RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 KRT79Q5XKE5 535 aa22.82■■□□□ 1.24
CLK3-202ENST00000395066 FAM196AQ6ZSG2 479 aa22.82■■□□□ 1.24
CLK3-202ENST00000395066 POLLQ9UGP5 575 aa22.82■■□□□ 1.24
CLK3-202ENST00000395066 SPATA4Q8NEY3 305 aa22.82■■□□□ 1.24
CLK3-202ENST00000395066 PVALEFA0A1B0GWK0 134 aa22.81■■□□□ 1.24
CLK3-202ENST00000395066 NAP1L1P55209 391 aaKnown RBP22.81■■□□□ 1.24
CLK3-202ENST00000395066 ARID5AQ03989 594 aa22.81■■□□□ 1.24
CLK3-202ENST00000395066 COBLL1Q53SF7 1204 aa22.81■■□□□ 1.24
CLK3-202ENST00000395066 DNAJC21Q5F1R6 531 aaKnown RBP22.81■■□□□ 1.24
CLK3-202ENST00000395066 TRAPPC3LQ5T215 181 aa22.81■■□□□ 1.24
CLK3-202ENST00000395066 SND1Q7KZF4 910 aaKnown RBP eCLIP22.81■■□□□ 1.24
CLK3-202ENST00000395066 HAS1Q92839 578 aa22.81■■□□□ 1.24
CLK3-202ENST00000395066 MXD3Q9BW11 206 aa22.81■■□□□ 1.24
CLK3-202ENST00000395066 GGA1Q9UJY5 639 aa22.81■■□□□ 1.24
CLK3-202ENST00000395066 RAD21O60216 631 aa22.81■■□□□ 1.24
CLK3-202ENST00000395066 PPP1R2P41236 205 aa22.81■■□□□ 1.24
CLK3-202ENST00000395066 COASYQ13057 564 aa22.81■■□□□ 1.24
CLK3-202ENST00000395066 ADGRF4Q8IZF3 695 aa22.81■■□□□ 1.24
CLK3-202ENST00000395066 PLCD3Q8N3E9 789 aa22.81■■□□□ 1.24
CLK3-202ENST00000395066 NGLY1Q96IV0 654 aa22.81■■□□□ 1.24
CLK3-202ENST00000395066 JMJD4Q9H9V9 463 aa22.81■■□□□ 1.24
CLK3-202ENST00000395066 DDX4Q9NQI0 724 aaKnown RBP22.81■■□□□ 1.24
CLK3-202ENST00000395066 DAGLAQ9Y4D2 1042 aa22.81■■□□□ 1.24
CLK3-202ENST00000395066 BTAF1O14981 1849 aa22.81■■□□□ 1.24
CLK3-202ENST00000395066 ESYT2A0FGR8 921 aa22.8■■□□□ 1.24
CLK3-202ENST00000395066 TRAF5O00463 557 aa22.8■■□□□ 1.24
CLK3-202ENST00000395066 IQCEQ6IPM2 695 aa22.8■■□□□ 1.24
CLK3-202ENST00000395066 KCTD1Q719H9 257 aa22.8■■□□□ 1.24
CLK3-202ENST00000395066 FNBP4Q8N3X1 1017 aaPredicted RBP22.8■■□□□ 1.24
CLK3-202ENST00000395066 FAM76AQ8TAV0 307 aa22.8■■□□□ 1.24
CLK3-202ENST00000395066 E9PMD0 336 aa22.8■■□□□ 1.24
CLK3-202ENST00000395066 RIMBP2O15034 1052 aa22.8■■□□□ 1.24
CLK3-202ENST00000395066 MARCH6O60337 910 aa22.8■■□□□ 1.24
CLK3-202ENST00000395066 SHOX2O60902 331 aaPredicted RBP22.8■■□□□ 1.24
CLK3-202ENST00000395066 GTF2IP78347 998 aa22.8■■□□□ 1.24
CLK3-202ENST00000395066 HGSNATQ68CP4 663 aa22.8■■□□□ 1.24
CLK3-202ENST00000395066 PDXDC1Q6P996 788 aa22.8■■□□□ 1.24
CLK3-202ENST00000395066 RABEP2Q9H5N1 569 aa22.8■■□□□ 1.24
CLK3-202ENST00000395066 DDX25Q9UHL0 483 aaKnown RBP22.8■■□□□ 1.24
CLK3-202ENST00000395066 ZNF831Q5JPB2 1677 aa22.8■■□□□ 1.24
CLK3-202ENST00000395066 C6orf229H3BNL8 230 aa22.79■■□□□ 1.24
CLK3-202ENST00000395066 RGL2O15211 777 aa22.79■■□□□ 1.24
CLK3-202ENST00000395066 NT5C2P49902 561 aa22.79■■□□□ 1.24
CLK3-202ENST00000395066 DNAJC19Q96DA6 116 aa22.79■■□□□ 1.24
CLK3-202ENST00000395066 GOLGA6BA6NDN3 693 aa22.79■■□□□ 1.24
CLK3-202ENST00000395066 TLR2O60603 784 aa22.79■■□□□ 1.24
CLK3-202ENST00000395066 IL1R1P14778 569 aa22.79■■□□□ 1.24
CLK3-202ENST00000395066 LRRC63Q05C16 580 aa22.79■■□□□ 1.24
CLK3-202ENST00000395066 EHHADHQ08426 723 aa22.79■■□□□ 1.24
CLK3-202ENST00000395066 KCTD19Q17RG1 926 aaPredicted RBP22.79■■□□□ 1.24
CLK3-202ENST00000395066 CCDC40Q4G0X9 1142 aa22.79■■□□□ 1.24
CLK3-202ENST00000395066 TMEM119Q4V9L6 283 aa22.79■■□□□ 1.24
CLK3-202ENST00000395066 CCDC84Q86UT8 332 aaPredicted RBP22.79■■□□□ 1.24
CLK3-202ENST00000395066 MYOCDQ8IZQ8 938 aa22.79■■□□□ 1.24
CLK3-202ENST00000395066 AENQ8WTP8 325 aaKnown RBP22.79■■□□□ 1.24
CLK3-202ENST00000395066 USP17L10C9JJH3 530 aa22.78■■□□□ 1.24
CLK3-202ENST00000395066 CCDC181Q5TID7 509 aa22.78■■□□□ 1.24
CLK3-202ENST00000395066 CCDC70Q6NSX1 233 aa22.78■■□□□ 1.24
CLK3-202ENST00000395066 EFCAB13Q8IY85 973 aa22.78■■□□□ 1.24
CLK3-202ENST00000395066 TLR10Q9BXR5 811 aa22.78■■□□□ 1.24
CLK3-202ENST00000395066 FAM184BQ9ULE4 1060 aa22.78■■□□□ 1.24
CLK3-202ENST00000395066 GOLGA6CA6NDK9 693 aa22.78■■□□□ 1.24
CLK3-202ENST00000395066 NOL4O94818 638 aa22.78■■□□□ 1.24
CLK3-202ENST00000395066 GOLGA6DP0CG33 693 aa22.78■■□□□ 1.24
CLK3-202ENST00000395066 RBM12Q9NTZ6 932 aaKnown RBP22.78■■□□□ 1.24
CLK3-202ENST00000395066 PANK4Q9NVE7 773 aa22.78■■□□□ 1.24
CLK3-202ENST00000395066 GOLGA6AQ9NYA3 693 aa22.78■■□□□ 1.24
CLK3-202ENST00000395066 PACSIN2Q9UNF0 486 aaPredicted RBP22.78■■□□□ 1.24
CLK3-202ENST00000395066 LCA5LO95447 670 aa22.78■■□□□ 1.24
CLK3-202ENST00000395066 POLR2FP61218 127 aaKnown RBP22.78■■□□□ 1.24
CLK3-202ENST00000395066 SHROOM1Q2M3G4 852 aaPredicted RBP22.78■■□□□ 1.24
CLK3-202ENST00000395066 ASTE1Q2TB18 679 aaPredicted RBP22.78■■□□□ 1.24
CLK3-202ENST00000395066 DNAAF5Q86Y56 855 aa22.78■■□□□ 1.24
CLK3-202ENST00000395066 ALS2CR12Q96Q35 445 aa22.78■■□□□ 1.24
CLK3-202ENST00000395066 LSM14BQ9BX40 385 aaKnown RBP22.78■■□□□ 1.24
CLK3-202ENST00000395066 RAB34Q9BZG1 259 aa22.78■■□□□ 1.24
CLK3-202ENST00000395066 EHD4Q9H223 541 aa22.78■■□□□ 1.24
CLK3-202ENST00000395066 HYOU1Q9Y4L1 999 aa22.78■■□□□ 1.24
CLK3-202ENST00000395066 USP17L15C9J2P7 530 aa22.77■■□□□ 1.24
CLK3-202ENST00000395066 USP17L13C9JLJ4 530 aa22.77■■□□□ 1.24
CLK3-202ENST00000395066 USP17L11C9JVI0 530 aa22.77■■□□□ 1.24
CLK3-202ENST00000395066 USP17L18D6R9N7 530 aa22.77■■□□□ 1.24
CLK3-202ENST00000395066 USP17L22D6RA61 530 aa22.77■■□□□ 1.24
CLK3-202ENST00000395066 USP17L17D6RBQ6 530 aa22.77■■□□□ 1.24
CLK3-202ENST00000395066 USP17L19D6RCP7 530 aa22.77■■□□□ 1.24
CLK3-202ENST00000395066 USP17L20D6RJB6 530 aa22.77■■□□□ 1.24
CLK3-202ENST00000395066 PLCG2P16885 1265 aa22.77■■□□□ 1.24
CLK3-202ENST00000395066 SMARCA1P28370 1054 aa22.77■■□□□ 1.24
CLK3-202ENST00000395066 NOVP48745 357 aa22.77■■□□□ 1.24
CLK3-202ENST00000395066 RNASE9P60153 205 aaKnown RBP22.77■■□□□ 1.24
CLK3-202ENST00000395066 USP17L24Q0WX57 530 aa22.77■■□□□ 1.24
CLK3-202ENST00000395066 KLHDC7AQ5VTJ3 777 aa22.77■■□□□ 1.24
CLK3-202ENST00000395066 USP17L6PQ6QN14 398 aa22.77■■□□□ 1.24
CLK3-202ENST00000395066 MMGT1Q8N4V1 131 aa22.77■■□□□ 1.24
CLK3-202ENST00000395066 TSG101Q99816 390 aa22.77■■□□□ 1.24
CLK3-202ENST00000395066 ZHX3Q9H4I2 956 aa22.77■■□□□ 1.24
CLK3-202ENST00000395066 KIAA1024Q9UPX6 916 aa22.77■■□□□ 1.24
CLK3-202ENST00000395066 ZSCAN5CA6NGD5 496 aaPredicted RBP22.77■■□□□ 1.23
CLK3-202ENST00000395066 MPHOSPH10O00566 681 aaKnown RBP22.77■■□□□ 1.23
CLK3-202ENST00000395066 FTCDO95954 541 aa22.77■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms