RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 KRT23Q9C075 422 aa8.94□□□□□ -0.98
ATG4A-201ENST00000343524 SH2D4AQ9H788 454 aa8.94□□□□□ -0.98
ATG4A-201ENST00000343524 HCSTQ9UBK5 93 aa8.94□□□□□ -0.98
ATG4A-201ENST00000343524 HPS5Q9UPZ3 1129 aa8.94□□□□□ -0.98
ATG4A-201ENST00000343524 CTNND2Q9UQB3 1225 aa8.94□□□□□ -0.98
ATG4A-201ENST00000343524 FPGT-TNNI3KV9GXZ4 949 aa8.94□□□□□ -0.98
ATG4A-201ENST00000343524 GOLGB1Q14789 3259 aaKnown RBP8.94□□□□□ -0.98
ATG4A-201ENST00000343524 PDS5AQ29RF7 1337 aaKnown RBP8.94□□□□□ -0.98
ATG4A-201ENST00000343524 A0A1W2PQJ5 194 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 H7C1D1 291 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 RNF8O76064 485 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 GSTA2P09210 222 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 DRD4P21917 467 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 DNM2P50570 870 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 METAP2P50579 478 aaKnown RBP eCLIP8.93□□□□□ -0.98
ATG4A-201ENST00000343524 ZBED6P86452 979 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 MLLT1Q03111 559 aaPredicted RBP8.93□□□□□ -0.98
ATG4A-201ENST00000343524 TSNAXIP1Q2TAA8 658 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 TEKT4Q8WW24 435 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 PIK3R5Q8WYR1 880 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 RAPGEF5Q92565 580 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 RBM41Q96IZ5 413 aaKnown RBP8.93□□□□□ -0.98
ATG4A-201ENST00000343524 RAB3IPQ96QF0 476 aaPredicted RBP8.93□□□□□ -0.98
ATG4A-201ENST00000343524 FAM129AQ9BZQ8 928 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 LUC7LQ9NQ29 371 aaKnown RBP8.93□□□□□ -0.98
ATG4A-201ENST00000343524 COPRSQ9NQ92 184 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 AATFQ9NY61 560 aaKnown RBP eCLIP8.93□□□□□ -0.986e-7■■■■■ 46.9
ATG4A-201ENST00000343524 MAGEC2Q9UBF1 373 aaPredicted RBP8.93□□□□□ -0.98
ATG4A-201ENST00000343524 NFU1Q9UMS0 254 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.93□□□□□ -0.98
ATG4A-201ENST00000343524 GPR75-ASB3A0A0A6YYF3 556 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 TTC26A0AVF1 554 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 MACROD2A1Z1Q3 448 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 PPP1R3GB7ZBB8 358 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 RANBP1P43487 201 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 STX17P56962 302 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 DPYDQ12882 1025 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 SNX1Q13596 522 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 BYSLQ13895 437 aaKnown RBP8.93□□□□□ -0.98
ATG4A-201ENST00000343524 CCDC96Q2M329 555 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 FIGNQ5HY92 759 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 RRP12Q5JTH9 1297 aaKnown RBP8.93□□□□□ -0.98
ATG4A-201ENST00000343524 SH3RF1Q7Z6J0 888 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 HOOK3Q86VS8 718 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 MB21D2Q8IYB1 491 aaPredicted RBP8.93□□□□□ -0.98
ATG4A-201ENST00000343524 MB21D1Q8N884 522 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 HDAC7Q8WUI4 952 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 PLEKHG4BQ96PX9 1271 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 EPAS1Q99814 870 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 VPS16Q9H269 839 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 FOXP1Q9H334 677 aaPredicted RBP8.93□□□□□ -0.98
ATG4A-201ENST00000343524 NHEJ1Q9H9Q4 299 aaPredicted RBP8.93□□□□□ -0.98
ATG4A-201ENST00000343524 EPB41L5Q9HCM4 733 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 TAB2Q9NYJ8 693 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 DBNLQ9UJU6 430 aaKnown RBP8.93□□□□□ -0.98
ATG4A-201ENST00000343524 ASB3Q9Y575 518 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 CD2APQ9Y5K6 639 aa8.93□□□□□ -0.98
ATG4A-201ENST00000343524 USP6P35125 1406 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 HIP1RO75146 1068 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 ATP2C2O75185 946 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 CTNNA1P35221 906 aaKnown RBP8.92□□□□□ -0.98
ATG4A-201ENST00000343524 IARSP41252 1262 aaKnown RBP8.92□□□□□ -0.98
ATG4A-201ENST00000343524 RGS19P49795 217 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 SLC7A5Q01650 507 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 GUCY2DQ02846 1103 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 MAP3K12Q12852 859 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 QPCTQ16769 361 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 SPRED3Q2MJR0 410 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 GNPTABQ3T906 1256 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 TRPM8Q7Z2W7 1104 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 STK11IPQ8N1F8 1099 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 ARHGAP18Q8N392 663 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 RNF10Q8N5U6 811 aaKnown RBP8.92□□□□□ -0.98
ATG4A-201ENST00000343524 ATL2Q8NHH9 583 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 SUCLG2Q96I99 432 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 CCDC42Q96M95 316 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 RAB17Q9H0T7 212 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 ISCUQ9H1K1 167 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 VCX3BQ9H321 246 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 VCX3AQ9NNX9 186 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 NMRK2Q9NPI5 230 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 WDR35Q9P2L0 1181 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 MAP3K2Q9Y2U5 619 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 PNPLA7Q6ZV29 1317 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 CES2O00748 559 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 KIF4AO95239 1232 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 BAG3O95817 575 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 PYGLP06737 847 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 ZFYP08048 801 aaPredicted RBP8.92□□□□□ -0.98
ATG4A-201ENST00000343524 EIF2S2P20042 333 aaKnown RBP8.92□□□□□ -0.98
ATG4A-201ENST00000343524 ABCD1P33897 745 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 SKIV2L2P42285 1042 aaKnown RBP8.92□□□□□ -0.98
ATG4A-201ENST00000343524 MATR3P43243 847 aaKnown RBP eCLIP8.92□□□□□ -0.98
ATG4A-201ENST00000343524 EIF4A1P60842 406 aaKnown RBP8.92□□□□□ -0.98
ATG4A-201ENST00000343524 ZRSR2Q15696 482 aaKnown RBP8.92□□□□□ -0.98
ATG4A-201ENST00000343524 ERMARDQ5T6L9 678 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 TBC1D1Q86TI0 1168 aaPredicted RBP8.92□□□□□ -0.98
ATG4A-201ENST00000343524 LCA5Q86VQ0 697 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 FAM114A1Q8IWE2 563 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 IFT81Q8WYA0 676 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms