RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 CCDC170Q8IYT3 715 aa7.15□□□□□ -1.26
SMC1A-202ENST00000375340 OSBPL9Q96SU4 736 aa7.15□□□□□ -1.26
SMC1A-202ENST00000375340 CUEDC2Q9H467 287 aa7.15□□□□□ -1.26
SMC1A-202ENST00000375340 PLTPP55058 493 aa7.15□□□□□ -1.26
SMC1A-202ENST00000375340 CTTNQ14247 550 aaKnown RBP7.15□□□□□ -1.26
SMC1A-202ENST00000375340 NR1I3Q14994 352 aa7.15□□□□□ -1.26
SMC1A-202ENST00000375340 SRBD1Q8N5C6 995 aaKnown RBP7.15□□□□□ -1.26
SMC1A-202ENST00000375340 STIM2Q9P246 746 aa7.15□□□□□ -1.26
SMC1A-202ENST00000375340 NOVA2Q9UNW9 492 aaKnown RBP7.15□□□□□ -1.26
SMC1A-202ENST00000375340 CDK8P49336 464 aa7.15□□□□□ -1.27
SMC1A-202ENST00000375340 RABL6Q3YEC7 729 aaPredicted RBP7.15□□□□□ -1.27
SMC1A-202ENST00000375340 USP49Q70CQ1 688 aa7.15□□□□□ -1.27
SMC1A-202ENST00000375340 ENGASEQ8NFI3 743 aa7.15□□□□□ -1.27
SMC1A-202ENST00000375340 STMN2Q93045 179 aa7.15□□□□□ -1.27
SMC1A-202ENST00000375340 PLA2G4BP0C869 781 aa7.15□□□□□ -1.27
SMC1A-202ENST00000375340 KRT15P19012 456 aa7.15□□□□□ -1.27
SMC1A-202ENST00000375340 IL6STP40189 918 aaPredicted RBP7.15□□□□□ -1.27
SMC1A-202ENST00000375340 APBA1Q02410 837 aa7.15□□□□□ -1.27
SMC1A-202ENST00000375340 PCDHA1Q9Y5I3 950 aa7.15□□□□□ -1.27
SMC1A-202ENST00000375340 CCNE1P24864 410 aa7.15□□□□□ -1.27
SMC1A-202ENST00000375340 SF3B2Q13435 895 aaKnown RBP7.15□□□□□ -1.27
SMC1A-202ENST00000375340 TXNRD1Q16881 649 aa7.15□□□□□ -1.27
SMC1A-202ENST00000375340 RAD54LQ92698 747 aa7.15□□□□□ -1.27
SMC1A-202ENST00000375340 FAM184BQ9ULE4 1060 aa7.15□□□□□ -1.27
SMC1A-202ENST00000375340 BCS1LQ9Y276 419 aa7.15□□□□□ -1.27
SMC1A-202ENST00000375340 ATF7P17544 494 aaPredicted RBP7.15□□□□□ -1.27
SMC1A-202ENST00000375340 STRN3Q13033 797 aa7.15□□□□□ -1.27
SMC1A-202ENST00000375340 KAZALD1Q96I82 304 aa7.15□□□□□ -1.27
SMC1A-202ENST00000375340 SH3GLB2Q9NR46 395 aa7.15□□□□□ -1.27
SMC1A-202ENST00000375340 FHOD1Q9Y613 1164 aa7.15□□□□□ -1.27
SMC1A-202ENST00000375340 CEMIPQ8WUJ3 1361 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 PDE6CP51160 858 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 USP14P54578 494 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 COASYQ13057 564 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 TBK1Q9UHD2 729 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 CD2APQ9Y5K6 639 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 UTYO14607 1347 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 ATP2A2P16615 1042 aaKnown RBP7.14□□□□□ -1.27
SMC1A-202ENST00000375340 AK8Q96MA6 479 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 TSNARE1Q96NA8 513 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 HPCAL4Q9UM19 191 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 EXOC7Q9UPT5 735 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 ATF2P15336 505 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 CD44P16070 742 aaKnown RBP7.14□□□□□ -1.27
SMC1A-202ENST00000375340 AZI2Q9H6S1 392 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 XRN1Q8IZH2 1706 aaKnown RBP7.14□□□□□ -1.27
SMC1A-202ENST00000375340 PGRMC1O00264 195 aaKnown RBP7.14□□□□□ -1.27
SMC1A-202ENST00000375340 GUCY1A3Q02108 690 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 COL9A3Q14050 684 aaPredicted RBP7.14□□□□□ -1.27
SMC1A-202ENST00000375340 CERKLQ49MI3 558 aaPredicted RBP7.14□□□□□ -1.27
SMC1A-202ENST00000375340 ANKRD40Q6AI12 368 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 OGFOD1Q8N543 542 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 CCDC89Q8N998 374 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 RETREG2Q8NC44 543 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 THOC1Q96FV9 657 aaKnown RBP7.14□□□□□ -1.27
SMC1A-202ENST00000375340 SLIT1O75093 1534 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 SEMA3EO15041 775 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 PRDX5P30044 214 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 TMED2Q15363 201 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 VSIG1Q86XK7 387 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 KIAA0825Q8IV33 1275 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 PPM1KQ8N3J5 372 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 MYCBPQ99417 103 aaPredicted RBP7.14□□□□□ -1.27
SMC1A-202ENST00000375340 PHF20Q9BVI0 1012 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 UBE2TQ9NPD8 197 aaPredicted RBP7.14□□□□□ -1.27
SMC1A-202ENST00000375340 PPEF1O14829 653 aaPredicted RBP7.14□□□□□ -1.27
SMC1A-202ENST00000375340 TTLL1O95922 423 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 PIK3CAP42336 1068 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 FXR1P51114 621 aaKnown RBP eCLIP7.14□□□□□ -1.27
SMC1A-202ENST00000375340 ALS2CLQ60I27 953 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 REXO1L1PQ8IX06 675 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 RIN2Q8WYP3 895 aaPredicted RBP7.14□□□□□ -1.27
SMC1A-202ENST00000375340 SMC6Q96SB8 1091 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 A6NNZ2 444 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 TNNI1P19237 187 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 MAP3K9P80192 1104 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 TUBB8Q3ZCM7 444 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 CCDC127Q96BQ5 260 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 ISCA1Q9BUE6 129 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 BRIP1Q9BX63 1249 aa7.14□□□□□ -1.27
SMC1A-202ENST00000375340 KRT19P08727 400 aa7.13□□□□□ -1.27
SMC1A-202ENST00000375340 PCP11498 1178 aaKnown RBP7.13□□□□□ -1.27
SMC1A-202ENST00000375340 LMNB1P20700 586 aa7.13□□□□□ -1.27
SMC1A-202ENST00000375340 DR1Q01658 176 aa7.13□□□□□ -1.27
SMC1A-202ENST00000375340 ICA1Q05084 483 aa7.13□□□□□ -1.27
SMC1A-202ENST00000375340 TBC1D9BQ66K14 1250 aa7.13□□□□□ -1.27
SMC1A-202ENST00000375340 FBXO11Q86XK2 927 aa7.13□□□□□ -1.27
SMC1A-202ENST00000375340 FAM178BQ8IXR5 827 aa7.13□□□□□ -1.27
SMC1A-202ENST00000375340 KCNB2Q92953 911 aa7.13□□□□□ -1.27
SMC1A-202ENST00000375340 LRRC1Q9BTT6 524 aa7.13□□□□□ -1.27
SMC1A-202ENST00000375340 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.13□□□□□ -1.27
SMC1A-202ENST00000375340 GYPCP04921 128 aa7.13□□□□□ -1.27
SMC1A-202ENST00000375340 SLFN13Q68D06 897 aa7.13□□□□□ -1.27
SMC1A-202ENST00000375340 NSMFQ6X4W1 530 aa7.13□□□□□ -1.27
SMC1A-202ENST00000375340 CCDC197Q8NCU1 140 aa7.13□□□□□ -1.27
SMC1A-202ENST00000375340 BSDC1Q9NW68 430 aaPredicted RBP7.13□□□□□ -1.27
SMC1A-202ENST00000375340 STK24Q9Y6E0 443 aa7.13□□□□□ -1.27
SMC1A-202ENST00000375340 XDHP47989 1333 aa7.13□□□□□ -1.27
SMC1A-202ENST00000375340 PLA2G4AP47712 749 aa7.13□□□□□ -1.27
SMC1A-202ENST00000375340 KRT26Q7Z3Y9 468 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms