RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.2■□□□□ 0.98
CCDC88B-202ENST00000356786 GMNCA6NCL1 334 aa21.2■□□□□ 0.98
CCDC88B-202ENST00000356786 GFPT2O94808 682 aa21.2■□□□□ 0.98
CCDC88B-202ENST00000356786 PHKG2P15735 406 aa21.2■□□□□ 0.98
CCDC88B-202ENST00000356786 ALKBH5Q6P6C2 394 aaKnown RBP21.2■□□□□ 0.98
CCDC88B-202ENST00000356786 NSMFQ6X4W1 530 aa21.2■□□□□ 0.98
CCDC88B-202ENST00000356786 CCDC24Q8N4L8 307 aa21.2■□□□□ 0.98
CCDC88B-202ENST00000356786 THEGQ9P2T0 379 aa21.2■□□□□ 0.98
CCDC88B-202ENST00000356786 GLI2P10070 1586 aa21.2■□□□□ 0.98
CCDC88B-202ENST00000356786 CASP1P29466 404 aa21.2■□□□□ 0.98
CCDC88B-202ENST00000356786 CNBD1Q8NA66 436 aa21.2■□□□□ 0.98
CCDC88B-202ENST00000356786 ZNF653Q96CK0 615 aa21.2■□□□□ 0.98
CCDC88B-202ENST00000356786 AFG3L2Q9Y4W6 797 aa21.2■□□□□ 0.98
CCDC88B-202ENST00000356786 CCDC188H7C350 402 aa21.19■□□□□ 0.98
CCDC88B-202ENST00000356786 USP14P54578 494 aa21.19■□□□□ 0.98
CCDC88B-202ENST00000356786 MYO1EQ12965 1108 aa21.19■□□□□ 0.98
CCDC88B-202ENST00000356786 ESYT3A0FGR9 886 aa21.19■□□□□ 0.98
CCDC88B-202ENST00000356786 SH3BP5O60239 455 aa21.19■□□□□ 0.98
CCDC88B-202ENST00000356786 PCCAP05165 728 aaPredicted RBP21.19■□□□□ 0.98
CCDC88B-202ENST00000356786 CA4P22748 312 aa21.19■□□□□ 0.98
CCDC88B-202ENST00000356786 CACNB1Q02641 598 aaPredicted RBP21.19■□□□□ 0.98
CCDC88B-202ENST00000356786 ADCY2Q08462 1091 aa21.19■□□□□ 0.98
CCDC88B-202ENST00000356786 SCYL2Q6P3W7 929 aa21.19■□□□□ 0.98
CCDC88B-202ENST00000356786 PCP11498 1178 aaKnown RBP21.19■□□□□ 0.98
CCDC88B-202ENST00000356786 PPM1FP49593 454 aaPredicted RBP21.19■□□□□ 0.98
CCDC88B-202ENST00000356786 LRRC47Q8N1G4 583 aaKnown RBP21.19■□□□□ 0.98
CCDC88B-202ENST00000356786 LRRC43Q8N309 656 aa21.19■□□□□ 0.98
CCDC88B-202ENST00000356786 HVCN1Q96D96 273 aa21.19■□□□□ 0.98
CCDC88B-202ENST00000356786 HDAC6Q9UBN7 1215 aa21.19■□□□□ 0.98
CCDC88B-202ENST00000356786 INTUQ9ULD6 942 aa21.19■□□□□ 0.98
CCDC88B-202ENST00000356786 GNPATO15228 680 aa21.19■□□□□ 0.98
CCDC88B-202ENST00000356786 TCP10Q12799 353 aa21.19■□□□□ 0.98
CCDC88B-202ENST00000356786 PROCA1Q8NCQ7 364 aaPredicted RBP21.19■□□□□ 0.98
CCDC88B-202ENST00000356786 MYL7Q01449 175 aa21.18■□□□□ 0.98
CCDC88B-202ENST00000356786 ODR4Q5SWX8 454 aa21.18■□□□□ 0.98
CCDC88B-202ENST00000356786 IRX2Q9BZI1 471 aaPredicted RBP21.18■□□□□ 0.98
CCDC88B-202ENST00000356786 TEX33O43247 280 aa21.18■□□□□ 0.98
CCDC88B-202ENST00000356786 ACSL3O95573 720 aa21.18■□□□□ 0.98
CCDC88B-202ENST00000356786 LIFRP42702 1097 aa21.18■□□□□ 0.98
CCDC88B-202ENST00000356786 ADGRB3O60242 1522 aa21.18■□□□□ 0.98
CCDC88B-202ENST00000356786 LOC102724159A0A0B4J2E5 919 aa21.18■□□□□ 0.98
CCDC88B-202ENST00000356786 ADD2P35612 726 aa21.18■□□□□ 0.98
CCDC88B-202ENST00000356786 PWP2Q15269 919 aaKnown RBP21.18■□□□□ 0.98
CCDC88B-202ENST00000356786 FAM186BQ8IYM0 893 aa21.18■□□□□ 0.98
CCDC88B-202ENST00000356786 TRPC6Q9Y210 931 aa21.18■□□□□ 0.98
CCDC88B-202ENST00000356786 FGGP02679 453 aa21.18■□□□□ 0.98
CCDC88B-202ENST00000356786 ESRRAP11474 423 aaPredicted RBP21.18■□□□□ 0.98
CCDC88B-202ENST00000356786 MAGOHP61326 146 aaKnown RBP21.18■□□□□ 0.98
CCDC88B-202ENST00000356786 RPS8P62241 208 aaKnown RBP21.18■□□□□ 0.98
CCDC88B-202ENST00000356786 KRT81Q14533 505 aa21.18■□□□□ 0.98
CCDC88B-202ENST00000356786 C10orf76Q5T2E6 689 aa21.18■□□□□ 0.98
CCDC88B-202ENST00000356786 GREM2Q9H772 168 aa21.18■□□□□ 0.98
CCDC88B-202ENST00000356786 EXOC1LA0A1B0GW35 172 aa21.17■□□□□ 0.98
CCDC88B-202ENST00000356786 CIAO1O76071 339 aa21.17■□□□□ 0.98
CCDC88B-202ENST00000356786 PLCG1P19174 1290 aa21.17■□□□□ 0.98
CCDC88B-202ENST00000356786 PTPN12Q05209 780 aaKnown RBP21.17■□□□□ 0.98
CCDC88B-202ENST00000356786 BEND6Q5SZJ8 279 aaPredicted RBP21.17■□□□□ 0.98
CCDC88B-202ENST00000356786 PITPNM3Q9BZ71 974 aa21.17■□□□□ 0.98
CCDC88B-202ENST00000356786 IFT122Q9HBG6 1241 aa21.17■□□□□ 0.98
CCDC88B-202ENST00000356786 GINS2Q9Y248 185 aa21.17■□□□□ 0.98
CCDC88B-202ENST00000356786 WDR91A4D1P6 747 aa21.17■□□□□ 0.98
CCDC88B-202ENST00000356786 LGALS16A8MUM7 142 aa21.17■□□□□ 0.98
CCDC88B-202ENST00000356786 MAPK4P31152 587 aa21.17■□□□□ 0.98
CCDC88B-202ENST00000356786 CCZ1BP86790 482 aa21.17■□□□□ 0.98
CCDC88B-202ENST00000356786 CCZ1P86791 482 aaPredicted RBP21.17■□□□□ 0.98
CCDC88B-202ENST00000356786 SOS2Q07890 1332 aaPredicted RBP21.17■□□□□ 0.98
CCDC88B-202ENST00000356786 SGK1O00141 431 aa21.17■□□□□ 0.98
CCDC88B-202ENST00000356786 PTK2Q05397 1052 aa21.17■□□□□ 0.98
CCDC88B-202ENST00000356786 ASPHQ12797 758 aa21.17■□□□□ 0.98
CCDC88B-202ENST00000356786 NLRP14Q86W24 1093 aa21.17■□□□□ 0.98
CCDC88B-202ENST00000356786 THOC1Q96FV9 657 aaKnown RBP21.17■□□□□ 0.98
CCDC88B-202ENST00000356786 DNAJC17Q9NVM6 304 aaKnown RBP21.17■□□□□ 0.98
CCDC88B-202ENST00000356786 STK17AQ9UEE5 414 aa21.17■□□□□ 0.98
CCDC88B-202ENST00000356786 CDK12Q9NYV4 1490 aaPredicted RBP21.17■□□□□ 0.98
CCDC88B-202ENST00000356786 MAPK13O15264 365 aa21.17■□□□□ 0.98
CCDC88B-202ENST00000356786 TRPA1O75762 1119 aa21.17■□□□□ 0.98
CCDC88B-202ENST00000356786 FAM102BQ5T8I3 360 aa21.17■□□□□ 0.98
CCDC88B-202ENST00000356786 NCAPGQ9BPX3 1015 aa21.17■□□□□ 0.98
CCDC88B-202ENST00000356786 PALMO75781 387 aa21.16■□□□□ 0.98
CCDC88B-202ENST00000356786 PDE1BQ01064 536 aa21.16■□□□□ 0.98
CCDC88B-202ENST00000356786 SEPT2Q15019 361 aa21.16■□□□□ 0.98
CCDC88B-202ENST00000356786 TRIP13Q15645 432 aaPredicted RBP21.16■□□□□ 0.98
CCDC88B-202ENST00000356786 TTBK2Q6IQ55 1244 aa21.16■□□□□ 0.98
CCDC88B-202ENST00000356786 TUBB6Q9BUF5 446 aa21.16■□□□□ 0.98
CCDC88B-202ENST00000356786 SNX24Q9Y343 169 aa21.16■□□□□ 0.98
CCDC88B-202ENST00000356786 MTF1Q14872 753 aa21.16■□□□□ 0.98
CCDC88B-202ENST00000356786 AOC3Q16853 763 aa21.16■□□□□ 0.98
CCDC88B-202ENST00000356786 XAB2Q9HCS7 855 aaKnown RBP21.16■□□□□ 0.98
CCDC88B-202ENST00000356786 ALKQ9UM73 1620 aa21.16■□□□□ 0.98
CCDC88B-202ENST00000356786 CEP152O94986 1710 aa21.16■□□□□ 0.98
CCDC88B-202ENST00000356786 PRKAB2O43741 272 aa21.16■□□□□ 0.98
CCDC88B-202ENST00000356786 STAM2O75886 525 aa21.16■□□□□ 0.98
CCDC88B-202ENST00000356786 PSMC2P35998 433 aaKnown RBP21.16■□□□□ 0.98
CCDC88B-202ENST00000356786 LARP7Q4G0J3 582 aaKnown RBP eCLIP21.16■□□□□ 0.98
CCDC88B-202ENST00000356786 CDCA7Q9BWT1 371 aaPredicted RBP21.16■□□□□ 0.98
CCDC88B-202ENST00000356786 MSH2P43246 934 aa21.16■□□□□ 0.98
CCDC88B-202ENST00000356786 HDLBPQ00341 1268 aaKnown RBP21.16■□□□□ 0.98
CCDC88B-202ENST00000356786 CTIFO43310 598 aaKnown RBP21.15■□□□□ 0.98
CCDC88B-202ENST00000356786 RNF8O76064 485 aa21.15■□□□□ 0.98
CCDC88B-202ENST00000356786 MORC4Q8TE76 937 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms