RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 PRPF38AQ8NAV1 312 aaKnown RBP16.94■□□□□ 0.3
PTPRF-201ENST00000359947 MTRQ99707 1265 aa16.94■□□□□ 0.3
PTPRF-201ENST00000359947 FIS1Q9Y3D6 152 aa16.94■□□□□ 0.3
PTPRF-201ENST00000359947 ABCA5Q8WWZ7 1642 aa16.94■□□□□ 0.3
PTPRF-201ENST00000359947 MAP7D3Q8IWC1 876 aa16.94■□□□□ 0.3
PTPRF-201ENST00000359947 C10orf67Q8IYJ2 551 aa16.94■□□□□ 0.3
PTPRF-201ENST00000359947 FAM135BQ49AJ0 1406 aa16.94■□□□□ 0.3
PTPRF-201ENST00000359947 NR5A1Q13285 461 aa16.94■□□□□ 0.3
PTPRF-201ENST00000359947 OR6B2Q6IFH4 312 aa16.94■□□□□ 0.3
PTPRF-201ENST00000359947 CCDC94Q9BW85 323 aaPredicted RBP16.94■□□□□ 0.3
PTPRF-201ENST00000359947 UBE2TQ9NPD8 197 aaPredicted RBP16.94■□□□□ 0.3
PTPRF-201ENST00000359947 PCK1P35558 622 aa16.94■□□□□ 0.3
PTPRF-201ENST00000359947 ARHGAP42A6NI28 874 aa16.93■□□□□ 0.3
PTPRF-201ENST00000359947 POC1B-GALNT4F8VUJ3 575 aa16.93■□□□□ 0.3
PTPRF-201ENST00000359947 IL1RL1Q01638 556 aa16.93■□□□□ 0.3
PTPRF-201ENST00000359947 BRINP3Q76B58 766 aa16.93■□□□□ 0.3
PTPRF-201ENST00000359947 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.93■□□□□ 0.3
PTPRF-201ENST00000359947 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.93■□□□□ 0.3
PTPRF-201ENST00000359947 STK38LQ9Y2H1 464 aa16.93■□□□□ 0.3
PTPRF-201ENST00000359947 RWDD4Q6NW29 188 aaKnown RBP16.93■□□□□ 0.3
PTPRF-201ENST00000359947 APOA5Q6Q788 366 aa16.93■□□□□ 0.3
PTPRF-201ENST00000359947 HEG1Q9ULI3 1381 aa16.93■□□□□ 0.3
PTPRF-201ENST00000359947 EHHADHQ08426 723 aa16.93■□□□□ 0.3
PTPRF-201ENST00000359947 TRIM58Q8NG06 486 aa16.93■□□□□ 0.3
PTPRF-201ENST00000359947 CALN1Q9BXU9 219 aa16.93■□□□□ 0.3
PTPRF-201ENST00000359947 MAPK4P31152 587 aa16.93■□□□□ 0.3
PTPRF-201ENST00000359947 VCX3BQ9H321 246 aa16.93■□□□□ 0.3
PTPRF-201ENST00000359947 PLEKHG1Q9ULL1 1385 aa16.93■□□□□ 0.3
PTPRF-201ENST00000359947 RASGRF1Q13972 1273 aa16.93■□□□□ 0.3
PTPRF-201ENST00000359947 ZNF449Q6P9G9 518 aa16.93■□□□□ 0.3
PTPRF-201ENST00000359947 SMIM5Q71RC9 77 aa16.93■□□□□ 0.3
PTPRF-201ENST00000359947 KCTD6Q8NC69 237 aa16.93■□□□□ 0.3
PTPRF-201ENST00000359947 OR6B3Q8NGW1 331 aa16.93■□□□□ 0.3
PTPRF-201ENST00000359947 RNF217Q8TC41 542 aa16.93■□□□□ 0.3
PTPRF-201ENST00000359947 BSDC1Q9NW68 430 aaPredicted RBP16.93■□□□□ 0.3
PTPRF-201ENST00000359947 ROBO2Q9HCK4 1378 aa16.93■□□□□ 0.3
PTPRF-201ENST00000359947 GOLGA8CPA6NN73 597 aa16.92■□□□□ 0.3
PTPRF-201ENST00000359947 ZSWIM5Q9P217 1185 aa16.92■□□□□ 0.3
PTPRF-201ENST00000359947 SLC8A2Q9UPR5 921 aa16.92■□□□□ 0.3
PTPRF-201ENST00000359947 GDAQ9Y2T3 454 aa16.92■□□□□ 0.3
PTPRF-201ENST00000359947 ERBB3P21860 1342 aa16.92■□□□□ 0.3
PTPRF-201ENST00000359947 PPP4R4Q6NUP7 873 aa16.92■□□□□ 0.3
PTPRF-201ENST00000359947 NCAPGQ9BPX3 1015 aa16.92■□□□□ 0.3
PTPRF-201ENST00000359947 DISP1Q96F81 1524 aa16.92■□□□□ 0.3
PTPRF-201ENST00000359947 ADCY1Q08828 1119 aa16.92■□□□□ 0.3
PTPRF-201ENST00000359947 TWF2Q6IBS0 349 aaKnown RBP16.92■□□□□ 0.3
PTPRF-201ENST00000359947 THNSL1Q8IYQ7 743 aa16.92■□□□□ 0.3
PTPRF-201ENST00000359947 PIGOQ8TEQ8 1089 aa16.92■□□□□ 0.3
PTPRF-201ENST00000359947 CHAMP1Q96JM3 812 aa16.92■□□□□ 0.3
PTPRF-201ENST00000359947 GCC2Q8IWJ2 1684 aa16.92■□□□□ 0.3
PTPRF-201ENST00000359947 PPP1R12AO14974 1030 aaPredicted RBP16.92■□□□□ 0.3
PTPRF-201ENST00000359947 MTMR3Q13615 1198 aa16.92■□□□□ 0.3
PTPRF-201ENST00000359947 H2AFZP0C0S5 128 aa16.92■□□□□ 0.3
PTPRF-201ENST00000359947 IQCB1Q15051 598 aa16.92■□□□□ 0.3
PTPRF-201ENST00000359947 H2AFVQ71UI9 128 aa16.92■□□□□ 0.3
PTPRF-201ENST00000359947 CMA1P23946 247 aa16.92■□□□□ 0.3
PTPRF-201ENST00000359947 GOLGA8FQ08AF8 430 aa16.92■□□□□ 0.3
PTPRF-201ENST00000359947 GOLGA8DPQ0D2H9 430 aa16.92■□□□□ 0.3
PTPRF-201ENST00000359947 TUBGCP2Q9BSJ2 902 aa16.92■□□□□ 0.3
PTPRF-201ENST00000359947 MSTO1Q9BUK6 570 aa16.92■□□□□ 0.3
PTPRF-201ENST00000359947 ATP8B3O60423 1300 aa16.91■□□□□ 0.3
PTPRF-201ENST00000359947 ERVV-1B6SEH8 477 aa16.91■□□□□ 0.3
PTPRF-201ENST00000359947 K7ERI5 159 aa16.91■□□□□ 0.3
PTPRF-201ENST00000359947 ASNSP08243 561 aa16.91■□□□□ 0.3
PTPRF-201ENST00000359947 PDE1BQ01064 536 aa16.91■□□□□ 0.3
PTPRF-201ENST00000359947 RC3H1Q5TC82 1133 aaKnown RBP16.91■□□□□ 0.3
PTPRF-201ENST00000359947 SNRNP48Q6IEG0 339 aaKnown RBP16.91■□□□□ 0.3
PTPRF-201ENST00000359947 SCN4BQ8IWT1 228 aa16.91■□□□□ 0.3
PTPRF-201ENST00000359947 CACNA2D3Q8IZS8 1091 aa16.91■□□□□ 0.3
PTPRF-201ENST00000359947 PIH1D3Q9NQM4 214 aaKnown RBP16.91■□□□□ 0.3
PTPRF-201ENST00000359947 CYP2D6P10635 497 aa16.91■□□□□ 0.3
PTPRF-201ENST00000359947 PEX3P56589 373 aa16.91■□□□□ 0.3
PTPRF-201ENST00000359947 TUBB2AQ13885 445 aa16.91■□□□□ 0.3
PTPRF-201ENST00000359947 PNMA8AQ86V59 439 aaPredicted RBP16.91■□□□□ 0.3
PTPRF-201ENST00000359947 TUBB2BQ9BVA1 445 aa16.91■□□□□ 0.3
PTPRF-201ENST00000359947 MAP7Q14244 749 aa16.91■□□□□ 0.3
PTPRF-201ENST00000359947 CDC26Q8NHZ8 85 aa16.91■□□□□ 0.3
PTPRF-201ENST00000359947 PIDD1Q9HB75 910 aa16.91■□□□□ 0.3
PTPRF-201ENST00000359947 SRGAP2BP0DMP2 458 aa16.91■□□□□ 0.3
PTPRF-201ENST00000359947 BANK1Q8NDB2 785 aa16.91■□□□□ 0.3
PTPRF-201ENST00000359947 OSBP2Q969R2 916 aa16.91■□□□□ 0.3
PTPRF-201ENST00000359947 GFPT2O94808 682 aa16.91■□□□□ 0.3
PTPRF-201ENST00000359947 CYP21A2P08686 494 aa16.91■□□□□ 0.3
PTPRF-201ENST00000359947 BPIFB4P59827 614 aa16.91■□□□□ 0.3
PTPRF-201ENST00000359947 AFPP02771 609 aaKnown RBP16.9■□□□□ 0.3
PTPRF-201ENST00000359947 GBP1P32455 592 aa16.9■□□□□ 0.3
PTPRF-201ENST00000359947 MMEL1Q495T6 779 aa16.9■□□□□ 0.3
PTPRF-201ENST00000359947 ZNF394Q53GI3 561 aa16.9■□□□□ 0.3
PTPRF-201ENST00000359947 RMDN3Q96TC7 470 aa16.9■□□□□ 0.3
PTPRF-201ENST00000359947 GCNT4Q9P109 453 aa16.9■□□□□ 0.3
PTPRF-201ENST00000359947 FAM160B2Q86V87 743 aa16.9■□□□□ 0.3
PTPRF-201ENST00000359947 CPVLQ9H3G5 476 aa16.9■□□□□ 0.3
PTPRF-201ENST00000359947 NEO1Q92859 1461 aa16.9■□□□□ 0.3
PTPRF-201ENST00000359947 A0A087WWV3 80 aa16.9■□□□□ 0.3
PTPRF-201ENST00000359947 GAP43P17677 238 aa16.9■□□□□ 0.3
PTPRF-201ENST00000359947 GARSP41250 739 aaKnown RBP16.9■□□□□ 0.3
PTPRF-201ENST00000359947 SLC17A8Q8NDX2 589 aa16.9■□□□□ 0.3
PTPRF-201ENST00000359947 RAB3IPQ96QF0 476 aaPredicted RBP16.9■□□□□ 0.3
PTPRF-201ENST00000359947 LMBRD1Q9NUN5 540 aa16.9■□□□□ 0.3
PTPRF-201ENST00000359947 CARMIL3Q8ND23 1372 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms