RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 ATG16L1Q676U5 607 aa9.66□□□□□ -0.86
SYNE1-209ENST00000367257 MAP4K1Q92918 833 aa9.66□□□□□ -0.86
SYNE1-209ENST00000367257 BPIFA3Q9BQP9 254 aa9.66□□□□□ -0.86
SYNE1-209ENST00000367257 ANGPTL3Q9Y5C1 460 aa9.66□□□□□ -0.86
SYNE1-209ENST00000367257 NEURL1BA8MQ27 555 aa9.66□□□□□ -0.86
SYNE1-209ENST00000367257 LPXNO60711 386 aa9.66□□□□□ -0.86
SYNE1-209ENST00000367257 PTPREP23469 700 aa9.66□□□□□ -0.86
SYNE1-209ENST00000367257 PSMC2P35998 433 aaKnown RBP9.66□□□□□ -0.86
SYNE1-209ENST00000367257 YARSP54577 528 aaKnown RBP9.66□□□□□ -0.86
SYNE1-209ENST00000367257 LRRC63Q05C16 580 aa9.66□□□□□ -0.86
SYNE1-209ENST00000367257 DMP1Q13316 513 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-209ENST00000367257 MRGBPQ9NV56 204 aa9.66□□□□□ -0.86
SYNE1-209ENST00000367257 ZBTB21Q9ULJ3 1066 aa9.66□□□□□ -0.86
SYNE1-209ENST00000367257 NUB1Q9Y5A7 615 aa9.66□□□□□ -0.86
SYNE1-209ENST00000367257 CRYBG1Q9Y4K1 1723 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 PODXLO00592 558 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 HNRNPCL1O60812 293 aaKnown RBP9.65□□□□□ -0.86
SYNE1-209ENST00000367257 GADD45BO75293 160 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-209ENST00000367257 ECEL1O95672 775 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 SCP2P22307 547 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 IGBP1P78318 339 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 TFAP4Q01664 338 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 RHOT2Q8IXI1 618 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 FAM178BQ8IXR5 827 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 NME8Q8N427 588 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 SH3GLB2Q9NR46 395 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 RCOR1Q9UKL0 485 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 USTQ9Y2C2 406 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 ATP8B3O60423 1300 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 MIF4GDA9UHW6 222 aaKnown RBP9.65□□□□□ -0.86
SYNE1-209ENST00000367257 F8W031 263 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-209ENST00000367257 GPC4O75487 556 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 RXRAP19793 462 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 CHRNA2Q15822 529 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 IFNL3Q8IZI9 196 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 ST13P4Q8IZP2 240 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-209ENST00000367257 ANKRD42Q8N9B4 389 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 PSTPIP2Q9H939 334 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 KIF9Q9HAQ2 790 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 UBAP1Q9NZ09 502 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 PCDHA7Q9UN72 937 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 CFAP65Q6ZU64 1925 aaKnown RBP9.65□□□□□ -0.86
SYNE1-209ENST00000367257 ADGRB2O60241 1585 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 MYO1FO00160 1098 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 AFPP02771 609 aaKnown RBP9.65□□□□□ -0.86
SYNE1-209ENST00000367257 NFKBIAP25963 317 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 CTSWP56202 376 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 GABPAQ06546 454 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 ADAM9Q13443 819 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 TRMT1LQ7Z2T5 733 aaKnown RBP9.65□□□□□ -0.86
SYNE1-209ENST00000367257 ATP6V0A1Q93050 837 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 P2RX5Q93086 422 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 USP28Q96RU2 1077 aa9.65□□□□□ -0.86
SYNE1-209ENST00000367257 CEP170BQ9Y4F5 1589 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-209ENST00000367257 ZBTB24O43167 697 aaPredicted RBP9.65□□□□□ -0.87
SYNE1-209ENST00000367257 FKBP3Q00688 224 aaKnown RBP9.65□□□□□ -0.87
SYNE1-209ENST00000367257 MYL7Q01449 175 aa9.65□□□□□ -0.87
SYNE1-209ENST00000367257 SLC44A4Q53GD3 710 aa9.65□□□□□ -0.87
SYNE1-209ENST00000367257 CCDC80Q76M96 950 aa9.65□□□□□ -0.87
SYNE1-209ENST00000367257 SPC25Q9HBM1 224 aa9.65□□□□□ -0.87
SYNE1-209ENST00000367257 NCOA5Q9HCD5 579 aaKnown RBP9.65□□□□□ -0.87
SYNE1-209ENST00000367257 BSDC1Q9NW68 430 aaPredicted RBP9.65□□□□□ -0.87
SYNE1-209ENST00000367257 NDE1Q9NXR1 346 aa9.65□□□□□ -0.87
SYNE1-209ENST00000367257 ECM2O94769 699 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-209ENST00000367257 TMOD1P28289 359 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 DYMQ7RTS9 669 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.64□□□□□ -0.87
SYNE1-209ENST00000367257 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-209ENST00000367257 NRKQ7Z2Y5 1582 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 A6NJR5 290 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 SLC26A4O43511 780 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 CHMP2AO43633 222 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 SERPING1P05155 500 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 EIF6P56537 245 aaKnown RBP9.64□□□□□ -0.87
SYNE1-209ENST00000367257 TIMM10P62072 90 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 MYO1EQ12965 1108 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 NEK9Q8TD19 979 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 JARID2Q92833 1246 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-209ENST00000367257 ACCSQ96QU6 501 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 TUBGCP2Q9BSJ2 902 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 NOD1Q9Y239 953 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 MAP3K7O43318 606 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 ACTN1P12814 892 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 PCGF5Q86SE9 256 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 KLHL23Q8NBE8 558 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 CEP70Q8NHQ1 597 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 CNOT6LQ96LI5 555 aaKnown RBP9.64□□□□□ -0.87
SYNE1-209ENST00000367257 TTC25Q96NG3 672 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 DDX25Q9UHL0 483 aaKnown RBP9.64□□□□□ -0.87
SYNE1-209ENST00000367257 PCDHA4Q9UN74 947 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 hCG_2014768A0A024R1R8 64 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 GOLGA8MH3BSY2 632 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 RFX1P22670 979 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 PPARGP37231 505 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-209ENST00000367257 INPP1P49441 399 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 ADKP55263 362 aaKnown RBP9.64□□□□□ -0.87
SYNE1-209ENST00000367257 CORO7P57737 925 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 DRP2Q13474 957 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 ZNF449Q6P9G9 518 aa9.64□□□□□ -0.87
SYNE1-209ENST00000367257 WDR75Q8IWA0 830 aaKnown RBP9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms