RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 C12orf42Q96LP6 360 aa14.33□□□□□ -0.12
CLK3-201ENST00000345005 XPO4Q9C0E2 1151 aaKnown RBP14.33□□□□□ -0.12
CLK3-201ENST00000345005 IFNKQ9P0W0 207 aa14.33□□□□□ -0.12
CLK3-201ENST00000345005 ZNF536O15090 1300 aa14.33□□□□□ -0.12
CLK3-201ENST00000345005 SCN4AP35499 1836 aa14.33□□□□□ -0.12
CLK3-201ENST00000345005 KCNB1Q14721 858 aa14.32□□□□□ -0.12
CLK3-201ENST00000345005 ARID5BQ14865 1188 aa14.32□□□□□ -0.12
CLK3-201ENST00000345005 PRR16Q569H4 304 aa14.32□□□□□ -0.12
CLK3-201ENST00000345005 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.32□□□□□ -0.12
CLK3-201ENST00000345005 SNX29Q8TEQ0 813 aa14.32□□□□□ -0.12
CLK3-201ENST00000345005 UBXN4Q92575 508 aa14.32□□□□□ -0.12
CLK3-201ENST00000345005 TBC1D5Q92609 795 aa14.32□□□□□ -0.12
CLK3-201ENST00000345005 CCDC47Q96A33 483 aaKnown RBP14.32□□□□□ -0.12
CLK3-201ENST00000345005 L3MBTL3Q96JM7 780 aaPredicted RBP14.32□□□□□ -0.12
CLK3-201ENST00000345005 AGBL1Q96MI9 1066 aa14.32□□□□□ -0.12
CLK3-201ENST00000345005 MAP3K20Q9NYL2 800 aaKnown RBP14.32□□□□□ -0.12
CLK3-201ENST00000345005 RABGAP1Q9Y3P9 1069 aa14.32□□□□□ -0.12
CLK3-201ENST00000345005 STK24Q9Y6E0 443 aa14.32□□□□□ -0.12
CLK3-201ENST00000345005 PTPRFP10586 1907 aa14.32□□□□□ -0.12
CLK3-201ENST00000345005 WDR90Q96KV7 1748 aa14.32□□□□□ -0.12
CLK3-201ENST00000345005 POTEMA6NI47 508 aa14.31□□□□□ -0.12
CLK3-201ENST00000345005 EFCAB8A8MWE9 144 aa14.31□□□□□ -0.12
CLK3-201ENST00000345005 PPP1R12BO60237 982 aaPredicted RBP14.31□□□□□ -0.12
CLK3-201ENST00000345005 MAP3K9P80192 1104 aa14.31□□□□□ -0.12
CLK3-201ENST00000345005 GRB10Q13322 594 aa14.31□□□□□ -0.12
CLK3-201ENST00000345005 ZNF658Q5TYW1 1059 aaPredicted RBP14.31□□□□□ -0.12
CLK3-201ENST00000345005 USP50Q70EL3 339 aaPredicted RBP14.31□□□□□ -0.12
CLK3-201ENST00000345005 SV2BQ7L1I2 683 aa14.31□□□□□ -0.12
CLK3-201ENST00000345005 ETNPPLQ8TBG4 499 aa14.31□□□□□ -0.12
CLK3-201ENST00000345005 C7orf25Q9BPX7 421 aa14.31□□□□□ -0.12
CLK3-201ENST00000345005 LRRC27Q9C0I9 530 aa14.31□□□□□ -0.12
CLK3-201ENST00000345005 NT5C3AQ9H0P0 336 aa14.31□□□□□ -0.12
CLK3-201ENST00000345005 TMOD4Q9NZQ9 345 aa14.31□□□□□ -0.12
CLK3-201ENST00000345005 FZD1Q9UP38 647 aa14.31□□□□□ -0.12
CLK3-201ENST00000345005 ZC3H4Q9UPT8 1303 aaKnown RBP14.31□□□□□ -0.12
CLK3-201ENST00000345005 KDM3AQ9Y4C1 1321 aa14.31□□□□□ -0.12
CLK3-201ENST00000345005 OTOFQ9HC10 1997 aa14.31□□□□□ -0.12
CLK3-201ENST00000345005 HSD17B4P51659 736 aa14.31□□□□□ -0.12
CLK3-201ENST00000345005 FANCCQ00597 558 aa14.31□□□□□ -0.12
CLK3-201ENST00000345005 DGKZQ13574 1117 aa14.31□□□□□ -0.12
CLK3-201ENST00000345005 ARMCX5Q6P1M9 558 aa14.31□□□□□ -0.12
CLK3-201ENST00000345005 TMCO3Q6UWJ1 677 aa14.31□□□□□ -0.12
CLK3-201ENST00000345005 CPXCR1Q8N123 301 aa14.31□□□□□ -0.12
CLK3-201ENST00000345005 MNS1Q8NEH6 495 aa14.31□□□□□ -0.12
CLK3-201ENST00000345005 ZC3H15Q8WU90 426 aaKnown RBP14.31□□□□□ -0.12
CLK3-201ENST00000345005 PNMA5Q96PV4 448 aa14.31□□□□□ -0.12
CLK3-201ENST00000345005 DNAI1Q9UI46 699 aa14.31□□□□□ -0.12
CLK3-201ENST00000345005 AFG3L2Q9Y4W6 797 aa14.31□□□□□ -0.12
CLK3-201ENST00000345005 PAPPA2Q9BXP8 1791 aa14.31□□□□□ -0.12
CLK3-201ENST00000345005 PPP1R3GB7ZBB8 358 aa14.3□□□□□ -0.12
CLK3-201ENST00000345005 FAM86B1E9PN63 330 aa14.3□□□□□ -0.12
CLK3-201ENST00000345005 FAM86B2P0C5J1 330 aa14.3□□□□□ -0.12
CLK3-201ENST00000345005 CDK11BP21127 795 aaKnown RBP14.3□□□□□ -0.12
CLK3-201ENST00000345005 HMGCS2P54868 508 aa14.3□□□□□ -0.12
CLK3-201ENST00000345005 GHRHRQ02643 423 aa14.3□□□□□ -0.12
CLK3-201ENST00000345005 PRKG1Q13976 671 aa14.3□□□□□ -0.12
CLK3-201ENST00000345005 NAA30Q147X3 362 aaPredicted RBP14.3□□□□□ -0.12
CLK3-201ENST00000345005 TMEM119Q4V9L6 283 aa14.3□□□□□ -0.12
CLK3-201ENST00000345005 HYIQ5T013 277 aa14.3□□□□□ -0.12
CLK3-201ENST00000345005 SYT10Q6XYQ8 523 aa14.3□□□□□ -0.12
CLK3-201ENST00000345005 KRT26Q7Z3Y9 468 aa14.3□□□□□ -0.12
CLK3-201ENST00000345005 RBM46Q8TBY0 533 aaKnown RBP14.3□□□□□ -0.12
CLK3-201ENST00000345005 CLEC4DQ8WXI8 215 aa14.3□□□□□ -0.12
CLK3-201ENST00000345005 LENG9Q96B70 501 aa14.3□□□□□ -0.12
CLK3-201ENST00000345005 HSD3B7Q9H2F3 369 aa14.3□□□□□ -0.12
CLK3-201ENST00000345005 RAVER2Q9HCJ3 691 aaKnown RBP14.3□□□□□ -0.12
CLK3-201ENST00000345005 FANCLQ9NW38 375 aa14.3□□□□□ -0.12
CLK3-201ENST00000345005 VWA5AO00534 786 aa14.29□□□□□ -0.12
CLK3-201ENST00000345005 ARHGAP6O43182 974 aa14.29□□□□□ -0.12
CLK3-201ENST00000345005 ALAS1P13196 640 aa14.29□□□□□ -0.12
CLK3-201ENST00000345005 CCT6AP40227 531 aaKnown RBP14.29□□□□□ -0.12
CLK3-201ENST00000345005 UBASH3AP57075 661 aa14.29□□□□□ -0.12
CLK3-201ENST00000345005 FMR1Q06787 632 aaKnown RBP eCLIP14.29□□□□□ -0.12
CLK3-201ENST00000345005 ERMNQ8TAM6 284 aa14.29□□□□□ -0.12
CLK3-201ENST00000345005 LRRC15Q8TF66 581 aa14.29□□□□□ -0.12
CLK3-201ENST00000345005 LARP4BQ92615 738 aaKnown RBP14.29□□□□□ -0.12
CLK3-201ENST00000345005 RAD54LQ92698 747 aa14.29□□□□□ -0.12
CLK3-201ENST00000345005 TMX1Q9H3N1 280 aa14.29□□□□□ -0.12
CLK3-201ENST00000345005 BLOC1S4Q9NUP1 217 aa14.29□□□□□ -0.12
CLK3-201ENST00000345005 CSADQ9Y600 493 aa14.29□□□□□ -0.12
CLK3-201ENST00000345005 V9GYY5 206 aaPredicted RBP14.29□□□□□ -0.12
CLK3-201ENST00000345005 ADM5C9JUS6 153 aa14.29□□□□□ -0.12
CLK3-201ENST00000345005 RHOBTB3O94955 611 aa14.29□□□□□ -0.12
CLK3-201ENST00000345005 CD44P16070 742 aaKnown RBP14.29□□□□□ -0.12
CLK3-201ENST00000345005 DSG3P32926 999 aa14.29□□□□□ -0.12
CLK3-201ENST00000345005 EPHX2P34913 555 aa14.29□□□□□ -0.12
CLK3-201ENST00000345005 NF2P35240 595 aa14.29□□□□□ -0.12
CLK3-201ENST00000345005 IREB2P48200 963 aaKnown RBP14.29□□□□□ -0.12
CLK3-201ENST00000345005 OAZ1P54368 228 aa14.29□□□□□ -0.12
CLK3-201ENST00000345005 TUBB2AQ13885 445 aa14.29□□□□□ -0.12
CLK3-201ENST00000345005 COG2Q14746 738 aa14.29□□□□□ -0.12
CLK3-201ENST00000345005 SH3D19Q5HYK7 790 aa14.29□□□□□ -0.12
CLK3-201ENST00000345005 SPATA1Q5VX52 437 aa14.29□□□□□ -0.12
CLK3-201ENST00000345005 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.29□□□□□ -0.12
CLK3-201ENST00000345005 GJA10Q969M2 543 aa14.29□□□□□ -0.12
CLK3-201ENST00000345005 TUBB2BQ9BVA1 445 aa14.29□□□□□ -0.12
CLK3-201ENST00000345005 TRIM9Q9C026 710 aa14.29□□□□□ -0.12
CLK3-201ENST00000345005 ADAMTS5Q9UNA0 930 aa14.29□□□□□ -0.12
CLK3-201ENST00000345005 NFE2L3Q9Y4A8 694 aa14.29□□□□□ -0.12
CLK3-201ENST00000345005 IGLV3-22A0A075B6J6 115 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms