RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 PPP1R18Q6NYC8 613 aa21.78■■□□□ 1.08
CKS1B-203ENST00000368439 XRRA1Q6P2D8 792 aa21.78■■□□□ 1.08
CKS1B-203ENST00000368439 NFRKBQ6P4R8 1299 aa21.78■■□□□ 1.08
CKS1B-203ENST00000368439 ZNF713Q8N859 430 aaPredicted RBP21.78■■□□□ 1.08
CKS1B-203ENST00000368439 TRMT13Q9NUP7 481 aaKnown RBP21.78■■□□□ 1.08
CKS1B-203ENST00000368439 BARHL2Q9NY43 387 aa21.78■■□□□ 1.08
CKS1B-203ENST00000368439 RTEL1Q9NZ71 1219 aa21.78■■□□□ 1.08
CKS1B-203ENST00000368439 UMODL1Q5DID0 1318 aa21.78■■□□□ 1.08
CKS1B-203ENST00000368439 CCDC196A0A1B0GTZ2 297 aa21.77■■□□□ 1.08
CKS1B-203ENST00000368439 PDIA3P30101 505 aaKnown RBP21.77■■□□□ 1.08
CKS1B-203ENST00000368439 DGKDQ16760 1214 aa21.77■■□□□ 1.08
CKS1B-203ENST00000368439 PFKFB3Q16875 520 aaPredicted RBP21.77■■□□□ 1.08
CKS1B-203ENST00000368439 HSDL1Q3SXM5 330 aa21.77■■□□□ 1.08
CKS1B-203ENST00000368439 NOC4LQ9BVI4 516 aaKnown RBP21.77■■□□□ 1.08
CKS1B-203ENST00000368439 PPP1R12CQ9BZL4 782 aa21.77■■□□□ 1.08
CKS1B-203ENST00000368439 RIC8AQ9NPQ8 531 aa21.77■■□□□ 1.08
CKS1B-203ENST00000368439 PCDHA6Q9UN73 950 aa21.77■■□□□ 1.08
CKS1B-203ENST00000368439 PCDHA8Q9Y5H6 950 aa21.77■■□□□ 1.08
CKS1B-203ENST00000368439 CYP46A1Q9Y6A2 500 aa21.77■■□□□ 1.08
CKS1B-203ENST00000368439 SORBS3O60504 671 aa21.76■■□□□ 1.07
CKS1B-203ENST00000368439 CYP2C18P33260 490 aa21.76■■□□□ 1.07
CKS1B-203ENST00000368439 NAPAP54920 295 aa21.76■■□□□ 1.07
CKS1B-203ENST00000368439 PTPN11Q06124 597 aaPredicted RBP21.76■■□□□ 1.07
CKS1B-203ENST00000368439 PKN1Q16512 942 aa21.76■■□□□ 1.07
CKS1B-203ENST00000368439 GNPTABQ3T906 1256 aa21.76■■□□□ 1.07
CKS1B-203ENST00000368439 C16orf59Q7L2K0 433 aa21.76■■□□□ 1.07
CKS1B-203ENST00000368439 TEX2Q8IWB9 1127 aa21.76■■□□□ 1.07
CKS1B-203ENST00000368439 UPF3BQ9BZI7 483 aaKnown RBP21.76■■□□□ 1.07
CKS1B-203ENST00000368439 PRPF3O43395 683 aaKnown RBP21.75■■□□□ 1.07
CKS1B-203ENST00000368439 FIBPO43427 364 aa21.75■■□□□ 1.07
CKS1B-203ENST00000368439 SESTD1Q86VW0 696 aa21.75■■□□□ 1.07
CKS1B-203ENST00000368439 SPATA33Q96N06 139 aa21.75■■□□□ 1.07
CKS1B-203ENST00000368439 CTAGE1Q96RT6 745 aa21.75■■□□□ 1.07
CKS1B-203ENST00000368439 HIPK3Q9H422 1215 aa21.75■■□□□ 1.07
CKS1B-203ENST00000368439 SPDYE3A6NKU9 549 aa21.74■■□□□ 1.07
CKS1B-203ENST00000368439 HAS3O00219 553 aa21.74■■□□□ 1.07
CKS1B-203ENST00000368439 PPFIA4O75335 1185 aa21.74■■□□□ 1.07
CKS1B-203ENST00000368439 F2P00734 622 aa21.74■■□□□ 1.07
CKS1B-203ENST00000368439 SCG2P13521 617 aa21.74■■□□□ 1.07
CKS1B-203ENST00000368439 CSF2RAP15509 400 aa21.74■■□□□ 1.07
CKS1B-203ENST00000368439 ITGB5P18084 799 aa21.74■■□□□ 1.07
CKS1B-203ENST00000368439 CLK2P49760 499 aaKnown RBP21.74■■□□□ 1.07
CKS1B-203ENST00000368439 GPR153Q6NV75 609 aa21.74■■□□□ 1.07
CKS1B-203ENST00000368439 WNT8AQ9H1J5 351 aa21.74■■□□□ 1.07
CKS1B-203ENST00000368439 UBIAD1Q9Y5Z9 338 aa21.74■■□□□ 1.07
CKS1B-203ENST00000368439 SMCO2A6NFE2 343 aa21.73■■□□□ 1.07
CKS1B-203ENST00000368439 ADAMTS3O15072 1205 aa21.73■■□□□ 1.07
CKS1B-203ENST00000368439 SUPT20HL2P0C7V6 817 aa21.73■■□□□ 1.07
CKS1B-203ENST00000368439 ZNF286BP0CG31 522 aa21.73■■□□□ 1.07
CKS1B-203ENST00000368439 CYP2C9P11712 490 aa21.73■■□□□ 1.07
CKS1B-203ENST00000368439 IFNAR1P17181 557 aa21.73■■□□□ 1.07
CKS1B-203ENST00000368439 ADCY7P51828 1080 aa21.73■■□□□ 1.07
CKS1B-203ENST00000368439 FAM47CQ5HY64 1035 aa21.73■■□□□ 1.07
CKS1B-203ENST00000368439 TMEM199Q8N511 208 aa21.73■■□□□ 1.07
CKS1B-203ENST00000368439 PHKBQ93100 1093 aa21.73■■□□□ 1.07
CKS1B-203ENST00000368439 GPRASP2Q96D09 838 aa21.73■■□□□ 1.07
CKS1B-203ENST00000368439 VWCEQ96DN2 955 aa21.73■■□□□ 1.07
CKS1B-203ENST00000368439 IL17RAQ96F46 866 aa21.73■■□□□ 1.07
CKS1B-203ENST00000368439 SENP7Q9BQF6 1050 aa21.73■■□□□ 1.07
CKS1B-203ENST00000368439 C16orf70Q9BSU1 422 aa21.73■■□□□ 1.07
CKS1B-203ENST00000368439 MLXIPQ9HAP2 919 aa21.73■■□□□ 1.07
CKS1B-203ENST00000368439 NCOA5Q9HCD5 579 aaKnown RBP21.73■■□□□ 1.07
CKS1B-203ENST00000368439 TELO2Q9Y4R8 837 aa21.73■■□□□ 1.07
CKS1B-203ENST00000368439 TRIP12Q14669 1992 aaPredicted RBP21.73■■□□□ 1.07
CKS1B-203ENST00000368439 SCN5AQ14524 2016 aa21.73■■□□□ 1.07
CKS1B-203ENST00000368439 PSEN2P49810 448 aa21.72■■□□□ 1.07
CKS1B-203ENST00000368439 CCT2P78371 535 aaKnown RBP21.72■■□□□ 1.07
CKS1B-203ENST00000368439 PPIGQ13427 754 aaKnown RBP eCLIP21.72■■□□□ 1.07
CKS1B-203ENST00000368439 NEDD9Q14511 834 aa21.72■■□□□ 1.07
CKS1B-203ENST00000368439 METTL7BQ6UX53 244 aa21.72■■□□□ 1.07
CKS1B-203ENST00000368439 CYFIP1Q7L576 1253 aa21.72■■□□□ 1.07
CKS1B-203ENST00000368439 NLRX1Q86UT6 975 aa21.72■■□□□ 1.07
CKS1B-203ENST00000368439 ZNF274Q96GC6 653 aaPredicted RBP21.72■■□□□ 1.07
CKS1B-203ENST00000368439 PGBD1Q96JS3 809 aa21.72■■□□□ 1.07
CKS1B-203ENST00000368439 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.72■■□□□ 1.07
CKS1B-203ENST00000368439 LARP6Q9BRS8 491 aaKnown RBP21.72■■□□□ 1.07
CKS1B-203ENST00000368439 TMEM260Q9NX78 707 aa21.72■■□□□ 1.07
CKS1B-203ENST00000368439 TANC1Q9C0D5 1861 aa21.72■■□□□ 1.07
CKS1B-203ENST00000368439 ESYT2A0FGR8 921 aa21.71■■□□□ 1.07
CKS1B-203ENST00000368439 ATP9AO75110 1047 aa21.71■■□□□ 1.07
CKS1B-203ENST00000368439 KCNA2P16389 499 aa21.71■■□□□ 1.07
CKS1B-203ENST00000368439 CCL23P55773 120 aa21.71■■□□□ 1.07
CKS1B-203ENST00000368439 ANAPC15P60006 121 aa21.71■■□□□ 1.07
CKS1B-203ENST00000368439 MFSD10Q14728 455 aa21.71■■□□□ 1.07
CKS1B-203ENST00000368439 TMEM240Q5SV17 173 aa21.71■■□□□ 1.07
CKS1B-203ENST00000368439 GDF6Q6KF10 455 aaPredicted RBP21.71■■□□□ 1.07
CKS1B-203ENST00000368439 GPR20Q99678 358 aa21.71■■□□□ 1.07
CKS1B-203ENST00000368439 RNF26Q9BY78 433 aaPredicted RBP21.71■■□□□ 1.07
CKS1B-203ENST00000368439 ZMYND12Q9H0C1 365 aa21.71■■□□□ 1.07
CKS1B-203ENST00000368439 PDRG1Q9NUG6 133 aa21.71■■□□□ 1.07
CKS1B-203ENST00000368439 HDAC6Q9UBN7 1215 aa21.71■■□□□ 1.07
CKS1B-203ENST00000368439 PPFIA3O75145 1194 aa21.7■■□□□ 1.06
CKS1B-203ENST00000368439 SEC24BO95487 1268 aa21.7■■□□□ 1.06
CKS1B-203ENST00000368439 FOSP01100 380 aaPredicted RBP21.7■■□□□ 1.06
CKS1B-203ENST00000368439 CHMP4BP1P59074 171 aa21.7■■□□□ 1.06
CKS1B-203ENST00000368439 KIAA0753Q2KHM9 967 aa21.7■■□□□ 1.06
CKS1B-203ENST00000368439 RASIP1Q5U651 963 aa21.7■■□□□ 1.06
CKS1B-203ENST00000368439 ALG1Q9BT22 464 aa21.7■■□□□ 1.06
CKS1B-203ENST00000368439 KATNAL1Q9BW62 490 aa21.7■■□□□ 1.06
CKS1B-203ENST00000368439 ANO3Q9BYT9 981 aa21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms