RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 KRT33BQ14525 404 aa13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 TMED2Q15363 201 aa13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 ATG16L1Q676U5 607 aa13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 CDHR1Q96JP9 859 aa13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 TEKT2Q9UIF3 430 aa13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 NR2F2P24468 414 aa13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 NDUFA8P51970 172 aa13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 EIF4A1P60842 406 aaKnown RBP13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 WDR11Q9BZH6 1224 aa13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 SUDS3Q9H7L9 328 aaPredicted RBP13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 CNOT10Q9H9A5 744 aaKnown RBP13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 hCG_1984214I3L0E3 225 aa13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 GYG1P46976 350 aa13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 SURF1Q15526 300 aa13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 NAA35Q5VZE5 725 aa13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 ZNF713Q8N859 430 aaPredicted RBP13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 ZNF215Q9UL58 517 aaPredicted RBP13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 ARHGAP27Q6ZUM4 889 aa13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 PACSIN2Q9UNF0 486 aaPredicted RBP13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 KIAA1841Q6NSI8 718 aa13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 NDUFAF2Q8N183 169 aa13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 DHX38Q92620 1227 aaKnown RBP13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 USP28Q96RU2 1077 aa13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 KRT82Q9NSB4 513 aa13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 SHANK2Q9UPX8 1470 aa13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 DOK7Q18PE1 504 aa13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 DNAJC24Q6P3W2 148 aa13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 FBXO41Q8TF61 875 aa13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 GCFC2P16383 781 aaKnown RBP13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 HSPA6P17066 643 aa13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 BCAMP50895 628 aa13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 KIAA0825Q8IV33 1275 aa13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 FAM186BQ8IYM0 893 aa13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 SNX1Q13596 522 aa13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 GIPC2Q8TF65 315 aa13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 GSDMAQ96QA5 445 aa13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 ANGPTL2Q9UKU9 493 aa13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 TMEM247A6NEH6 219 aa13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 MYL1P05976 194 aa13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 SOX5P35711 763 aa13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 ARL13BQ3SXY8 428 aa13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 RABGGTAQ92696 567 aa13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 CEP19Q96LK0 163 aa13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 LRRC4Q9HBW1 653 aa13.84□□□□□ -0.19
CCDC88C-204ENST00000389857 PYGLP06737 847 aa13.83□□□□□ -0.19
CCDC88C-204ENST00000389857 CIITAP33076 1130 aa13.83□□□□□ -0.19
CCDC88C-204ENST00000389857 ARHGDIAP52565 204 aa13.83□□□□□ -0.19
CCDC88C-204ENST00000389857 CYP4A11Q02928 519 aa13.83□□□□□ -0.19
CCDC88C-204ENST00000389857 FAM135BQ49AJ0 1406 aa13.83□□□□□ -0.19
CCDC88C-204ENST00000389857 SLC4A1P02730 911 aa13.83□□□□□ -0.19
CCDC88C-204ENST00000389857 FAM149B1Q96BN6 582 aa13.83□□□□□ -0.19
CCDC88C-204ENST00000389857 PCDHA7Q9UN72 937 aa13.83□□□□□ -0.19
CCDC88C-204ENST00000389857 PGRMC1O00264 195 aaKnown RBP13.83□□□□□ -0.2
CCDC88C-204ENST00000389857 MT-ND3P03897 115 aa13.83□□□□□ -0.2
CCDC88C-204ENST00000389857 ETF1P62495 437 aaKnown RBP13.83□□□□□ -0.2
CCDC88C-204ENST00000389857 ARMC9Q7Z3E5 817 aa13.83□□□□□ -0.2
CCDC88C-204ENST00000389857 INO80B-WBP1J3KQ70 363 aa13.83□□□□□ -0.2
CCDC88C-204ENST00000389857 PPEF1O14829 653 aaPredicted RBP13.83□□□□□ -0.2
CCDC88C-204ENST00000389857 PFDN1O60925 122 aa13.83□□□□□ -0.2
CCDC88C-204ENST00000389857 FMNL1O95466 1100 aaPredicted RBP13.83□□□□□ -0.2
CCDC88C-204ENST00000389857 PAMP19021 973 aa13.83□□□□□ -0.2
CCDC88C-204ENST00000389857 BZW1Q7L1Q6 419 aaKnown RBP13.83□□□□□ -0.2
CCDC88C-204ENST00000389857 INO80BQ9C086 356 aaPredicted RBP13.83□□□□□ -0.2
CCDC88C-204ENST00000389857 CLIC4Q9Y696 253 aa13.83□□□□□ -0.2
CCDC88C-204ENST00000389857 MAP3K7O43318 606 aa13.83□□□□□ -0.2
CCDC88C-204ENST00000389857 PRPSAP2O60256 369 aa13.83□□□□□ -0.2
CCDC88C-204ENST00000389857 PMLP29590 882 aa13.83□□□□□ -0.2
CCDC88C-204ENST00000389857 LIG3P49916 1009 aa13.83□□□□□ -0.2
CCDC88C-204ENST00000389857 CHRNDQ07001 517 aa13.83□□□□□ -0.2
CCDC88C-204ENST00000389857 SIX6OS1Q8N1H7 587 aa13.83□□□□□ -0.2
CCDC88C-204ENST00000389857 RNF139Q8WU17 664 aa13.83□□□□□ -0.2
CCDC88C-204ENST00000389857 CFAP36Q96G28 342 aa13.83□□□□□ -0.2
CCDC88C-204ENST00000389857 PPP1R13BQ96KQ4 1090 aa13.83□□□□□ -0.2
CCDC88C-204ENST00000389857 TOM1L1O75674 476 aa13.83□□□□□ -0.2
CCDC88C-204ENST00000389857 SEPT2Q15019 361 aa13.83□□□□□ -0.2
CCDC88C-204ENST00000389857 ZNF804BA4D1E1 1349 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 XDHP47989 1333 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 A0A0D9SFI3 127 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 SLMAPQ14BN4 828 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 SPOPLQ6IQ16 392 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 CLIC6Q96NY7 704 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 PDE11AQ9HCR9 933 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 TMEM63CQ9P1W3 806 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 RNF14Q9UBS8 474 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 RGS12O14924 1447 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 NPC1L1Q9UHC9 1359 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 EEF1B2P24534 225 aaKnown RBP13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 IFNA8P32881 189 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 EPHB1P54762 984 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 NOP14P78316 857 aaKnown RBP13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 MAN2A1Q16706 1144 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 ZNF658Q5TYW1 1059 aaPredicted RBP13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 ARMCX2Q7L311 632 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 RNF217Q8TC41 542 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 P2RX5Q93086 422 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 KIFC3Q9BVG8 833 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 CDC23Q9UJX2 597 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 KSR1Q8IVT5 923 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms