RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 B4DLN1 442 aa19.55■□□□□ 0.72
SQSTM1-202ENST00000389805 TXKP42681 527 aa19.55■□□□□ 0.72
SQSTM1-202ENST00000389805 DNA2P51530 1060 aa19.55■□□□□ 0.72
SQSTM1-202ENST00000389805 PROM2Q8N271 834 aa19.55■□□□□ 0.72
SQSTM1-202ENST00000389805 SPATA4Q8NEY3 305 aa19.55■□□□□ 0.72
SQSTM1-202ENST00000389805 DNAJC7Q99615 494 aa19.55■□□□□ 0.72
SQSTM1-202ENST00000389805 ONECUT3O60422 494 aaPredicted RBP19.55■□□□□ 0.72
SQSTM1-202ENST00000389805 PLEKP08567 350 aaPredicted RBP19.55■□□□□ 0.72
SQSTM1-202ENST00000389805 NAA35Q5VZE5 725 aa19.55■□□□□ 0.72
SQSTM1-202ENST00000389805 NEK8Q86SG6 692 aa19.55■□□□□ 0.72
SQSTM1-202ENST00000389805 UIMC1Q96RL1 719 aa19.55■□□□□ 0.72
SQSTM1-202ENST00000389805 MTMR4Q9NYA4 1195 aa19.55■□□□□ 0.72
SQSTM1-202ENST00000389805 PPEF1O14829 653 aaPredicted RBP19.54■□□□□ 0.72
SQSTM1-202ENST00000389805 LSP1P33241 339 aa19.54■□□□□ 0.72
SQSTM1-202ENST00000389805 CYLC1P35663 651 aaPredicted RBP19.54■□□□□ 0.72
SQSTM1-202ENST00000389805 IQCEQ6IPM2 695 aa19.54■□□□□ 0.72
SQSTM1-202ENST00000389805 KRT25Q7Z3Z0 450 aa19.54■□□□□ 0.72
SQSTM1-202ENST00000389805 EHBP1Q8NDI1 1231 aa19.54■□□□□ 0.72
SQSTM1-202ENST00000389805 TBC1D22AQ8WUA7 517 aa19.54■□□□□ 0.72
SQSTM1-202ENST00000389805 NKRFO15226 690 aaKnown RBP eCLIP19.54■□□□□ 0.724e-8■□□□□ 9.4
SQSTM1-202ENST00000389805 NCK2O43639 380 aa19.54■□□□□ 0.72
SQSTM1-202ENST00000389805 MOCS3O95396 460 aa19.54■□□□□ 0.72
SQSTM1-202ENST00000389805 FCER1AP12319 257 aa19.54■□□□□ 0.72
SQSTM1-202ENST00000389805 GNA11P29992 359 aa19.54■□□□□ 0.72
SQSTM1-202ENST00000389805 KIF5AQ12840 1032 aa19.54■□□□□ 0.72
SQSTM1-202ENST00000389805 CCDC43Q96MW1 224 aaKnown RBP19.54■□□□□ 0.72
SQSTM1-202ENST00000389805 KCNQ5Q9NR82 932 aa19.54■□□□□ 0.72
SQSTM1-202ENST00000389805 ZSCAN5CA6NGD5 496 aaPredicted RBP19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 CLGNO14967 610 aa19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 HDLBPQ00341 1268 aaKnown RBP19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 STK4Q13043 487 aa19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 TTBK2Q6IQ55 1244 aa19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 CEP57Q86XR8 500 aa19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 IFT81Q8WYA0 676 aa19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 MMTAG2Q9BU76 263 aaKnown RBP19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 CAPN11Q9UMQ6 739 aa19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 SNX12Q9UMY4 172 aa19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 MYH10P35580 1976 aa19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 FSBPO95073 299 aa19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 SF3B2Q13435 895 aaKnown RBP19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 SLF2Q8IX21 1173 aa19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 REXO1Q8N1G1 1221 aaKnown RBP19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 ANKRD13CQ8N6S4 541 aa19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 N4BP2L2Q92802 583 aaPredicted RBP19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 GJA10Q969M2 543 aa19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 TRIM47Q96LD4 638 aa19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 CRAMP1Q96RY5 1269 aa19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 KLC4Q9NSK0 619 aa19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 ZNHIT6Q9NWK9 470 aaKnown RBP19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 EDIL3O43854 480 aa19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 FAM153BP0C7A2 387 aa19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 SLC16A2P36021 539 aa19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 GUCY2FP51841 1108 aa19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 NAP1L1P55209 391 aaKnown RBP19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 SKOR1P84550 965 aa19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 FAM153CQ494X1 144 aa19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 CCDC181Q5TID7 509 aa19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 USP40Q9NVE5 1235 aa19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 FAM153AQ9UHL3 310 aa19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 PCDHAC2Q9Y5I4 1007 aa19.53■□□□□ 0.72
SQSTM1-202ENST00000389805 H7C1D1 291 aa19.52■□□□□ 0.72
SQSTM1-202ENST00000389805 TDP2O95551 362 aa19.52■□□□□ 0.72
SQSTM1-202ENST00000389805 PRPHP41219 470 aa19.52■□□□□ 0.72
SQSTM1-202ENST00000389805 NT5C2P49902 561 aa19.52■□□□□ 0.72
SQSTM1-202ENST00000389805 EPHB4P54760 987 aa19.52■□□□□ 0.72
SQSTM1-202ENST00000389805 GIMAP8Q8ND71 665 aaPredicted RBP19.52■□□□□ 0.72
SQSTM1-202ENST00000389805 ZNF473Q8WTR7 871 aaKnown RBP19.52■□□□□ 0.72
SQSTM1-202ENST00000389805 RIOX1Q9H6W3 641 aa19.52■□□□□ 0.72
SQSTM1-202ENST00000389805 MYH1P12882 1939 aa19.52■□□□□ 0.72
SQSTM1-202ENST00000389805 LGALS16A8MUM7 142 aa19.52■□□□□ 0.71
SQSTM1-202ENST00000389805 ZNF263O14978 683 aa19.52■□□□□ 0.71
SQSTM1-202ENST00000389805 SLC37A4O43826 429 aa19.52■□□□□ 0.71
SQSTM1-202ENST00000389805 RHOBTB3O94955 611 aa19.52■□□□□ 0.71
SQSTM1-202ENST00000389805 GABPAQ06546 454 aa19.52■□□□□ 0.71
SQSTM1-202ENST00000389805 PDE4DQ08499 809 aa19.52■□□□□ 0.71
SQSTM1-202ENST00000389805 KCTD19Q17RG1 926 aaPredicted RBP19.52■□□□□ 0.71
SQSTM1-202ENST00000389805 SHROOM1Q2M3G4 852 aaPredicted RBP19.52■□□□□ 0.71
SQSTM1-202ENST00000389805 MMGT1Q8N4V1 131 aa19.52■□□□□ 0.71
SQSTM1-202ENST00000389805 TRIM9Q9C026 710 aa19.52■□□□□ 0.71
SQSTM1-202ENST00000389805 ZC3H12CQ9C0D7 883 aaKnown RBP19.52■□□□□ 0.71
SQSTM1-202ENST00000389805 QTRT2Q9H974 415 aaKnown RBP19.52■□□□□ 0.71
SQSTM1-202ENST00000389805 STIM2Q9P246 746 aa19.52■□□□□ 0.71
SQSTM1-202ENST00000389805 FRMD3A2A2Y4 597 aa19.51■□□□□ 0.71
SQSTM1-202ENST00000389805 FAM196BA6NMK8 535 aa19.51■□□□□ 0.71
SQSTM1-202ENST00000389805 LAD1O00515 517 aa19.51■□□□□ 0.71
SQSTM1-202ENST00000389805 CACNB3P54284 484 aa19.51■□□□□ 0.71
SQSTM1-202ENST00000389805 ASIC1P78348 528 aa19.51■□□□□ 0.71
SQSTM1-202ENST00000389805 HAUS3Q68CZ6 603 aa19.51■□□□□ 0.71
SQSTM1-202ENST00000389805 ZFPM1Q8IX07 1006 aa19.51■□□□□ 0.71
SQSTM1-202ENST00000389805 MS4A14Q96JA4 679 aa19.51■□□□□ 0.71
SQSTM1-202ENST00000389805 TRPC5Q9UL62 973 aaPredicted RBP19.51■□□□□ 0.71
SQSTM1-202ENST00000389805 NFU1Q9UMS0 254 aa19.51■□□□□ 0.71
SQSTM1-202ENST00000389805 UBR3Q6ZT12 1888 aa19.51■□□□□ 0.71
SQSTM1-202ENST00000389805 CHUKO15111 745 aa19.51■□□□□ 0.71
SQSTM1-202ENST00000389805 ATP2C2O75185 946 aa19.51■□□□□ 0.71
SQSTM1-202ENST00000389805 HPDP32754 393 aaPredicted RBP19.51■□□□□ 0.71
SQSTM1-202ENST00000389805 NFIAQ12857 509 aa19.51■□□□□ 0.71
SQSTM1-202ENST00000389805 UBE2SQ16763 222 aa19.51■□□□□ 0.71
SQSTM1-202ENST00000389805 CCDC40Q4G0X9 1142 aa19.51■□□□□ 0.71
SQSTM1-202ENST00000389805 SP8Q8IXZ3 490 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms