
NEDD8-202ENST00000396828 HAS3O00219 553 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 TNFRSF10AO00220 468 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 ZBTB5O15062 677 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 NBNO60934 754 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 CYP21A2P08686 494 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 MYCLP12524 364 aaPredicted RBP11.97□□□□□ -0.49
NEDD8-202ENST00000396828 ACTN1P12814 892 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 CASTP20810 708 aaKnown RBP11.97□□□□□ -0.49
NEDD8-202ENST00000396828 HSPA4P34932 840 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 ANP32AP39687 249 aaKnown RBP11.97□□□□□ -0.49
NEDD8-202ENST00000396828 PSEN2P49810 448 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 ANAPC15P60006 121 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 DEFB103AP81534 67 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 GHRHRQ02643 423 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 BFSP2Q13515 415 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 COL9A3Q14050 684 aaPredicted RBP11.97□□□□□ -0.49
NEDD8-202ENST00000396828 MBTPS1Q14703 1052 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 TRIM71Q2Q1W2 868 aaKnown RBP11.97□□□□□ -0.49
NEDD8-202ENST00000396828 HSDL1Q3SXM5 330 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 MYSM1Q5VVJ2 828 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 STOX1Q6ZVD7 989 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 HOMER1Q86YM7 354 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 ADAMTS19Q8TE59 1207 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 ARNTL2Q8WYA1 636 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 EMID1Q96A84 441 aaPredicted RBP11.97□□□□□ -0.49
NEDD8-202ENST00000396828 PIGSQ96S52 555 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 PDCD2LQ9BRP1 358 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 AMNQ9BXJ7 453 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 MAF1Q9H063 256 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 CNNM2Q9H8M5 875 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 TELO2Q9Y4R8 837 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 PCDHA1Q9Y5I3 950 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 RBM8AQ9Y5S9 174 aaKnown RBP11.97□□□□□ -0.49
NEDD8-202ENST00000396828 MRVI1Q9Y6F6 885 aa11.97□□□□□ -0.49
NEDD8-202ENST00000396828 LPXNO60711 386 aa11.96□□□□□ -0.49
NEDD8-202ENST00000396828 CKBP12277 381 aa11.96□□□□□ -0.49
NEDD8-202ENST00000396828 NT5C2P49902 561 aa11.96□□□□□ -0.49
NEDD8-202ENST00000396828 KCNQ1P51787 676 aa11.96□□□□□ -0.49
NEDD8-202ENST00000396828 WDR5P61964 334 aaKnown RBP11.96□□□□□ -0.49
NEDD8-202ENST00000396828 MRPS5P82675 430 aaKnown RBP11.96□□□□□ -0.49
NEDD8-202ENST00000396828 MFSD10Q14728 455 aa11.96□□□□□ -0.49
NEDD8-202ENST00000396828 PGM5Q15124 567 aa11.96□□□□□ -0.49
NEDD8-202ENST00000396828 DGKDQ16760 1214 aa11.96□□□□□ -0.49
NEDD8-202ENST00000396828 KIAA0753Q2KHM9 967 aa11.96□□□□□ -0.49
NEDD8-202ENST00000396828 VSIG10LQ86VR7 867 aa11.96□□□□□ -0.49
NEDD8-202ENST00000396828 PHOSPHO2Q8TCD6 241 aa11.96□□□□□ -0.49
NEDD8-202ENST00000396828 AFAP1L1Q8TED9 768 aa11.96□□□□□ -0.49
NEDD8-202ENST00000396828 SLC9A7Q96T83 725 aa11.96□□□□□ -0.49
NEDD8-202ENST00000396828 OSBPL7Q9BZF2 842 aa11.96□□□□□ -0.49
NEDD8-202ENST00000396828 RAPGEFL1Q9UHV5 662 aa11.96□□□□□ -0.49
NEDD8-202ENST00000396828 DOCK5Q9H7D0 1870 aa11.95□□□□□ -0.5
NEDD8-202ENST00000396828 COL4A4P53420 1690 aaPredicted RBP11.95□□□□□ -0.5
NEDD8-202ENST00000396828 F2P00734 622 aa11.95□□□□□ -0.5
NEDD8-202ENST00000396828 HOXD8P13378 290 aaPredicted RBP11.95□□□□□ -0.5
NEDD8-202ENST00000396828 BMP1P13497 986 aa11.95□□□□□ -0.5
NEDD8-202ENST00000396828 SELPP16109 830 aa11.95□□□□□ -0.5
NEDD8-202ENST00000396828 POU3F3P20264 500 aaPredicted RBP11.95□□□□□ -0.5
NEDD8-202ENST00000396828 ANTXR2P58335 489 aa11.95□□□□□ -0.5
NEDD8-202ENST00000396828 TROAPQ12815 778 aa11.95□□□□□ -0.5
NEDD8-202ENST00000396828 LAMC2Q13753 1193 aa11.95□□□□□ -0.5
NEDD8-202ENST00000396828 GRM4Q14833 912 aa11.95□□□□□ -0.5
NEDD8-202ENST00000396828 NECTIN1Q15223 517 aa11.95□□□□□ -0.5
NEDD8-202ENST00000396828 CELF3Q5SZQ8 465 aaKnown RBP11.95□□□□□ -0.5
NEDD8-202ENST00000396828 ZNF618Q5T7W0 954 aa11.95□□□□□ -0.5
NEDD8-202ENST00000396828 LRRC8DQ7L1W4 858 aa11.95□□□□□ -0.5
NEDD8-202ENST00000396828 FCHSD1Q86WN1 690 aa11.95□□□□□ -0.5
NEDD8-202ENST00000396828 DHX37Q8IY37 1157 aaKnown RBP11.95□□□□□ -0.5
NEDD8-202ENST00000396828 C7orf31Q8N865 590 aa11.95□□□□□ -0.5
NEDD8-202ENST00000396828 PPTC7Q8NI37 304 aa11.95□□□□□ -0.5
NEDD8-202ENST00000396828 CAGE1Q8TC20 777 aa11.95□□□□□ -0.5
NEDD8-202ENST00000396828 PIBF1Q8WXW3 757 aa11.95□□□□□ -0.5
NEDD8-202ENST00000396828 C16orf70Q9BSU1 422 aa11.95□□□□□ -0.5
NEDD8-202ENST00000396828 RIOX1Q9H6W3 641 aa11.95□□□□□ -0.5
NEDD8-202ENST00000396828 C5orf42Q9H799 3197 aa11.95□□□□□ -0.5
NEDD8-202ENST00000396828 E7EWF7 191 aa11.94□□□□□ -0.5
NEDD8-202ENST00000396828 IFIT3O14879 490 aaKnown RBP11.94□□□□□ -0.5
NEDD8-202ENST00000396828 TLL1O43897 1013 aa11.94□□□□□ -0.5
NEDD8-202ENST00000396828 GGPS1O95749 300 aa11.94□□□□□ -0.5
NEDD8-202ENST00000396828 CXCL10P02778 98 aa11.94□□□□□ -0.5
NEDD8-202ENST00000396828 UBA1P22314 1058 aaKnown RBP11.94□□□□□ -0.5
NEDD8-202ENST00000396828 MRPS9P82933 396 aaKnown RBP11.94□□□□□ -0.5
NEDD8-202ENST00000396828 RBL2Q08999 1139 aa11.94□□□□□ -0.5
NEDD8-202ENST00000396828 GRB10Q13322 594 aa11.94□□□□□ -0.5
NEDD8-202ENST00000396828 KRT32Q14532 448 aa11.94□□□□□ -0.5
NEDD8-202ENST00000396828 CREB3L3Q68CJ9 461 aa11.94□□□□□ -0.5
NEDD8-202ENST00000396828 IL27Q8NEV9 243 aa11.94□□□□□ -0.5
NEDD8-202ENST00000396828 SPATA33Q96N06 139 aa11.94□□□□□ -0.5
NEDD8-202ENST00000396828 UHRF1Q96T88 793 aaPredicted RBP11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms