RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 EIF4ENIF1Q9NRA8 985 aaKnown RBP4.58□□□□□ -1.68
LIG4-201ENST00000356922 PTPN22Q9Y2R2 807 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 COL6A3P12111 3177 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 LRRC37A2A6NM11 1700 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 CYP3A7-CYP3A51PA0A087WV96 503 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 CTAGE5O15320 804 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 GADD45BO75293 160 aaPredicted RBP4.58□□□□□ -1.68
LIG4-201ENST00000356922 XRCC5P13010 732 aaKnown RBP4.58□□□□□ -1.68
LIG4-201ENST00000356922 XBP1P17861 261 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 PDCP20941 246 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 CYP3A7P24462 503 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 CIITAP33076 1130 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 SPIRE1Q08AE8 756 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 ACVR2BQ13705 512 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 ECM1Q16610 540 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 GALNT17Q6IS24 598 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 CCDC12Q8WUD4 166 aaPredicted RBP4.58□□□□□ -1.68
LIG4-201ENST00000356922 WRAP73Q9P2S5 460 aaPredicted RBP4.58□□□□□ -1.68
LIG4-201ENST00000356922 DDX39AO00148 427 aaKnown RBP4.58□□□□□ -1.68
LIG4-201ENST00000356922 EIF3JO75822 258 aaKnown RBP4.58□□□□□ -1.68
LIG4-201ENST00000356922 PRKAR2AP13861 404 aaKnown RBP4.58□□□□□ -1.68
LIG4-201ENST00000356922 KCNA2P16389 499 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 RGS2P41220 211 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 SP4Q02446 784 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 AP3B2Q13367 1082 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 MAP3K21Q5TCX8 1036 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 APBA2Q99767 749 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 SH2D3AQ9BRG2 576 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 KCNMB3Q9NPA1 279 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 JADE2Q9NQC1 790 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 MAP3K20Q9NYL2 800 aaKnown RBP4.58□□□□□ -1.68
LIG4-201ENST00000356922 DDX41Q9UJV9 622 aaKnown RBP4.58□□□□□ -1.68
LIG4-201ENST00000356922 SPATA31C2B4DYI2 1134 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 CYBAP13498 195 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 TXKP42681 527 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 USP11P51784 963 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 GNL2Q13823 731 aaKnown RBP4.57□□□□□ -1.68
LIG4-201ENST00000356922 STXBP2Q15833 593 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 TTC38Q5R3I4 469 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 LHX8Q68G74 356 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 PPP4R3AQ6IN85 833 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 B3GNT9Q6UX72 402 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 CYFIP1Q7L576 1253 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 TRMT1LQ7Z2T5 733 aaKnown RBP4.57□□□□□ -1.68
LIG4-201ENST00000356922 KRT25Q7Z3Z0 450 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 LINC00301Q8NCQ3 95 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 BICD2Q8TD16 824 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 ZBTB10Q96DT7 871 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 ERO1AQ96HE7 468 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 DDX25Q9UHL0 483 aaKnown RBP4.57□□□□□ -1.68
LIG4-201ENST00000356922 DIS3Q9Y2L1 958 aaKnown RBP4.57□□□□□ -1.68
LIG4-201ENST00000356922 RBBP6Q7Z6E9 1792 aaKnown RBP4.57□□□□□ -1.68
LIG4-201ENST00000356922 A0A087X0B3 334 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 TMEM150BA6NC51 233 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 POTEMA6NI47 508 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 PGK1P00558 417 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 FOSP01100 380 aaPredicted RBP4.57□□□□□ -1.68
LIG4-201ENST00000356922 INHAP05111 366 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 UBA1P22314 1058 aaKnown RBP4.57□□□□□ -1.68
LIG4-201ENST00000356922 GRK4P32298 578 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 TECP42680 631 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 CTCFP49711 727 aaPredicted RBP4.57□□□□□ -1.68
LIG4-201ENST00000356922 BEX3Q00994 111 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 PDE4DQ08499 809 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 IRF5Q13568 498 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 MTMR1Q13613 665 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 SAFBQ15424 915 aaKnown RBP eCLIP4.57□□□□□ -1.68
LIG4-201ENST00000356922 AXDND1Q5T1B0 1012 aaPredicted RBP4.57□□□□□ -1.68
LIG4-201ENST00000356922 PLA2G4DQ86XP0 818 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 RAET1EQ8TD07 263 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 EPSTI1Q96J88 318 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 IWS1Q96ST2 819 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 MMTAG2Q9BU76 263 aaKnown RBP4.57□□□□□ -1.68
LIG4-201ENST00000356922 UNC93B1Q9H1C4 597 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 AGO4Q9HCK5 861 aaKnown RBP4.57□□□□□ -1.68
LIG4-201ENST00000356922 CHMP5Q9NZZ3 219 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 VAV3Q9UKW4 847 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 ZHX1Q9UKY1 873 aaPredicted RBP4.57□□□□□ -1.68
LIG4-201ENST00000356922 GNEQ9Y223 722 aaKnown RBP4.57□□□□□ -1.68
LIG4-201ENST00000356922 C5orf42Q9H799 3197 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 IPO5O00410 1097 aaKnown RBP4.57□□□□□ -1.68
LIG4-201ENST00000356922 PSMD10O75832 226 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 BAG4O95429 457 aaKnown RBP4.57□□□□□ -1.68
LIG4-201ENST00000356922 TXNP10599 105 aaKnown RBP4.57□□□□□ -1.68
LIG4-201ENST00000356922 Q4G0T1 1027 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 ZNF467Q7Z7K2 595 aaPredicted RBP4.57□□□□□ -1.68
LIG4-201ENST00000356922 TRIM50Q86XT4 487 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 PCYT2Q99447 389 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 PANK2Q9BZ23 570 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 POLD4Q9HCU8 107 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 RGL1Q9NZL6 768 aa4.57□□□□□ -1.68
LIG4-201ENST00000356922 FIBPO43427 364 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 ATP4AP20648 1035 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 CNGA1P29973 690 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 CCND2P30279 289 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 COPB2P35606 906 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 ARHGAP1Q07960 439 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 HIC1Q14526 733 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 KIF22Q14807 665 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 SLC39A14Q15043 492 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms