RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 RDH13Q8NBN7 331 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 ANKRD36BP1Q96IX9 119 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 ZFYVE19Q96K21 471 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 BEGAINQ9BUH8 593 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 TBC1D23Q9NUY8 699 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 TBK1Q9UHD2 729 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 LCMT1Q9UIC8 334 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 MECOMQ03112 1051 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 AP1B1Q10567 949 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 CEP78Q5JTW2 689 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 ARMC2Q8NEN0 867 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 RMDN2Q96LZ7 410 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 BLZF1Q9H2G9 400 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 SLC4A1P02730 911 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 ZCRB1Q8TBF4 217 aaKnown RBP12.53□□□□□ -0.4
VPS13A-205ENST00000376636 ZFYVE9O95405 1425 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 POLGP54098 1239 aaPredicted RBP12.53□□□□□ -0.4
VPS13A-205ENST00000376636 POLR2FP61218 127 aaKnown RBP12.53□□□□□ -0.4
VPS13A-205ENST00000376636 PDIK1LQ8N165 341 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 ARHGEF1Q92888 912 aaKnown RBP12.53□□□□□ -0.4
VPS13A-205ENST00000376636 TMEM245Q9H330 911 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 RANBP1P43487 201 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 TFAP4Q01664 338 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 RASSF7Q02833 373 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 HIF1AQ16665 826 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 CCDC184Q52MB2 194 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 EXOC8Q8IYI6 725 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 TRMT44Q8IYL2 757 aaKnown RBP12.53□□□□□ -0.4
VPS13A-205ENST00000376636 BASP1P80723 227 aaKnown RBP12.53□□□□□ -0.4
VPS13A-205ENST00000376636 ARL13BQ3SXY8 428 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 CHUKO15111 745 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 RPN1P04843 607 aaKnown RBP12.53□□□□□ -0.4
VPS13A-205ENST00000376636 BRD2P25440 801 aaKnown RBP12.53□□□□□ -0.4
VPS13A-205ENST00000376636 PPP1R13BQ96KQ4 1090 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 PCDHA12Q9UN75 941 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 PRG3Q9Y2Y8 225 aaPredicted RBP12.53□□□□□ -0.4
VPS13A-205ENST00000376636 PCF11O94913 1555 aaKnown RBP12.53□□□□□ -0.4
VPS13A-205ENST00000376636 NBPF20Q3BBV1 942 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 CYP4F22Q6NT55 531 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 DARS2Q6PI48 645 aaKnown RBP12.53□□□□□ -0.4
VPS13A-205ENST00000376636 APPBP2Q92624 585 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 LAD1O00515 517 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 CFBP00751 764 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 NNTQ13423 1086 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 CCNYQ8ND76 341 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 RNF103-CHMP3A0A140T963 221 aa12.52□□□□□ -0.4
VPS13A-205ENST00000376636 AKAP4Q5JQC9 854 aa12.52□□□□□ -0.4
VPS13A-205ENST00000376636 PDHA1P08559 390 aa12.52□□□□□ -0.4
VPS13A-205ENST00000376636 CUEDC2Q9H467 287 aa12.52□□□□□ -0.4
VPS13A-205ENST00000376636 ZNF711Q9Y462 761 aa12.52□□□□□ -0.4
VPS13A-205ENST00000376636 PCDHB4Q9Y5E5 795 aa12.52□□□□□ -0.4
VPS13A-205ENST00000376636 SLC4A7Q9Y6M7 1214 aa12.52□□□□□ -0.4
VPS13A-205ENST00000376636 GPAA1O43292 621 aa12.52□□□□□ -0.4
VPS13A-205ENST00000376636 SNX2O60749 519 aa12.52□□□□□ -0.4
VPS13A-205ENST00000376636 SMCR8Q8TEV9 937 aaPredicted RBP12.52□□□□□ -0.41
VPS13A-205ENST00000376636 DCDC2Q9UHG0 476 aa12.52□□□□□ -0.41
VPS13A-205ENST00000376636 FAM83GA6ND36 823 aa12.52□□□□□ -0.41
VPS13A-205ENST00000376636 ANP32DO95626 131 aa12.52□□□□□ -0.41
VPS13A-205ENST00000376636 DHX9Q08211 1270 aaKnown RBP12.52□□□□□ -0.41
VPS13A-205ENST00000376636 DRP2Q13474 957 aa12.52□□□□□ -0.41
VPS13A-205ENST00000376636 CNGA3Q16281 694 aa12.52□□□□□ -0.41
VPS13A-205ENST00000376636 PHACTR3Q96KR7 559 aa12.52□□□□□ -0.41
VPS13A-205ENST00000376636 SEPT3Q9UH03 358 aa12.52□□□□□ -0.41
VPS13A-205ENST00000376636 IQGAP2Q13576 1575 aa12.52□□□□□ -0.41
VPS13A-205ENST00000376636 MAP3K5Q99683 1374 aa12.52□□□□□ -0.41
VPS13A-205ENST00000376636 CIITAP33076 1130 aa12.52□□□□□ -0.41
VPS13A-205ENST00000376636 TMED10P49755 219 aaKnown RBP12.52□□□□□ -0.41
VPS13A-205ENST00000376636 PLTPP55058 493 aa12.52□□□□□ -0.41
VPS13A-205ENST00000376636 NOSTRINQ8IVI9 506 aa12.52□□□□□ -0.41
VPS13A-205ENST00000376636 RAPGEF5Q92565 580 aa12.52□□□□□ -0.41
VPS13A-205ENST00000376636 UIMC1Q96RL1 719 aa12.52□□□□□ -0.41
VPS13A-205ENST00000376636 DDX25Q9UHL0 483 aaKnown RBP12.52□□□□□ -0.41
VPS13A-205ENST00000376636 KPNA7A9QM74 516 aa12.52□□□□□ -0.41
VPS13A-205ENST00000376636 CATSPER3Q86XQ3 398 aa12.52□□□□□ -0.41
VPS13A-205ENST00000376636 JARID2Q92833 1246 aaPredicted RBP12.52□□□□□ -0.41
VPS13A-205ENST00000376636 BLOC1S6Q9UL45 172 aa12.52□□□□□ -0.41
VPS13A-205ENST00000376636 LUZP2Q86TE4 346 aa12.52□□□□□ -0.41
VPS13A-205ENST00000376636 CNPY4Q8N129 248 aa12.52□□□□□ -0.41
VPS13A-205ENST00000376636 PITPNM3Q9BZ71 974 aa12.52□□□□□ -0.41
VPS13A-205ENST00000376636 ZFYVE1Q9HBF4 777 aa12.52□□□□□ -0.41
VPS13A-205ENST00000376636 CAB39Q9Y376 341 aaPredicted RBP12.52□□□□□ -0.41
VPS13A-205ENST00000376636 PRG4Q92954 1404 aaPredicted RBP12.52□□□□□ -0.41
VPS13A-205ENST00000376636 TFDP1Q14186 410 aa12.52□□□□□ -0.41
VPS13A-205ENST00000376636 ADAM9Q13443 819 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 PYROXD1Q8WU10 500 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 ATP8A2Q9NTI2 1148 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 PCDHB15Q9Y5E8 787 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 SSH2Q76I76 1423 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 PODXLO00592 558 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 TCF3P15923 654 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 SMARCA1P28370 1054 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 ST13P50502 369 aaKnown RBP12.51□□□□□ -0.41
VPS13A-205ENST00000376636 DR1Q01658 176 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 TUBGCP3Q96CW5 907 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 ZFP69BQ9UJL9 534 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 ZSCAN9O15535 394 aaPredicted RBP12.51□□□□□ -0.41
VPS13A-205ENST00000376636 MAP4P27816 1152 aaKnown RBP12.51□□□□□ -0.41
VPS13A-205ENST00000376636 TADA2BQ86TJ2 420 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 HORMAD1Q86X24 394 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 B4GALNT2Q8NHY0 566 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms