RNA–Protein interactions for RNA: ENST00000349748.7

CAPN3-203, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 2,955 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-203ENST00000349748 ITIH4Q14624 930 aa11.66□□□□□ -0.54
CAPN3-203ENST00000349748 HLFQ16534 295 aa11.66□□□□□ -0.54
CAPN3-203ENST00000349748 KBTBD12Q3ZCT8 623 aa11.66□□□□□ -0.54
CAPN3-203ENST00000349748 ZC2HC1CQ53FD0 456 aaPredicted RBP11.66□□□□□ -0.54
CAPN3-203ENST00000349748 RUFY4Q6ZNE9 571 aa11.66□□□□□ -0.54
CAPN3-203ENST00000349748 CEP128Q6ZU80 1094 aa11.66□□□□□ -0.54
CAPN3-203ENST00000349748 FAM47EQ6ZV65 393 aa11.66□□□□□ -0.54
CAPN3-203ENST00000349748 KRI1Q8N9T8 703 aaKnown RBP11.66□□□□□ -0.54
CAPN3-203ENST00000349748 FBXO41Q8TF61 875 aa11.66□□□□□ -0.54
CAPN3-203ENST00000349748 VCXQ9H320 206 aa11.66□□□□□ -0.54
CAPN3-203ENST00000349748 SWAP70Q9UH65 585 aa11.66□□□□□ -0.54
CAPN3-203ENST00000349748 ZNF609O15014 1411 aa11.66□□□□□ -0.54
CAPN3-203ENST00000349748 SUPT3HO75486 399 aa11.66□□□□□ -0.54
CAPN3-203ENST00000349748 TSR1Q2NL82 804 aaKnown RBP11.66□□□□□ -0.54
CAPN3-203ENST00000349748 ZNF530Q6P9A1 599 aaPredicted RBP11.66□□□□□ -0.54
CAPN3-203ENST00000349748 DDX42Q86XP3 938 aaKnown RBP eCLIP11.66□□□□□ -0.54
CAPN3-203ENST00000349748 TRIML1Q8N9V2 468 aa11.66□□□□□ -0.54
CAPN3-203ENST00000349748 UBLCP1Q8WVY7 318 aaPredicted RBP11.66□□□□□ -0.54
CAPN3-203ENST00000349748 C8orf37Q96NL8 207 aa11.66□□□□□ -0.54
CAPN3-203ENST00000349748 TRAPPC9Q96Q05 1148 aa11.66□□□□□ -0.54
CAPN3-203ENST00000349748 PURBQ96QR8 312 aaKnown RBP11.66□□□□□ -0.54
CAPN3-203ENST00000349748 NHEJ1Q9H9Q4 299 aaPredicted RBP11.66□□□□□ -0.54
CAPN3-203ENST00000349748 SAMD15Q9P1V8 674 aa11.66□□□□□ -0.54
CAPN3-203ENST00000349748 TUBGCP4Q9UGJ1 667 aa11.66□□□□□ -0.54
CAPN3-203ENST00000349748 PNMA2Q9UL42 364 aa11.66□□□□□ -0.54
CAPN3-203ENST00000349748 WDR17Q8IZU2 1322 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 MARF1Q9Y4F3 1742 aaKnown RBP11.65□□□□□ -0.54
CAPN3-203ENST00000349748 ZNF263O14978 683 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 PENKP01210 267 aaPredicted RBP11.65□□□□□ -0.54
CAPN3-203ENST00000349748 MMEP08473 750 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 EIF4A1P60842 406 aaKnown RBP11.65□□□□□ -0.54
CAPN3-203ENST00000349748 PLOD1Q02809 727 aaPredicted RBP11.65□□□□□ -0.54
CAPN3-203ENST00000349748 BIRC3Q13489 604 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 BICDL1Q6ZP65 573 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 APBB1IPQ7Z5R6 666 aaPredicted RBP11.65□□□□□ -0.54
CAPN3-203ENST00000349748 HOOK3Q86VS8 718 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 PALB2Q86YC2 1186 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 RNF168Q8IYW5 571 aaPredicted RBP11.65□□□□□ -0.54
CAPN3-203ENST00000349748 ANKRD13CQ8N6S4 541 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 WHAMMQ8TF30 809 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 MTA3Q9BTC8 594 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 DDX23Q9BUQ8 820 aaKnown RBP11.65□□□□□ -0.54
CAPN3-203ENST00000349748 UNC45AQ9H3U1 944 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 ARHGEF3Q9NR81 526 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 AGPAT5Q9NUQ2 364 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 TMCO1Q9UM00 188 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 CHMP2BQ9UQN3 213 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 HYOU1Q9Y4L1 999 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 GOLGA6L10A0A0M3HER8 536 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 KLF18A0A0U1RQI7 1052 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 PPP1R3GB7ZBB8 358 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 ACTN4O43707 911 aaKnown RBP11.65□□□□□ -0.54
CAPN3-203ENST00000349748 USO1O60763 962 aaKnown RBP11.65□□□□□ -0.54
CAPN3-203ENST00000349748 TACC1O75410 805 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 CHN1P15882 459 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 COPS2P61201 443 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 TRIM14Q14142 442 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 PLS1Q14651 629 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 KRT71Q3SY84 523 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 PI16Q6UXB8 463 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 PTF1AQ7RTS3 328 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 EXOC3L1Q86VI1 746 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 RETREG2Q8NC44 543 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 SNRNP27Q8WVK2 155 aaKnown RBP11.65□□□□□ -0.54
CAPN3-203ENST00000349748 DNAJC9Q8WXX5 260 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 STAMQ92783 540 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 KCNN1Q92952 543 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 DNAJC7Q99615 494 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 SCOCQ9UIL1 159 aa11.65□□□□□ -0.54
CAPN3-203ENST00000349748 SLIT3O75094 1523 aa11.65□□□□□ -0.55
CAPN3-203ENST00000349748 PHLPP1O60346 1717 aa11.64□□□□□ -0.55
CAPN3-203ENST00000349748 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.64□□□□□ -0.55
CAPN3-203ENST00000349748 VIL1P09327 827 aaKnown RBP11.64□□□□□ -0.55
CAPN3-203ENST00000349748 IFNAR2P48551 515 aa11.64□□□□□ -0.55
CAPN3-203ENST00000349748 BTG3Q14201 252 aaPredicted RBP11.64□□□□□ -0.55
CAPN3-203ENST00000349748 RASIP1Q5U651 963 aa11.64□□□□□ -0.55
CAPN3-203ENST00000349748 LRIG3Q6UXM1 1119 aa11.64□□□□□ -0.55
CAPN3-203ENST00000349748 MPRIPQ6WCQ1 1025 aa11.64□□□□□ -0.55
CAPN3-203ENST00000349748 KLHDC4Q8TBB5 520 aa11.64□□□□□ -0.55
CAPN3-203ENST00000349748 ANKRD27Q96NW4 1050 aa11.64□□□□□ -0.55
CAPN3-203ENST00000349748 SELENOSQ9BQE4 189 aa11.64□□□□□ -0.55
CAPN3-203ENST00000349748 CORO1BQ9BR76 489 aa11.64□□□□□ -0.55
CAPN3-203ENST00000349748 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.64□□□□□ -0.55
CAPN3-203ENST00000349748 CARD9Q9H257 536 aa11.64□□□□□ -0.55
CAPN3-203ENST00000349748 ETNK2Q9NVF9 386 aa11.64□□□□□ -0.55
CAPN3-203ENST00000349748 TMOD4Q9NZQ9 345 aa11.64□□□□□ -0.55
CAPN3-203ENST00000349748 HPS5Q9UPZ3 1129 aa11.64□□□□□ -0.55
CAPN3-203ENST00000349748 RFX7Q2KHR2 1363 aa11.64□□□□□ -0.55
CAPN3-203ENST00000349748 ASAP2O43150 1006 aa11.64□□□□□ -0.55
CAPN3-203ENST00000349748 PLEKP08567 350 aaPredicted RBP11.64□□□□□ -0.55
CAPN3-203ENST00000349748 GM2AP17900 193 aa11.64□□□□□ -0.55
CAPN3-203ENST00000349748 TCP1P17987 556 aaKnown RBP11.64□□□□□ -0.55
CAPN3-203ENST00000349748 CALB2P22676 271 aa11.64□□□□□ -0.55
CAPN3-203ENST00000349748 CYLC1P35663 651 aaPredicted RBP11.64□□□□□ -0.55
CAPN3-203ENST00000349748 FLT3P36888 993 aa11.64□□□□□ -0.55
CAPN3-203ENST00000349748 DHX9Q08211 1270 aaKnown RBP11.64□□□□□ -0.55
CAPN3-203ENST00000349748 KRT40Q6A162 431 aa11.64□□□□□ -0.55
CAPN3-203ENST00000349748 CACNA2D4Q7Z3S7 1137 aa11.64□□□□□ -0.55
CAPN3-203ENST00000349748 RNPEPL1Q9HAU8 725 aa11.64□□□□□ -0.55
CAPN3-203ENST00000349748 LIMA1Q9UHB6 759 aaKnown RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms