RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 TRIM28Q13263 835 aaKnown RBP7.48□□□□□ -1.21
VPS39-202ENST00000348544 BIRC3Q13489 604 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 CCDC178Q5BJE1 867 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 IFIT1BQ5T764 474 aaKnown RBP7.48□□□□□ -1.21
VPS39-202ENST00000348544 MEI1Q5TIA1 1274 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 RCSD1Q6JBY9 416 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 HIBCHQ6NVY1 386 aaPredicted RBP7.48□□□□□ -1.21
VPS39-202ENST00000348544 CEP120Q8N960 986 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 KIAA0895Q8NCT3 520 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 MDM1Q8TC05 714 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 NSMCE1Q8WV22 266 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 ESR2Q92731 530 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 KDM4CQ9H3R0 1056 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 BCCIPQ9P287 314 aaKnown RBP eCLIP7.48□□□□□ -1.21
VPS39-202ENST00000348544 BAIAP2L1Q9UHR4 511 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 FBXL5Q9UKA1 691 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 NOVA2Q9UNW9 492 aaKnown RBP7.48□□□□□ -1.21
VPS39-202ENST00000348544 ZNF330Q9Y3S2 320 aaPredicted RBP7.48□□□□□ -1.21
VPS39-202ENST00000348544 DUOX1Q9NRD9 1551 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 BICDL2A1A5D9 508 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 RBAK-RBAKDNI3L0D1 243 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 KIF3CO14782 793 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 SCG2P13521 617 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 MAGOHP61326 146 aaKnown RBP7.47□□□□□ -1.21
VPS39-202ENST00000348544 IRX1P78414 480 aaPredicted RBP7.47□□□□□ -1.21
VPS39-202ENST00000348544 EVX2Q03828 476 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 NAB2Q15742 525 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 GKAP1Q5VSY0 366 aaPredicted RBP7.47□□□□□ -1.21
VPS39-202ENST00000348544 CDCA2Q69YH5 1023 aaPredicted RBP7.47□□□□□ -1.21
VPS39-202ENST00000348544 CATIPQ7Z7H3 387 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 ZNF483Q8TF39 744 aaPredicted RBP7.47□□□□□ -1.21
VPS39-202ENST00000348544 MAGOHBQ96A72 148 aaKnown RBP7.47□□□□□ -1.21
VPS39-202ENST00000348544 IQCDQ96DY2 449 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 HOOK2Q96ED9 719 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 THOC1Q96FV9 657 aaKnown RBP7.47□□□□□ -1.21
VPS39-202ENST00000348544 TRIM9Q9C026 710 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 RBM28Q9NW13 759 aaKnown RBP7.47□□□□□ -1.21
VPS39-202ENST00000348544 L3MBTL1Q9Y468 752 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 PCDHGC5Q9Y5F6 944 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 ARAP2Q8WZ64 1704 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 CCT8L1PA6NM43 557 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 TRIM37O94972 964 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 MYL1P05976 194 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 CSB-PGBD3P0DP91 1061 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 GNAT2P19087 354 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 PLCG1P19174 1290 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 CDC25CP30307 473 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 CTSWP56202 376 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 SF3A3Q12874 501 aaKnown RBP eCLIP7.47□□□□□ -1.21
VPS39-202ENST00000348544 PPP1R7Q15435 360 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 NBPF9Q3BBW0 867 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 AGBL2Q5U5Z8 902 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 MSL1Q68DK7 614 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 TAX1BP1Q86VP1 789 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 LMBR1Q8WVP7 490 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 P3H4Q92791 437 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 PACSIN1Q9BY11 444 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 SLC39A2Q9NP94 309 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 ANAPC4Q9UJX5 808 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 SLC12A4Q9UP95 1085 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 DLEC1Q9Y238 1755 aa7.47□□□□□ -1.21
VPS39-202ENST00000348544 SSU72P8A0A1W2PR75 194 aa7.46□□□□□ -1.21
VPS39-202ENST00000348544 NMT2O60551 498 aa7.46□□□□□ -1.21
VPS39-202ENST00000348544 BUB1BO60566 1050 aaPredicted RBP7.46□□□□□ -1.21
VPS39-202ENST00000348544 UBA7P41226 1012 aa7.46□□□□□ -1.21
VPS39-202ENST00000348544 TNNC1P63316 161 aa7.46□□□□□ -1.21
VPS39-202ENST00000348544 KCNMA1Q12791 1236 aa7.46□□□□□ -1.21
VPS39-202ENST00000348544 PUM3Q15397 648 aaKnown RBP7.46□□□□□ -1.21
VPS39-202ENST00000348544 PFKFB3Q16875 520 aaPredicted RBP7.46□□□□□ -1.21
VPS39-202ENST00000348544 TDRD12Q587J7 1177 aaKnown RBP7.46□□□□□ -1.21
VPS39-202ENST00000348544 ODF2Q5BJF6 829 aa7.46□□□□□ -1.21
VPS39-202ENST00000348544 CENPPQ6IPU0 288 aa7.46□□□□□ -1.21
VPS39-202ENST00000348544 DTHD1Q6ZMT9 781 aa7.46□□□□□ -1.21
VPS39-202ENST00000348544 BZW1Q7L1Q6 419 aaKnown RBP7.46□□□□□ -1.21
VPS39-202ENST00000348544 CPLX4Q7Z7G2 160 aa7.46□□□□□ -1.21
VPS39-202ENST00000348544 EIF1ADQ8N9N8 165 aaKnown RBP7.46□□□□□ -1.21
VPS39-202ENST00000348544 RNF217Q8TC41 542 aa7.46□□□□□ -1.21
VPS39-202ENST00000348544 UBLCP1Q8WVY7 318 aaPredicted RBP7.46□□□□□ -1.21
VPS39-202ENST00000348544 TCP11Q8WWU5 503 aa7.46□□□□□ -1.21
VPS39-202ENST00000348544 ZNF570Q96NI8 536 aa7.46□□□□□ -1.21
VPS39-202ENST00000348544 XPO6Q96QU8 1125 aaKnown RBP7.46□□□□□ -1.21
VPS39-202ENST00000348544 CCSER1Q9C0I3 900 aa7.46□□□□□ -1.21
VPS39-202ENST00000348544 GOLPH3Q9H4A6 298 aa7.46□□□□□ -1.21
VPS39-202ENST00000348544 KCNMB3Q9NPA1 279 aa7.46□□□□□ -1.21
VPS39-202ENST00000348544 C15orf41Q9Y2V0 281 aa7.46□□□□□ -1.21
VPS39-202ENST00000348544 COL18A1P39060 1754 aa7.46□□□□□ -1.21
VPS39-202ENST00000348544 MYH7BA7E2Y1 1941 aa7.46□□□□□ -1.22
VPS39-202ENST00000348544 ZBTB48P10074 688 aaPredicted RBP7.46□□□□□ -1.22
VPS39-202ENST00000348544 ASIC1P78348 528 aa7.46□□□□□ -1.22
VPS39-202ENST00000348544 BIRC2Q13490 618 aa7.46□□□□□ -1.22
VPS39-202ENST00000348544 CUL1Q13616 776 aa7.46□□□□□ -1.22
VPS39-202ENST00000348544 MAN2A1Q16706 1144 aa7.46□□□□□ -1.22
VPS39-202ENST00000348544 ERMARDQ5T6L9 678 aa7.46□□□□□ -1.22
VPS39-202ENST00000348544 RUFY4Q6ZNE9 571 aa7.46□□□□□ -1.22
VPS39-202ENST00000348544 TOM1L2Q6ZVM7 507 aa7.46□□□□□ -1.22
VPS39-202ENST00000348544 ARMC9Q7Z3E5 817 aa7.46□□□□□ -1.22
VPS39-202ENST00000348544 TMC3Q7Z5M5 1100 aa7.46□□□□□ -1.22
VPS39-202ENST00000348544 BLIDQ8IZY5 108 aa7.46□□□□□ -1.22
VPS39-202ENST00000348544 STAG2Q8N3U4 1231 aa7.46□□□□□ -1.22
VPS39-202ENST00000348544 SCFD2Q8WU76 684 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms